Wall clock time and date at job start Tue Mar 31 2020 19:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00389 * 2 1 4 4 H 1.48494 * 109.47160 * 270.00361 * 3 2 1 5 5 H 1.48508 * 109.46768 * 30.00398 * 3 2 1 6 6 H 1.48500 * 109.47080 * 149.99978 * 3 2 1 7 7 C 1.37878 * 119.99529 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00303 * 359.97438 * 7 2 1 9 9 C 1.50707 * 119.99911 * 179.97438 * 7 2 1 10 10 C 1.52993 * 109.47014 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47040 * 180.02562 * 10 9 7 12 12 S 1.81401 * 109.47478 * 180.02562 * 11 10 9 13 13 O 1.42099 * 110.54318 * 68.37304 * 12 11 10 14 14 O 1.42106 * 110.54018 * 291.62560 * 12 11 10 15 15 N 1.65599 * 104.44946 * 180.02562 * 12 11 10 16 16 C 1.46499 * 120.00012 * 65.00106 * 15 12 11 17 17 C 1.53000 * 109.46840 * 165.00017 * 16 15 12 18 18 C 1.53001 * 109.46886 * 180.02562 * 17 16 15 19 19 O 1.42898 * 109.47145 * 179.97438 * 18 17 16 20 20 C 1.42902 * 114.00186 * 179.97438 * 19 18 17 21 21 H 1.08998 * 109.48022 * 55.01988 * 20 19 18 22 22 C 1.53090 * 109.48335 * 175.05500 * 20 19 18 23 23 C 1.53176 * 109.16763 * 177.58930 * 22 20 19 24 24 C 1.53181 * 109.03450 * 303.02496 * 23 22 20 25 25 C 1.53087 * 109.16726 * 56.97715 * 24 23 22 26 26 O 1.42903 * 109.47875 * 294.99833 * 20 19 18 27 27 H 0.97005 * 120.00291 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.46528 * 59.99656 * 9 7 2 29 29 H 1.08998 * 109.46755 * 300.00380 * 9 7 2 30 30 H 1.08999 * 109.47593 * 60.00506 * 10 9 7 31 31 H 1.08997 * 109.47315 * 299.99821 * 10 9 7 32 32 H 1.09006 * 109.46978 * 59.99844 * 11 10 9 33 33 H 1.09007 * 109.46839 * 299.99951 * 11 10 9 34 34 H 0.97001 * 119.99797 * 244.99306 * 15 12 11 35 35 H 1.09002 * 109.47391 * 44.99686 * 16 15 12 36 36 H 1.09001 * 109.46813 * 284.99743 * 16 15 12 37 37 H 1.09001 * 109.47194 * 299.99493 * 17 16 15 38 38 H 1.08992 * 109.47399 * 59.99666 * 17 16 15 39 39 H 1.09001 * 109.47109 * 299.99380 * 18 17 16 40 40 H 1.09002 * 109.47508 * 59.99571 * 18 17 16 41 41 H 1.09001 * 109.52107 * 297.49807 * 22 20 19 42 42 H 1.09004 * 109.52248 * 57.68270 * 22 20 19 43 43 H 1.08996 * 109.54751 * 183.15271 * 23 22 20 44 44 H 1.09006 * 109.61361 * 62.92887 * 23 22 20 45 45 H 1.09003 * 109.52051 * 297.07030 * 24 23 22 46 46 H 1.09000 * 109.57133 * 176.91276 * 24 23 22 47 47 H 1.09000 * 109.48181 * 182.41214 * 25 24 23 48 48 H 1.08997 * 109.49085 * 62.37641 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 6 4.0213 -2.6367 -0.0010 11 6 5.5514 -2.6368 -0.0009 12 16 6.1560 -4.3471 -0.0016 13 8 5.8599 -4.9802 -1.2388 14 8 5.8598 -4.9811 1.2352 15 7 7.8057 -4.2021 -0.0007 16 6 8.4879 -3.6045 1.1498 17 6 9.9830 -3.9210 1.0769 18 6 10.6954 -3.2974 2.2787 19 8 12.0918 -3.5935 2.2110 20 6 12.8536 -3.0534 3.2927 21 1 12.4290 -3.3883 4.2391 22 6 14.3036 -3.5327 3.1854 23 6 15.1266 -2.9019 4.3128 24 6 15.0101 -1.3771 4.2234 25 6 13.5328 -0.9811 4.2908 26 8 12.8195 -1.6260 3.2337 27 1 -0.4851 0.8401 0.0004 28 1 3.8751 -0.6805 0.8888 29 1 3.8744 -0.6801 -0.8911 30 1 3.6577 -3.1507 -0.8907 31 1 3.6583 -3.1503 0.8892 32 1 5.9147 -2.1229 0.8891 33 1 5.9147 -2.1230 -0.8910 34 1 8.3202 -4.5130 -0.7620 35 1 8.0741 -4.0147 2.0710 36 1 8.3441 -2.5241 1.1364 37 1 10.1268 -5.0014 1.0902 38 1 10.3968 -3.5108 0.1557 39 1 10.5518 -2.2170 2.2659 40 1 10.2816 -3.7080 3.1997 41 1 14.3358 -4.6186 3.2745 42 1 14.7159 -3.2330 2.2219 43 1 16.1714 -3.1945 4.2093 44 1 14.7468 -3.2407 5.2767 45 1 15.4366 -1.0338 3.2809 46 1 15.5478 -0.9205 5.0544 47 1 13.4410 0.0998 4.1846 48 1 13.1172 -1.2888 5.2503 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000439214369.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:34 Heat of formation + Delta-G solvation = -196.053668 kcal Electronic energy + Delta-G solvation = -26389.345242 eV Core-core repulsion = 22377.541183 eV Total energy + Delta-G solvation = -4011.804059 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.165 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.15124 -37.81262 -36.96246 -36.07282 -35.75584 -34.80835 -34.23573 -32.21283 -31.97189 -30.39110 -28.37690 -25.87300 -24.72636 -23.69624 -23.61488 -22.11022 -20.82604 -20.49020 -19.24354 -17.93612 -17.47449 -17.26740 -16.90743 -16.60636 -16.12463 -15.99780 -15.68569 -15.36040 -15.10794 -14.77633 -14.28114 -14.20267 -14.09774 -14.00295 -13.32532 -13.29099 -12.92802 -12.77201 -12.39177 -12.23511 -12.12858 -11.94504 -11.88472 -11.82609 -11.72157 -11.63437 -11.60186 -11.55652 -11.32375 -11.03189 -10.98216 -10.94728 -10.21406 -10.09276 -9.99621 -9.93391 -9.82209 -9.39923 -9.25052 -8.58715 -6.08326 -4.07593 0.39575 2.66320 2.91544 3.26782 3.34287 3.36262 3.45881 3.89689 4.21084 4.23881 4.31465 4.35787 4.40388 4.42458 4.49284 4.56765 4.61238 4.79096 4.84236 5.00090 5.02848 5.07607 5.09236 5.13435 5.18607 5.21516 5.25165 5.28076 5.35736 5.40687 5.46332 5.51987 5.69723 5.73535 5.76496 5.88022 6.14567 6.26931 6.57436 6.67180 6.77366 6.83925 7.12884 7.26773 7.71137 8.47698 8.96130 9.52760 11.04921 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.012800 B = 0.002018 C = 0.001781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2187.001236 B =13873.145906 C =15719.873212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.067 3.933 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.527 4.527 8 H 0.075 0.925 9 C -0.005 4.005 10 C -0.098 4.098 11 C -0.616 4.616 12 S 2.606 3.394 13 O -0.960 6.960 14 O -0.960 6.960 15 N -1.124 6.124 16 C 0.117 3.883 17 C -0.124 4.124 18 C 0.062 3.938 19 O -0.366 6.366 20 C 0.256 3.744 21 H 0.054 0.946 22 C -0.141 4.141 23 C -0.121 4.121 24 C -0.161 4.161 25 C 0.071 3.929 26 O -0.406 6.406 27 H 0.264 0.736 28 H 0.020 0.980 29 H 0.016 0.984 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.126 0.874 33 H 0.129 0.871 34 H 0.416 0.584 35 H 0.083 0.917 36 H 0.068 0.932 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.065 0.935 40 H 0.054 0.946 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.075 0.925 44 H 0.066 0.934 45 H 0.074 0.926 46 H 0.077 0.923 47 H 0.098 0.902 48 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.405 -4.898 8.588 34.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.135 4.135 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.565 4.565 8 H 0.093 0.907 9 C -0.043 4.043 10 C -0.137 4.137 11 C -0.747 4.747 12 S 2.701 3.299 13 O -0.951 6.951 14 O -0.950 6.950 15 N -0.883 5.883 16 C -0.010 4.010 17 C -0.163 4.163 18 C -0.015 4.015 19 O -0.285 6.285 20 C 0.161 3.839 21 H 0.071 0.929 22 C -0.179 4.179 23 C -0.158 4.158 24 C -0.199 4.199 25 C -0.005 4.005 26 O -0.327 6.327 27 H 0.074 0.926 28 H 0.038 0.962 29 H 0.034 0.966 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.145 0.855 33 H 0.148 0.852 34 H 0.250 0.750 35 H 0.101 0.899 36 H 0.086 0.914 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.083 0.917 40 H 0.073 0.927 41 H 0.100 0.900 42 H 0.100 0.900 43 H 0.094 0.906 44 H 0.085 0.915 45 H 0.093 0.907 46 H 0.096 0.904 47 H 0.116 0.884 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 32.658 -5.577 8.467 34.195 hybrid contribution 0.800 1.603 0.034 1.792 sum 33.458 -3.975 8.501 34.749 Atomic orbital electron populations 1.69912 1.06278 1.26968 1.50703 1.25030 0.94768 0.99182 0.94472 0.86769 0.80308 0.83601 0.78530 1.20234 1.21283 1.19058 1.21139 0.89269 0.94770 1.51328 0.90728 1.19533 0.97326 0.90770 0.96720 1.21311 0.86651 1.02914 1.02835 1.30602 1.09493 1.23448 1.11178 1.05154 0.72575 0.77924 0.74245 1.93590 1.82676 1.73675 1.45135 1.93574 1.82939 1.72779 1.45701 1.55691 1.26605 1.78416 1.27564 1.21152 0.92751 0.98030 0.89075 1.21651 0.93269 1.02586 0.98778 1.22443 0.80423 1.00385 0.98275 1.87995 1.19484 1.72591 1.48469 1.22934 0.91638 0.79910 0.89456 0.92860 1.22023 0.93501 1.01672 1.00690 1.21593 1.00743 0.95128 0.98366 1.22256 0.97628 0.96518 1.03461 1.22525 0.90536 0.97862 0.89594 1.87819 1.74046 1.20051 1.50799 0.92635 0.96189 0.96602 0.90959 0.90941 0.85517 0.85247 0.75047 0.89869 0.91360 0.90172 0.90167 0.91683 0.92737 0.89993 0.90037 0.90622 0.91501 0.90680 0.90407 0.88366 0.92951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.72 13.96 55.43 0.77 -26.95 16 2 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 3 Si 0.88 21.44 27.47 -169.99 -4.67 16.77 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.27 -6.13 6.54 56.52 0.37 -5.76 16 7 C -0.53 -15.02 9.66 -34.44 -0.33 -15.35 16 8 H 0.07 2.28 7.99 -52.49 -0.42 1.86 16 9 C 0.00 -0.11 4.04 -27.88 -0.11 -0.23 16 10 C -0.10 -1.89 5.16 -26.73 -0.14 -2.02 16 11 C -0.62 -8.64 6.07 37.16 0.23 -8.41 16 12 S 2.61 35.75 5.46 -107.50 -0.59 35.17 16 13 O -0.96 -16.21 18.08 -57.54 -1.04 -17.25 16 14 O -0.96 -16.11 17.49 -57.54 -1.01 -17.11 16 15 N -1.12 -11.01 5.89 -10.61 -0.06 -11.07 16 16 C 0.12 0.99 6.13 -4.04 -0.02 0.96 16 17 C -0.12 -0.96 5.73 -26.73 -0.15 -1.11 16 18 C 0.06 0.50 5.80 37.16 0.22 0.72 16 19 O -0.37 -3.50 10.27 -59.04 -0.61 -4.10 16 20 C 0.26 2.04 3.20 37.20 0.12 2.16 16 21 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 22 C -0.14 -0.87 5.79 -26.59 -0.15 -1.02 16 23 C -0.12 -0.53 6.03 -26.55 -0.16 -0.69 16 24 C -0.16 -0.71 6.14 -26.59 -0.16 -0.87 16 25 C 0.07 0.40 6.84 37.20 0.25 0.66 16 26 O -0.41 -3.60 10.03 -59.04 -0.59 -4.19 16 27 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 28 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 29 H 0.02 0.36 7.57 -51.93 -0.39 -0.04 16 30 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 31 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 32 H 0.13 1.51 8.14 -51.92 -0.42 1.09 16 33 H 0.13 1.57 8.14 -51.92 -0.42 1.15 16 34 H 0.42 3.36 8.62 -34.47 -0.30 3.06 16 35 H 0.08 0.73 7.69 -51.93 -0.40 0.33 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.54 7.74 -51.93 -0.40 0.14 16 40 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 44 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 45 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 46 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 47 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 LS Contribution 398.99 15.07 6.01 6.01 Total: -1.00 -36.99 398.99 -10.94 -47.93 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -8.64 Total: -1.85 kcal Atomic # 6 Polarization: -22.83 SS G_CDS: -0.52 Total: -23.35 kcal Atomic # 7 Polarization: -38.73 SS G_CDS: 0.71 Total: -38.02 kcal Atomic # 8 Polarization: -39.41 SS G_CDS: -3.25 Total: -42.66 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.67 Total: 16.77 kcal Atomic # 16 Polarization: 35.75 SS G_CDS: -0.59 Total: 35.17 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -36.99 -10.94 -47.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439214369.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.126 kcal (2) G-P(sol) polarization free energy of solvation -36.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds