Wall clock time and date at job start Tue Mar 31 2020 19:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00389 * 2 1 4 4 H 1.48494 * 109.47160 * 270.00361 * 3 2 1 5 5 H 1.48508 * 109.46768 * 30.00398 * 3 2 1 6 6 H 1.48500 * 109.47080 * 149.99978 * 3 2 1 7 7 C 1.37878 * 119.99529 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00303 * 359.97438 * 7 2 1 9 9 C 1.50707 * 119.99911 * 179.97438 * 7 2 1 10 10 C 1.52993 * 109.47014 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47040 * 180.02562 * 10 9 7 12 12 S 1.81401 * 109.47478 * 180.02562 * 11 10 9 13 13 O 1.42099 * 110.54318 * 68.37304 * 12 11 10 14 14 O 1.42106 * 110.54018 * 291.62560 * 12 11 10 15 15 N 1.65599 * 104.44946 * 180.02562 * 12 11 10 16 16 C 1.46499 * 120.00012 * 65.00106 * 15 12 11 17 17 C 1.53000 * 109.46840 * 165.00017 * 16 15 12 18 18 C 1.53001 * 109.46886 * 180.02562 * 17 16 15 19 19 O 1.42898 * 109.47145 * 179.97438 * 18 17 16 20 20 C 1.42902 * 114.00186 * 179.97438 * 19 18 17 21 21 H 1.08998 * 109.48022 * 55.01988 * 20 19 18 22 22 C 1.53090 * 109.48335 * 175.05500 * 20 19 18 23 23 C 1.53176 * 109.16763 * 177.58930 * 22 20 19 24 24 C 1.53181 * 109.03450 * 303.02496 * 23 22 20 25 25 C 1.53087 * 109.16726 * 56.97715 * 24 23 22 26 26 O 1.42903 * 109.47875 * 294.99833 * 20 19 18 27 27 H 0.97005 * 120.00291 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.46528 * 59.99656 * 9 7 2 29 29 H 1.08998 * 109.46755 * 300.00380 * 9 7 2 30 30 H 1.08999 * 109.47593 * 60.00506 * 10 9 7 31 31 H 1.08997 * 109.47315 * 299.99821 * 10 9 7 32 32 H 1.09006 * 109.46978 * 59.99844 * 11 10 9 33 33 H 1.09007 * 109.46839 * 299.99951 * 11 10 9 34 34 H 0.97001 * 119.99797 * 244.99306 * 15 12 11 35 35 H 1.09002 * 109.47391 * 44.99686 * 16 15 12 36 36 H 1.09001 * 109.46813 * 284.99743 * 16 15 12 37 37 H 1.09001 * 109.47194 * 299.99493 * 17 16 15 38 38 H 1.08992 * 109.47399 * 59.99666 * 17 16 15 39 39 H 1.09001 * 109.47109 * 299.99380 * 18 17 16 40 40 H 1.09002 * 109.47508 * 59.99571 * 18 17 16 41 41 H 1.09001 * 109.52107 * 297.49807 * 22 20 19 42 42 H 1.09004 * 109.52248 * 57.68270 * 22 20 19 43 43 H 1.08996 * 109.54751 * 183.15271 * 23 22 20 44 44 H 1.09006 * 109.61361 * 62.92887 * 23 22 20 45 45 H 1.09003 * 109.52051 * 297.07030 * 24 23 22 46 46 H 1.09000 * 109.57133 * 176.91276 * 24 23 22 47 47 H 1.09000 * 109.48181 * 182.41214 * 25 24 23 48 48 H 1.08997 * 109.49085 * 62.37641 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 6 4.0213 -2.6367 -0.0010 11 6 5.5514 -2.6368 -0.0009 12 16 6.1560 -4.3471 -0.0016 13 8 5.8599 -4.9802 -1.2388 14 8 5.8598 -4.9811 1.2352 15 7 7.8057 -4.2021 -0.0007 16 6 8.4879 -3.6045 1.1498 17 6 9.9830 -3.9210 1.0769 18 6 10.6954 -3.2974 2.2787 19 8 12.0918 -3.5935 2.2110 20 6 12.8536 -3.0534 3.2927 21 1 12.4290 -3.3883 4.2391 22 6 14.3036 -3.5327 3.1854 23 6 15.1266 -2.9019 4.3128 24 6 15.0101 -1.3771 4.2234 25 6 13.5328 -0.9811 4.2908 26 8 12.8195 -1.6260 3.2337 27 1 -0.4851 0.8401 0.0004 28 1 3.8751 -0.6805 0.8888 29 1 3.8744 -0.6801 -0.8911 30 1 3.6577 -3.1507 -0.8907 31 1 3.6583 -3.1503 0.8892 32 1 5.9147 -2.1229 0.8891 33 1 5.9147 -2.1230 -0.8910 34 1 8.3202 -4.5130 -0.7620 35 1 8.0741 -4.0147 2.0710 36 1 8.3441 -2.5241 1.1364 37 1 10.1268 -5.0014 1.0902 38 1 10.3968 -3.5108 0.1557 39 1 10.5518 -2.2170 2.2659 40 1 10.2816 -3.7080 3.1997 41 1 14.3358 -4.6186 3.2745 42 1 14.7159 -3.2330 2.2219 43 1 16.1714 -3.1945 4.2093 44 1 14.7468 -3.2407 5.2767 45 1 15.4366 -1.0338 3.2809 46 1 15.5478 -0.9205 5.0544 47 1 13.4410 0.0998 4.1846 48 1 13.1172 -1.2888 5.2503 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000439214369.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:33 Heat of formation + Delta-G solvation = -223.828432 kcal Electronic energy + Delta-G solvation = -26390.549646 eV Core-core repulsion = 22377.541183 eV Total energy + Delta-G solvation = -4013.008463 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.165 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.66375 -38.43429 -38.13945 -37.06022 -36.73397 -36.48976 -34.67596 -34.24022 -32.60532 -30.90769 -30.14104 -26.44483 -25.38328 -25.24204 -24.18216 -22.76208 -22.20085 -21.23056 -20.31423 -18.97824 -18.57123 -18.46485 -17.84274 -17.40589 -17.22408 -16.82305 -16.40267 -16.26013 -16.10122 -15.74993 -15.51380 -15.20714 -14.88582 -14.66146 -14.63360 -14.05958 -13.81567 -13.71211 -13.65513 -13.58731 -13.22669 -13.17899 -13.11278 -12.80632 -12.68952 -12.54940 -12.50265 -12.35013 -12.15518 -12.02191 -11.84529 -11.83475 -11.63254 -11.46498 -11.40415 -11.26537 -10.79601 -10.77285 -10.48303 -10.35756 -8.29621 -6.35524 -0.71756 1.37180 1.39606 1.51259 1.77449 2.30942 2.36595 2.79338 2.95316 3.05515 3.27541 3.70088 3.79004 3.84180 3.90969 3.94824 3.96704 3.99062 4.01905 4.08824 4.27053 4.35783 4.43437 4.49576 4.56874 4.60129 4.63574 4.68424 4.72542 4.79540 4.84311 4.88716 4.97831 5.00999 5.08812 5.10569 5.14041 5.25457 5.33225 5.35762 5.47176 5.63099 6.02749 6.11979 6.25622 6.26373 6.72802 7.29045 8.87296 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.012800 B = 0.002018 C = 0.001781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2187.001236 B =13873.145906 C =15719.873212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.001 4.001 3 Si 0.956 3.044 4 H -0.266 1.266 5 H -0.286 1.286 6 H -0.237 1.237 7 C -0.544 4.544 8 H 0.029 0.971 9 C -0.006 4.006 10 C -0.105 4.105 11 C -0.610 4.610 12 S 2.630 3.370 13 O -0.995 6.995 14 O -0.993 6.993 15 N -1.109 6.109 16 C 0.108 3.892 17 C -0.117 4.117 18 C 0.060 3.940 19 O -0.385 6.385 20 C 0.249 3.751 21 H 0.063 0.937 22 C -0.140 4.140 23 C -0.119 4.119 24 C -0.158 4.158 25 C 0.063 3.937 26 O -0.430 6.430 27 H 0.267 0.733 28 H 0.033 0.967 29 H 0.030 0.970 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.156 0.844 33 H 0.156 0.844 34 H 0.426 0.574 35 H 0.081 0.919 36 H 0.091 0.909 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.087 0.913 42 H 0.068 0.932 43 H 0.086 0.914 44 H 0.076 0.924 45 H 0.065 0.935 46 H 0.096 0.904 47 H 0.105 0.895 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 36.663 -3.374 9.280 37.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.197 4.197 3 Si 0.778 3.222 4 H -0.191 1.191 5 H -0.212 1.212 6 H -0.160 1.160 7 C -0.582 4.582 8 H 0.047 0.953 9 C -0.044 4.044 10 C -0.144 4.144 11 C -0.741 4.741 12 S 2.725 3.275 13 O -0.985 6.985 14 O -0.983 6.983 15 N -0.871 5.871 16 C -0.018 4.018 17 C -0.156 4.156 18 C -0.017 4.017 19 O -0.305 6.305 20 C 0.154 3.846 21 H 0.080 0.920 22 C -0.178 4.178 23 C -0.156 4.156 24 C -0.196 4.196 25 C -0.013 4.013 26 O -0.352 6.352 27 H 0.075 0.925 28 H 0.052 0.948 29 H 0.049 0.951 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.174 0.826 33 H 0.174 0.826 34 H 0.262 0.738 35 H 0.099 0.901 36 H 0.109 0.891 37 H 0.096 0.904 38 H 0.103 0.897 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.105 0.895 42 H 0.087 0.913 43 H 0.105 0.895 44 H 0.094 0.906 45 H 0.084 0.916 46 H 0.114 0.886 47 H 0.123 0.877 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 35.938 -4.079 9.156 37.309 hybrid contribution -0.234 1.062 -0.157 1.098 sum 35.703 -3.018 8.999 36.944 Atomic orbital electron populations 1.70087 1.08524 1.28285 1.52362 1.26131 0.95722 1.03941 0.93920 0.85578 0.79720 0.77531 0.79329 1.19068 1.21159 1.16031 1.21574 0.92448 0.93250 1.50971 0.95253 1.19514 0.93615 0.93583 0.97737 1.21181 0.90675 1.00363 1.02181 1.30509 1.05318 1.24262 1.14030 1.04173 0.73203 0.77394 0.72689 1.93541 1.83822 1.74690 1.46482 1.93534 1.84024 1.73727 1.46986 1.55263 1.24928 1.78428 1.28509 1.21389 0.92894 0.99290 0.88232 1.21568 0.92667 1.02452 0.98888 1.22482 0.80118 1.00328 0.98763 1.87964 1.20132 1.73011 1.49386 1.23154 0.92331 0.79779 0.89357 0.92000 1.22045 0.92787 1.02108 1.00835 1.21615 1.01042 0.94937 0.98004 1.22242 0.96926 0.96675 1.03745 1.22745 0.91113 0.98110 0.89314 1.87778 1.74810 1.20498 1.52119 0.92465 0.94842 0.95133 0.91961 0.91794 0.82634 0.82612 0.73759 0.90101 0.89099 0.90407 0.89740 0.91877 0.91971 0.89484 0.91323 0.89544 0.90553 0.91584 0.88579 0.87728 0.91933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.24 13.96 21.45 0.30 -59.94 16 2 C 0.00 -0.03 5.47 84.66 0.46 0.43 16 3 Si 0.96 43.21 27.47 68.60 1.88 45.09 16 4 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 5 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 6 H -0.24 -9.56 6.54 99.48 0.65 -8.91 16 7 C -0.54 -31.61 9.66 25.60 0.25 -31.36 16 8 H 0.03 1.89 7.99 -2.91 -0.02 1.87 16 9 C -0.01 -0.27 4.04 29.85 0.12 -0.15 16 10 C -0.10 -3.95 5.16 30.59 0.16 -3.79 16 11 C -0.61 -15.32 6.07 71.98 0.44 -14.88 16 12 S 2.63 68.10 5.46 -56.49 -0.31 67.79 16 13 O -1.00 -32.82 18.08 -127.65 -2.31 -35.13 16 14 O -0.99 -32.45 17.49 -127.65 -2.23 -34.68 16 15 N -1.11 -18.99 5.89 -187.49 -1.10 -20.10 16 16 C 0.11 1.53 6.13 86.38 0.53 2.06 16 17 C -0.12 -1.56 5.73 30.59 0.18 -1.38 16 18 C 0.06 0.88 5.80 71.98 0.42 1.30 16 19 O -0.39 -6.96 10.27 -126.21 -1.30 -8.26 16 20 C 0.25 3.70 3.20 72.01 0.23 3.93 16 21 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 22 C -0.14 -1.58 5.79 30.68 0.18 -1.40 16 23 C -0.12 -0.81 6.03 30.71 0.19 -0.63 16 24 C -0.16 -1.12 6.14 30.68 0.19 -0.94 16 25 C 0.06 0.61 6.84 72.01 0.49 1.11 16 26 O -0.43 -7.17 10.03 -126.21 -1.27 -8.44 16 27 H 0.27 15.66 8.31 -92.70 -0.77 14.89 16 28 H 0.03 1.41 7.20 -2.39 -0.02 1.40 16 29 H 0.03 1.28 7.57 -2.39 -0.02 1.27 16 30 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 31 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 32 H 0.16 3.03 8.14 -2.39 -0.02 3.01 16 33 H 0.16 3.14 8.14 -2.39 -0.02 3.12 16 34 H 0.43 5.85 8.62 -96.75 -0.83 5.02 16 35 H 0.08 1.23 7.69 -2.39 -0.02 1.21 16 36 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.06 0.94 7.74 -2.39 -0.02 0.92 16 40 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 44 H 0.08 0.39 8.14 -2.38 -0.02 0.38 16 45 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 46 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 47 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 48 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 Total: -1.00 -81.92 398.99 -2.47 -84.39 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: 0.03 Total: 14.97 kcal Atomic # 6 Polarization: -49.52 SS G_CDS: 3.82 Total: -45.70 kcal Atomic # 7 Polarization: -79.23 SS G_CDS: -0.80 Total: -80.04 kcal Atomic # 8 Polarization: -79.40 SS G_CDS: -7.10 Total: -86.51 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 1.88 Total: 45.09 kcal Atomic # 16 Polarization: 68.10 SS G_CDS: -0.31 Total: 67.79 kcal Total: -81.92 -2.47 -84.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439214369.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.436 kcal (2) G-P(sol) polarization free energy of solvation -81.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -221.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -223.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds