Wall clock time and date at job start Tue Mar 31 2020 18:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99983 * 2 1 4 4 H 1.48506 * 109.46947 * 269.99945 * 3 2 1 5 5 H 1.48502 * 109.47079 * 29.99811 * 3 2 1 6 6 H 1.48498 * 109.46943 * 150.00025 * 3 2 1 7 7 C 1.37883 * 120.00211 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99719 * 359.97438 * 7 2 1 9 9 C 1.50695 * 120.00223 * 180.02562 * 7 2 1 10 10 C 1.52996 * 109.47084 * 179.97438 * 9 7 2 11 11 O 1.42908 * 109.47004 * 179.97438 * 10 9 7 12 12 C 1.35987 * 116.99857 * 179.97438 * 11 10 9 13 13 C 1.38786 * 120.49578 * 0.23495 * 12 11 10 14 14 C 1.38796 * 118.44446 * 180.28480 * 13 12 11 15 15 C 1.38068 * 119.35204 * 359.46309 * 14 13 12 16 16 N 1.31968 * 120.95553 * 0.29976 * 15 14 13 17 17 C 1.32269 * 121.69253 * 359.97293 * 16 15 14 18 18 N 1.39583 * 119.72900 * 179.97438 * 17 16 15 19 19 C 1.34777 * 119.99701 * 0.02562 * 18 17 16 20 20 O 1.21579 * 120.00596 * 359.97438 * 19 18 17 21 21 N 1.34783 * 119.99847 * 179.97438 * 19 18 17 22 22 C 1.46498 * 120.00230 * 174.97656 * 21 19 18 23 23 C 1.53000 * 115.55292 * 294.60618 * 22 21 19 24 24 C 1.53005 * 109.46940 * 304.93028 * 23 22 21 25 25 O 1.42892 * 109.47101 * 185.03964 * 24 23 22 26 26 C 1.52997 * 117.49675 * 148.93115 * 22 21 19 27 27 C 1.53000 * 117.49672 * 80.27289 * 22 21 19 28 28 H 0.96996 * 120.00019 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.47251 * 59.99348 * 9 7 2 30 30 H 1.08997 * 109.47127 * 299.99976 * 9 7 2 31 31 H 1.09001 * 109.47305 * 60.00201 * 10 9 7 32 32 H 1.09000 * 109.47061 * 299.99622 * 10 9 7 33 33 H 1.07994 * 120.77769 * 0.04723 * 13 12 11 34 34 H 1.07997 * 120.31787 * 179.73341 * 14 13 12 35 35 H 1.08004 * 119.52171 * 180.27706 * 15 14 13 36 36 H 0.96996 * 120.00289 * 180.02562 * 18 17 16 37 37 H 0.97006 * 119.99630 * 354.98708 * 21 19 18 38 38 H 1.09001 * 109.46940 * 64.92876 * 23 22 21 39 39 H 1.08998 * 109.47376 * 184.92949 * 23 22 21 40 40 H 1.08993 * 109.46850 * 305.04356 * 24 23 22 41 41 H 1.09008 * 109.46836 * 65.04079 * 24 23 22 42 42 H 0.96698 * 114.00104 * 180.02562 * 25 24 23 43 43 H 1.09001 * 117.50146 * 0.02562 * 26 22 21 44 44 H 1.09004 * 117.49443 * 145.02531 * 26 22 21 45 45 H 1.08998 * 117.49897 * 214.98111 * 27 22 21 46 46 H 1.09007 * 117.49942 * 359.97438 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0000 10 6 4.0215 -2.6365 -0.0001 11 8 5.4506 -2.6365 -0.0001 12 6 6.0680 -3.8482 0.0003 13 6 5.3222 -5.0186 -0.0041 14 6 5.9961 -6.2320 0.0026 15 6 7.3768 -6.2393 0.0021 16 7 8.0616 -5.1112 0.0013 17 6 7.4601 -3.9332 0.0004 18 7 8.2248 -2.7655 0.0001 19 6 9.5705 -2.8413 0.0002 20 8 10.1183 -3.9267 0.0010 21 7 10.3090 -1.7138 -0.0006 22 6 11.7675 -1.7934 0.1106 23 6 12.2994 -2.3413 1.4364 24 6 11.7285 -1.5192 2.5937 25 8 12.3150 -1.9543 3.8219 26 6 12.5894 -0.7065 -0.5852 27 6 12.5556 -2.1256 -1.1580 28 1 -0.4850 0.8400 -0.0004 29 1 3.8746 -0.6807 0.8905 30 1 3.8752 -0.6797 -0.8894 31 1 3.6586 -3.1502 -0.8903 32 1 3.6579 -3.1505 0.8897 33 1 4.2428 -4.9861 -0.0088 34 1 5.4458 -7.1612 0.0037 35 1 7.9040 -7.1819 0.0027 36 1 7.7879 -1.8995 -0.0002 37 1 9.8746 -0.8496 -0.0747 38 1 11.9970 -3.3827 1.5466 39 1 13.3874 -2.2759 1.4463 40 1 11.9547 -0.4647 2.4365 41 1 10.6480 -1.6563 2.6384 42 1 11.9984 -1.4758 4.6003 43 1 12.0448 0.0680 -1.1253 44 1 13.5092 -0.3821 -0.0985 45 1 13.4532 -2.7341 -1.0480 46 1 11.9888 -2.2854 -2.0753 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455166921.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:09 Heat of formation + Delta-G solvation = -42.454564 kcal Electronic energy + Delta-G solvation = -28555.880440 eV Core-core repulsion = 24447.585738 eV Total energy + Delta-G solvation = -4108.294702 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.02904 -39.98950 -38.28068 -37.73421 -36.76616 -34.73878 -33.46767 -33.02612 -31.61561 -30.87612 -30.65947 -29.08113 -25.66355 -24.13201 -23.64109 -22.89680 -22.69366 -21.57521 -20.58698 -19.87487 -18.68706 -18.16971 -17.77802 -17.48387 -16.60665 -16.35535 -16.00837 -15.94208 -15.45045 -15.22783 -14.83338 -14.57477 -14.30256 -14.29769 -14.10058 -13.99098 -13.60261 -13.11905 -12.79338 -12.58447 -12.38519 -12.23101 -12.06999 -11.84853 -11.72875 -11.27273 -11.13151 -11.01134 -10.76330 -10.53066 -10.39562 -10.31165 -10.17895 -10.08330 -9.96196 -9.47056 -9.30900 -9.15627 -9.10314 -8.72224 -7.70402 -6.22825 -4.24576 1.22942 1.41721 2.26284 3.11837 3.19356 3.27311 3.29768 3.36253 3.42503 3.73333 3.84110 4.01313 4.29080 4.43952 4.57482 4.61222 4.70658 4.89798 4.92554 5.00801 5.06736 5.10871 5.17921 5.22539 5.26294 5.44108 5.45008 5.61727 5.67240 5.74778 5.77230 5.78342 5.96366 6.00519 6.14153 6.28111 6.36559 6.37103 6.49995 6.71101 6.93431 7.08976 7.34175 7.48037 7.59105 7.69384 8.20385 8.28373 8.57518 8.77605 9.36713 10.89667 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010286 B = 0.002875 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2721.596288 B = 9736.681998 C =11379.974782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.073 3.927 3 Si 0.881 3.119 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.264 1.264 7 C -0.529 4.529 8 H 0.075 0.925 9 C -0.007 4.007 10 C 0.074 3.926 11 O -0.321 6.321 12 C 0.063 3.937 13 C -0.144 4.144 14 C -0.162 4.162 15 C 0.079 3.921 16 N -0.441 5.441 17 C 0.348 3.652 18 N -0.662 5.662 19 C 0.698 3.302 20 O -0.523 6.523 21 N -0.719 5.719 22 C 0.126 3.874 23 C -0.090 4.090 24 C 0.082 3.918 25 O -0.575 6.575 26 C -0.172 4.172 27 C -0.165 4.165 28 H 0.267 0.733 29 H 0.027 0.973 30 H 0.023 0.977 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.146 0.854 34 H 0.135 0.865 35 H 0.157 0.843 36 H 0.418 0.582 37 H 0.398 0.602 38 H 0.088 0.912 39 H 0.080 0.920 40 H 0.044 0.956 41 H 0.044 0.956 42 H 0.380 0.620 43 H 0.100 0.900 44 H 0.106 0.894 45 H 0.102 0.898 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.075 -3.629 1.173 23.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.130 4.130 3 Si 0.708 3.292 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.189 1.189 7 C -0.567 4.567 8 H 0.093 0.907 9 C -0.044 4.044 10 C 0.000 4.000 11 O -0.234 6.234 12 C 0.011 3.989 13 C -0.171 4.171 14 C -0.183 4.183 15 C -0.078 4.078 16 N -0.156 5.156 17 C 0.114 3.886 18 N -0.312 5.312 19 C 0.398 3.602 20 O -0.393 6.393 21 N -0.376 5.376 22 C 0.038 3.962 23 C -0.128 4.128 24 C 0.004 3.996 25 O -0.381 6.381 26 C -0.210 4.210 27 C -0.203 4.203 28 H 0.076 0.924 29 H 0.046 0.954 30 H 0.041 0.959 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.164 0.836 34 H 0.153 0.847 35 H 0.174 0.826 36 H 0.255 0.745 37 H 0.233 0.767 38 H 0.107 0.893 39 H 0.099 0.901 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.226 0.774 43 H 0.119 0.881 44 H 0.124 0.876 45 H 0.121 0.879 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 24.760 -4.713 0.786 25.217 hybrid contribution -1.790 2.063 0.232 2.741 sum 22.970 -2.651 1.019 23.145 Atomic orbital electron populations 1.69885 1.06292 1.27314 1.49852 1.24940 0.94762 0.99214 0.94065 0.86751 0.80375 0.83333 0.78727 1.20052 1.21131 1.18854 1.20815 0.88238 0.94985 1.52673 0.90708 1.19574 0.97035 0.90005 0.97825 1.23130 0.74018 1.02199 1.00688 1.86040 1.24520 1.24837 1.88016 1.19491 0.90849 0.86994 1.01556 1.21615 1.01219 0.91354 1.02893 1.21904 0.95533 0.98241 1.02670 1.22436 0.91090 0.95593 0.98674 1.67633 1.38278 0.96189 1.13454 1.17462 0.84055 0.86639 1.00473 1.42487 1.04947 1.07983 1.75806 1.15914 0.80862 0.84784 0.78664 1.91031 1.69957 1.25607 1.52676 1.44494 1.05065 1.07679 1.80319 1.20165 0.78164 1.04396 0.93492 1.21213 1.00474 1.01337 0.89813 1.22045 0.96532 0.96846 0.84149 1.86450 1.69685 1.65077 1.16885 1.23421 1.01559 0.92834 1.03182 1.23336 1.02283 0.97311 0.97362 0.92351 0.95440 0.95856 0.92352 0.92317 0.83611 0.84704 0.82585 0.74482 0.76720 0.89337 0.90099 0.93755 0.93725 0.77366 0.88135 0.87562 0.87926 0.88244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.36 13.96 55.43 0.77 -25.59 16 2 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 3 Si 0.88 20.51 27.47 -169.99 -4.67 15.84 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 5 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.26 -5.86 6.54 56.52 0.37 -5.49 16 7 C -0.53 -14.17 9.66 -34.44 -0.33 -14.51 16 8 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 9 C -0.01 -0.15 4.41 -27.89 -0.12 -0.28 16 10 C 0.07 1.37 4.70 37.16 0.17 1.55 16 11 O -0.32 -5.51 9.39 -19.70 -0.18 -5.69 16 12 C 0.06 1.00 6.72 -38.92 -0.26 0.74 16 13 C -0.14 -2.04 9.14 -39.17 -0.36 -2.40 16 14 C -0.16 -1.98 10.10 -39.44 -0.40 -2.38 16 15 C 0.08 1.06 11.17 -17.56 -0.20 0.86 16 16 N -0.44 -7.27 7.87 -12.22 -0.10 -7.37 16 17 C 0.35 5.58 7.45 -154.44 -1.15 4.43 16 18 N -0.66 -9.23 5.40 -15.67 -0.08 -9.32 16 19 C 0.70 9.76 8.38 -86.91 -0.73 9.03 16 20 O -0.52 -9.15 13.73 5.30 0.07 -9.08 16 21 N -0.72 -7.18 5.02 -52.42 -0.26 -7.45 16 22 C 0.13 1.16 1.68 -131.82 -0.22 0.94 16 23 C -0.09 -0.91 5.40 -26.73 -0.14 -1.06 16 24 C 0.08 0.77 6.84 37.16 0.25 1.02 16 25 O -0.58 -5.75 13.66 -35.23 -0.48 -6.23 16 26 C -0.17 -1.13 10.15 -26.70 -0.27 -1.40 16 27 C -0.16 -1.42 10.18 -26.69 -0.27 -1.69 16 28 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 29 H 0.03 0.62 7.20 -51.93 -0.37 0.24 16 30 H 0.02 0.51 7.57 -51.93 -0.39 0.12 16 31 H 0.06 1.05 7.69 -51.93 -0.40 0.65 16 32 H 0.06 1.06 7.71 -51.93 -0.40 0.66 16 33 H 0.15 1.92 6.44 -52.49 -0.34 1.58 16 34 H 0.14 1.23 8.06 -52.49 -0.42 0.80 16 35 H 0.16 1.65 8.06 -52.48 -0.42 1.23 16 36 H 0.42 4.98 8.06 -40.82 -0.33 4.65 16 37 H 0.40 2.94 8.85 -40.82 -0.36 2.58 16 38 H 0.09 1.18 7.34 -51.93 -0.38 0.80 16 39 H 0.08 0.73 8.09 -51.93 -0.42 0.30 16 40 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.04 0.46 7.96 -51.92 -0.41 0.05 16 42 H 0.38 2.10 9.12 45.56 0.42 2.52 16 43 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 387.85 15.07 5.84 5.84 Total: -1.00 -34.67 387.85 -9.15 -43.82 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -5.94 Total: 8.43 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: -4.13 Total: -3.22 kcal Atomic # 7 Polarization: -50.05 SS G_CDS: 0.33 Total: -49.72 kcal Atomic # 8 Polarization: -20.40 SS G_CDS: -0.59 Total: -21.00 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -4.67 Total: 15.84 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.67 -9.15 -43.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455166921.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.367 kcal (2) G-P(sol) polarization free energy of solvation -34.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds