Wall clock time and date at job start Tue Mar 31 2020 19:01:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48506 * 109.47116 * 239.99922 * 3 2 1 5 5 H 1.48490 * 109.47381 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46756 * 120.00523 * 3 2 1 7 7 C 1.37876 * 119.99563 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99652 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47291 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46886 * 179.97438 * 10 9 7 12 12 S 1.81404 * 109.46946 * 180.02562 * 11 10 9 13 13 O 1.42107 * 110.54111 * 291.62603 * 12 11 10 14 14 O 1.42102 * 110.54223 * 68.37613 * 12 11 10 15 15 N 1.65600 * 104.45074 * 180.02562 * 12 11 10 16 16 C 1.46503 * 120.00062 * 64.99734 * 15 12 11 17 17 C 1.52995 * 109.47293 * 165.00295 * 16 15 12 18 18 C 1.52999 * 109.47081 * 180.02562 * 17 16 15 19 19 O 1.42906 * 109.46681 * 180.02562 * 18 17 16 20 20 C 1.42905 * 113.99646 * 179.97438 * 19 18 17 21 21 H 1.08992 * 109.48221 * 310.02406 * 20 19 18 22 22 C 1.53088 * 109.47861 * 189.99693 * 20 19 18 23 23 C 1.53180 * 109.16225 * 182.40852 * 22 20 19 24 24 C 1.53186 * 109.03325 * 56.98542 * 23 22 20 25 25 C 1.53096 * 109.16022 * 303.01600 * 24 23 22 26 26 O 1.42898 * 109.41485 * 57.61401 * 25 24 23 27 27 H 0.97000 * 119.99425 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.46613 * 59.99978 * 9 7 2 29 29 H 1.09002 * 109.47120 * 300.00329 * 9 7 2 30 30 H 1.09001 * 109.46652 * 60.00253 * 10 9 7 31 31 H 1.08992 * 109.47514 * 300.00342 * 10 9 7 32 32 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 33 33 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 34 34 H 0.96993 * 120.00181 * 245.00479 * 15 12 11 35 35 H 1.09001 * 109.46958 * 285.00636 * 16 15 12 36 36 H 1.08997 * 109.46783 * 44.99932 * 16 15 12 37 37 H 1.09000 * 109.46735 * 300.00426 * 17 16 15 38 38 H 1.08998 * 109.47323 * 59.99555 * 17 16 15 39 39 H 1.08998 * 109.46796 * 299.99366 * 18 17 16 40 40 H 1.08997 * 109.47206 * 60.00111 * 18 17 16 41 41 H 1.09002 * 109.52414 * 302.31396 * 22 20 19 42 42 H 1.09000 * 109.52693 * 62.50416 * 22 20 19 43 43 H 1.09005 * 109.54111 * 176.84419 * 23 22 20 44 44 H 1.08994 * 109.54836 * 297.11556 * 23 22 20 45 45 H 1.08996 * 109.52415 * 62.92327 * 24 23 22 46 46 H 1.09005 * 109.51709 * 183.11419 * 24 23 22 47 47 H 1.08995 * 109.47894 * 177.59644 * 25 24 23 48 48 H 1.09006 * 109.47978 * 297.61547 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4801 -4.9871 -0.0012 12 16 2.6589 -6.3660 -0.0019 13 8 3.3548 -6.4264 -1.2395 14 8 3.3565 -6.4262 1.2346 15 7 1.7085 -7.7221 -0.0019 16 6 0.8485 -8.0140 -1.1515 17 6 0.3750 -9.4669 -1.0783 18 6 -0.5226 -9.7719 -2.2792 19 8 -0.9654 -11.1289 -2.2104 20 6 -1.8153 -11.5184 -3.2912 21 1 -2.6122 -10.7843 -3.4098 22 6 -2.4252 -12.8903 -2.9922 23 6 -3.2866 -13.3276 -4.1810 24 6 -2.4232 -13.3385 -5.4463 25 6 -1.8134 -11.9492 -5.6505 26 8 -1.0507 -11.5909 -4.4965 27 1 -0.4849 0.8401 0.0004 28 1 0.6240 -2.5566 -0.8903 29 1 0.6246 -2.5571 0.8897 30 1 2.8725 -3.6048 0.8878 31 1 2.8712 -3.6040 -0.8921 32 1 0.8543 -5.0449 0.8894 33 1 0.8525 -5.0447 -0.8905 34 1 1.7211 -8.3231 0.7593 35 1 -0.0152 -7.3491 -1.1372 36 1 1.4097 -7.8606 -2.0732 37 1 1.2387 -10.1317 -1.0925 38 1 -0.1862 -9.6203 -0.1565 39 1 -1.3864 -9.1072 -2.2652 40 1 0.0389 -9.6188 -3.2007 41 1 -1.6280 -13.6166 -2.8334 42 1 -3.0445 -12.8266 -2.0976 43 1 -3.6788 -14.3281 -3.9986 44 1 -4.1129 -12.6284 -4.3093 45 1 -1.6261 -14.0737 -5.3370 46 1 -3.0414 -13.5951 -6.3067 47 1 -1.1639 -11.9624 -6.5257 48 1 -2.6104 -11.2208 -5.8003 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000439214367.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:30 Heat of formation + Delta-G solvation = -226.322248 kcal Electronic energy + Delta-G solvation = -26288.209029 eV Core-core repulsion = 22275.092426 eV Total energy + Delta-G solvation = -4013.116603 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.165 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.65691 -38.44773 -38.14212 -37.06444 -36.74351 -36.44984 -34.67320 -34.15140 -32.61040 -30.91030 -29.63863 -26.43332 -25.61101 -25.26701 -24.18161 -22.80782 -22.34659 -21.22038 -20.30126 -18.68794 -18.56626 -18.38148 -17.83240 -17.40825 -17.14624 -16.81659 -16.51755 -16.44700 -16.03520 -15.74253 -15.49801 -15.20835 -14.74311 -14.61606 -14.46514 -14.05795 -13.82722 -13.70412 -13.62414 -13.49214 -13.19810 -13.12015 -12.96396 -12.74586 -12.72542 -12.64129 -12.54004 -12.37584 -12.16319 -12.13340 -12.00792 -11.83957 -11.72630 -11.46937 -11.37682 -11.10431 -10.80610 -10.56443 -10.48449 -10.35582 -8.22251 -6.33047 -0.71653 1.40497 1.42923 1.50863 1.76863 2.29185 2.40248 2.78732 2.97671 3.11237 3.27385 3.73900 3.78668 3.84163 3.91162 3.94111 3.97899 3.99006 4.00656 4.08502 4.26092 4.41272 4.43027 4.50367 4.56167 4.58277 4.65212 4.69330 4.72952 4.79720 4.84629 4.98736 5.01086 5.07966 5.08804 5.10755 5.13528 5.24638 5.33303 5.46215 5.64383 5.80223 6.00486 6.12047 6.20556 6.28906 6.82435 7.36101 8.88911 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.016071 B = 0.001786 C = 0.001669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.852598 B =15677.708970 C =16772.380057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.003 3.997 3 Si 0.963 3.037 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.554 4.554 8 H 0.060 0.940 9 C 0.030 3.970 10 C -0.108 4.108 11 C -0.608 4.608 12 S 2.635 3.365 13 O -0.992 6.992 14 O -0.993 6.993 15 N -1.110 6.110 16 C 0.108 3.892 17 C -0.116 4.116 18 C 0.059 3.941 19 O -0.384 6.384 20 C 0.248 3.752 21 H 0.065 0.935 22 C -0.140 4.140 23 C -0.118 4.118 24 C -0.158 4.158 25 C 0.062 3.938 26 O -0.432 6.432 27 H 0.265 0.735 28 H 0.004 0.996 29 H 0.003 0.997 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.147 0.853 33 H 0.147 0.853 34 H 0.426 0.574 35 H 0.091 0.909 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.090 0.910 39 H 0.070 0.930 40 H 0.055 0.945 41 H 0.067 0.933 42 H 0.088 0.912 43 H 0.087 0.913 44 H 0.076 0.924 45 H 0.065 0.935 46 H 0.096 0.904 47 H 0.104 0.896 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.376 -28.911 -8.522 31.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.196 4.196 3 Si 0.787 3.213 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.592 4.592 8 H 0.078 0.922 9 C -0.008 4.008 10 C -0.147 4.147 11 C -0.739 4.739 12 S 2.730 3.270 13 O -0.982 6.982 14 O -0.983 6.983 15 N -0.871 5.871 16 C -0.018 4.018 17 C -0.155 4.155 18 C -0.018 4.018 19 O -0.304 6.304 20 C 0.153 3.847 21 H 0.082 0.918 22 C -0.177 4.177 23 C -0.156 4.156 24 C -0.196 4.196 25 C -0.013 4.013 26 O -0.355 6.355 27 H 0.074 0.926 28 H 0.023 0.977 29 H 0.021 0.979 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.165 0.835 33 H 0.165 0.835 34 H 0.263 0.737 35 H 0.109 0.891 36 H 0.096 0.904 37 H 0.091 0.909 38 H 0.109 0.891 39 H 0.088 0.912 40 H 0.073 0.927 41 H 0.086 0.914 42 H 0.107 0.893 43 H 0.105 0.895 44 H 0.095 0.905 45 H 0.084 0.916 46 H 0.115 0.885 47 H 0.122 0.878 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.323 -28.787 -8.535 31.158 hybrid contribution -0.553 1.106 0.195 1.251 sum -8.876 -27.682 -8.339 30.242 Atomic orbital electron populations 1.70063 1.07581 1.27924 1.51321 1.25929 0.95832 1.03196 0.94599 0.85537 0.78357 0.78236 0.79165 1.19270 1.20615 1.19304 1.21729 0.93746 0.92594 1.51119 0.92208 1.18967 0.94045 0.91804 0.95969 1.21315 0.98694 0.92578 1.02082 1.30491 1.16645 1.13491 1.13276 1.04064 0.75033 0.75201 0.72696 1.93533 1.71407 1.86296 1.46934 1.93536 1.71843 1.86487 1.46449 1.55258 1.62153 1.41196 1.28540 1.21378 0.94662 0.97605 0.88170 1.21562 0.99968 0.94977 0.99000 1.22515 0.98295 0.82284 0.98694 1.87957 1.69193 1.29979 1.43295 1.23171 0.86935 0.96533 0.78101 0.91786 1.22048 1.00109 0.95082 1.00508 1.21623 0.97680 1.03252 0.93031 1.22244 1.00301 0.97536 0.99480 1.22750 0.96090 0.95700 0.86797 1.87789 1.39319 1.90381 1.17964 0.92648 0.97746 0.97854 0.91632 0.91513 0.83459 0.83483 0.73714 0.89068 0.90434 0.90879 0.89107 0.91165 0.92680 0.91412 0.89319 0.89468 0.90496 0.91623 0.88513 0.87828 0.91904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.48 13.29 21.45 0.28 -55.19 16 2 C 0.00 0.16 5.46 84.65 0.46 0.62 16 3 Si 0.96 44.15 29.54 68.60 2.03 46.17 16 4 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 5 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 6 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 7 C -0.55 -31.46 9.11 25.60 0.23 -31.23 16 8 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 9 C 0.03 1.56 4.97 29.85 0.15 1.70 16 10 C -0.11 -4.31 5.16 30.59 0.16 -4.15 16 11 C -0.61 -17.42 6.07 71.98 0.44 -16.99 16 12 S 2.63 72.52 5.46 -56.49 -0.31 72.21 16 13 O -0.99 -33.78 17.49 -127.65 -2.23 -36.02 16 14 O -0.99 -33.64 18.08 -127.65 -2.31 -35.95 16 15 N -1.11 -21.01 5.89 -187.49 -1.10 -22.11 16 16 C 0.11 1.75 6.13 86.38 0.53 2.28 16 17 C -0.12 -1.73 5.73 30.59 0.18 -1.55 16 18 C 0.06 0.95 5.81 71.98 0.42 1.37 16 19 O -0.38 -7.44 10.26 -126.21 -1.29 -8.73 16 20 C 0.25 3.97 3.16 72.01 0.23 4.20 16 21 H 0.06 0.85 8.09 -2.39 -0.02 0.83 16 22 C -0.14 -1.69 5.79 30.68 0.18 -1.52 16 23 C -0.12 -0.90 6.03 30.72 0.19 -0.72 16 24 C -0.16 -1.27 6.14 30.69 0.19 -1.08 16 25 C 0.06 0.69 6.84 72.01 0.49 1.18 16 26 O -0.43 -7.98 10.25 -126.21 -1.29 -9.28 16 27 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 28 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 29 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 30 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 31 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 32 H 0.15 3.68 8.14 -2.39 -0.02 3.67 16 33 H 0.15 3.58 8.14 -2.39 -0.02 3.56 16 34 H 0.43 6.46 8.62 -96.75 -0.83 5.63 16 35 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.08 1.39 7.69 -2.39 -0.02 1.37 16 37 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.05 0.98 7.89 -2.39 -0.02 0.96 16 41 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.09 0.91 8.14 -2.39 -0.02 0.90 16 43 H 0.09 0.48 8.14 -2.38 -0.02 0.46 16 44 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 45 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 46 H 0.10 0.41 8.14 -2.38 -0.02 0.39 16 47 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 48 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 Total: -1.00 -78.19 402.85 -2.31 -80.50 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: 0.09 Total: 14.27 kcal Atomic # 6 Polarization: -49.71 SS G_CDS: 3.83 Total: -45.88 kcal Atomic # 7 Polarization: -76.49 SS G_CDS: -0.82 Total: -77.31 kcal Atomic # 8 Polarization: -82.85 SS G_CDS: -7.13 Total: -89.98 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.17 kcal Atomic # 16 Polarization: 72.52 SS G_CDS: -0.31 Total: 72.21 kcal Total: -78.19 -2.31 -80.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439214367.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.821 kcal (2) G-P(sol) polarization free energy of solvation -78.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -224.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -226.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds