Wall clock time and date at job start Tue Mar 31 2020 18:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99983 * 2 1 4 4 H 1.48506 * 109.46947 * 269.99945 * 3 2 1 5 5 H 1.48502 * 109.47079 * 29.99811 * 3 2 1 6 6 H 1.48498 * 109.46943 * 150.00025 * 3 2 1 7 7 C 1.37883 * 120.00211 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99719 * 359.97438 * 7 2 1 9 9 C 1.50695 * 120.00223 * 180.02562 * 7 2 1 10 10 C 1.52996 * 109.47084 * 179.97438 * 9 7 2 11 11 O 1.42908 * 109.47004 * 179.97438 * 10 9 7 12 12 C 1.35987 * 116.99857 * 179.97438 * 11 10 9 13 13 C 1.38786 * 120.49578 * 0.23495 * 12 11 10 14 14 C 1.38796 * 118.44446 * 180.28480 * 13 12 11 15 15 C 1.38068 * 119.35204 * 359.46309 * 14 13 12 16 16 N 1.31968 * 120.95553 * 0.29976 * 15 14 13 17 17 C 1.32269 * 121.69253 * 359.97293 * 16 15 14 18 18 N 1.39583 * 119.72900 * 179.97438 * 17 16 15 19 19 C 1.34777 * 119.99701 * 0.02562 * 18 17 16 20 20 O 1.21579 * 120.00596 * 359.97438 * 19 18 17 21 21 N 1.34783 * 119.99847 * 179.97438 * 19 18 17 22 22 C 1.46498 * 120.00230 * 174.97656 * 21 19 18 23 23 C 1.53000 * 115.55292 * 294.60618 * 22 21 19 24 24 C 1.53005 * 109.46940 * 304.93028 * 23 22 21 25 25 O 1.42892 * 109.47101 * 185.03964 * 24 23 22 26 26 C 1.52997 * 117.49675 * 148.93115 * 22 21 19 27 27 C 1.53000 * 117.49672 * 80.27289 * 22 21 19 28 28 H 0.96996 * 120.00019 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.47251 * 59.99348 * 9 7 2 30 30 H 1.08997 * 109.47127 * 299.99976 * 9 7 2 31 31 H 1.09001 * 109.47305 * 60.00201 * 10 9 7 32 32 H 1.09000 * 109.47061 * 299.99622 * 10 9 7 33 33 H 1.07994 * 120.77769 * 0.04723 * 13 12 11 34 34 H 1.07997 * 120.31787 * 179.73341 * 14 13 12 35 35 H 1.08004 * 119.52171 * 180.27706 * 15 14 13 36 36 H 0.96996 * 120.00289 * 180.02562 * 18 17 16 37 37 H 0.97006 * 119.99630 * 354.98708 * 21 19 18 38 38 H 1.09001 * 109.46940 * 64.92876 * 23 22 21 39 39 H 1.08998 * 109.47376 * 184.92949 * 23 22 21 40 40 H 1.08993 * 109.46850 * 305.04356 * 24 23 22 41 41 H 1.09008 * 109.46836 * 65.04079 * 24 23 22 42 42 H 0.96698 * 114.00104 * 180.02562 * 25 24 23 43 43 H 1.09001 * 117.50146 * 0.02562 * 26 22 21 44 44 H 1.09004 * 117.49443 * 145.02531 * 26 22 21 45 45 H 1.08998 * 117.49897 * 214.98111 * 27 22 21 46 46 H 1.09007 * 117.49942 * 359.97438 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0000 10 6 4.0215 -2.6365 -0.0001 11 8 5.4506 -2.6365 -0.0001 12 6 6.0680 -3.8482 0.0003 13 6 5.3222 -5.0186 -0.0041 14 6 5.9961 -6.2320 0.0026 15 6 7.3768 -6.2393 0.0021 16 7 8.0616 -5.1112 0.0013 17 6 7.4601 -3.9332 0.0004 18 7 8.2248 -2.7655 0.0001 19 6 9.5705 -2.8413 0.0002 20 8 10.1183 -3.9267 0.0010 21 7 10.3090 -1.7138 -0.0006 22 6 11.7675 -1.7934 0.1106 23 6 12.2994 -2.3413 1.4364 24 6 11.7285 -1.5192 2.5937 25 8 12.3150 -1.9543 3.8219 26 6 12.5894 -0.7065 -0.5852 27 6 12.5556 -2.1256 -1.1580 28 1 -0.4850 0.8400 -0.0004 29 1 3.8746 -0.6807 0.8905 30 1 3.8752 -0.6797 -0.8894 31 1 3.6586 -3.1502 -0.8903 32 1 3.6579 -3.1505 0.8897 33 1 4.2428 -4.9861 -0.0088 34 1 5.4458 -7.1612 0.0037 35 1 7.9040 -7.1819 0.0027 36 1 7.7879 -1.8995 -0.0002 37 1 9.8746 -0.8496 -0.0747 38 1 11.9970 -3.3827 1.5466 39 1 13.3874 -2.2759 1.4463 40 1 11.9547 -0.4647 2.4365 41 1 10.6480 -1.6563 2.6384 42 1 11.9984 -1.4758 4.6003 43 1 12.0448 0.0680 -1.1253 44 1 13.5092 -0.3821 -0.0985 45 1 13.4532 -2.7341 -1.0480 46 1 11.9888 -2.2854 -2.0753 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000455166921.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:08 Heat of formation + Delta-G solvation = -68.429442 kcal Electronic energy + Delta-G solvation = -28557.006796 eV Core-core repulsion = 24447.585738 eV Total energy + Delta-G solvation = -4109.421057 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.12031 -40.98424 -39.35122 -38.78284 -37.49669 -35.88132 -35.38847 -33.92895 -33.05577 -32.32571 -31.44824 -30.25075 -27.31211 -25.24983 -24.43184 -24.07092 -23.43530 -22.77686 -22.01133 -20.77075 -19.78375 -19.43274 -18.94415 -18.41209 -18.16865 -17.28086 -17.21814 -17.06871 -16.49801 -16.29450 -16.04282 -15.75275 -15.43629 -15.39570 -15.19734 -14.86388 -14.79896 -14.73651 -14.11875 -13.79042 -13.49432 -13.33885 -13.16574 -12.84601 -12.70836 -12.46640 -12.39799 -12.19527 -11.96286 -11.84226 -11.75052 -11.65080 -11.53017 -11.45649 -11.11284 -10.85284 -10.80523 -10.43121 -10.22070 -10.03905 -8.84011 -8.33456 -6.40460 0.14152 0.28843 1.32457 1.37772 1.39366 1.50974 2.08785 2.09397 2.34274 2.70065 2.86070 2.90987 3.02179 3.17885 3.55545 3.82298 3.84753 3.89955 3.94653 4.07443 4.12498 4.20104 4.24195 4.29866 4.32759 4.45428 4.48280 4.67231 4.72393 4.75838 4.93830 4.94553 5.00464 5.05663 5.11374 5.15334 5.20782 5.28113 5.32575 5.47801 5.56013 5.58838 5.78511 6.16740 6.28994 6.66367 6.71762 6.82666 7.16530 7.24852 7.55604 8.82229 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010286 B = 0.002875 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2721.596288 B = 9736.681998 C =11379.974782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.011 3.989 3 Si 0.949 3.051 4 H -0.266 1.266 5 H -0.284 1.284 6 H -0.244 1.244 7 C -0.536 4.536 8 H 0.042 0.958 9 C -0.004 4.004 10 C 0.086 3.914 11 O -0.324 6.324 12 C 0.041 3.959 13 C -0.148 4.148 14 C -0.149 4.149 15 C 0.076 3.924 16 N -0.472 5.472 17 C 0.333 3.667 18 N -0.660 5.660 19 C 0.695 3.305 20 O -0.563 6.563 21 N -0.702 5.702 22 C 0.104 3.896 23 C -0.086 4.086 24 C 0.085 3.915 25 O -0.596 6.596 26 C -0.135 4.135 27 C -0.179 4.179 28 H 0.269 0.731 29 H 0.031 0.969 30 H 0.030 0.970 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.154 0.846 34 H 0.173 0.827 35 H 0.183 0.817 36 H 0.425 0.575 37 H 0.412 0.588 38 H 0.047 0.953 39 H 0.092 0.908 40 H 0.071 0.929 41 H 0.029 0.971 42 H 0.397 0.603 43 H 0.116 0.884 44 H 0.127 0.873 45 H 0.105 0.895 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.032 -2.495 1.128 25.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.187 4.187 3 Si 0.772 3.228 4 H -0.191 1.191 5 H -0.210 1.210 6 H -0.167 1.167 7 C -0.574 4.574 8 H 0.060 0.940 9 C -0.042 4.042 10 C 0.012 3.988 11 O -0.237 6.237 12 C -0.010 4.010 13 C -0.174 4.174 14 C -0.170 4.170 15 C -0.081 4.081 16 N -0.187 5.187 17 C 0.100 3.900 18 N -0.311 5.311 19 C 0.395 3.605 20 O -0.436 6.436 21 N -0.359 5.359 22 C 0.016 3.984 23 C -0.124 4.124 24 C 0.008 3.992 25 O -0.404 6.404 26 C -0.173 4.173 27 C -0.217 4.217 28 H 0.078 0.922 29 H 0.049 0.951 30 H 0.048 0.952 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.172 0.828 34 H 0.190 0.810 35 H 0.200 0.800 36 H 0.264 0.736 37 H 0.250 0.750 38 H 0.066 0.934 39 H 0.111 0.889 40 H 0.089 0.911 41 H 0.047 0.953 42 H 0.247 0.753 43 H 0.134 0.866 44 H 0.145 0.855 45 H 0.124 0.876 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 26.736 -3.542 0.751 26.980 hybrid contribution -2.384 1.533 0.261 2.846 sum 24.352 -2.009 1.012 24.456 Atomic orbital electron populations 1.70033 1.08264 1.28471 1.51678 1.25910 0.95584 1.03442 0.93732 0.85673 0.79612 0.78161 0.79334 1.19057 1.21007 1.16728 1.21129 0.90707 0.93804 1.51772 0.94017 1.19424 0.94117 0.92572 0.98063 1.22753 0.75190 0.99856 1.01042 1.85965 1.23206 1.25813 1.88743 1.19595 0.90950 0.86984 1.03464 1.21875 1.01689 0.91595 1.02252 1.22251 0.95167 0.98990 1.00580 1.23016 0.91962 0.95814 0.97293 1.67686 1.39435 0.97074 1.14555 1.17638 0.84313 0.87179 1.00879 1.42485 1.05011 1.07931 1.75625 1.16116 0.80853 0.85216 0.78315 1.90995 1.70622 1.27396 1.54608 1.44359 1.05410 1.07191 1.78938 1.20313 0.77633 1.07147 0.93319 1.21137 1.01195 0.99170 0.90931 1.22025 0.95455 0.98005 0.83725 1.86407 1.70031 1.66082 1.17907 1.23537 1.01258 0.91669 1.00804 1.23358 1.02238 0.99655 0.96475 0.92205 0.95106 0.95206 0.92052 0.92074 0.82847 0.80995 0.79968 0.73625 0.75048 0.93441 0.88917 0.91085 0.95263 0.75318 0.86563 0.85451 0.87643 0.89547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.68 13.96 21.45 0.30 -56.38 16 2 C 0.01 0.63 5.47 84.66 0.46 1.09 16 3 Si 0.95 41.60 27.47 68.60 1.88 43.48 16 4 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 5 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 6 H -0.24 -9.81 6.54 99.48 0.65 -9.16 16 7 C -0.54 -28.99 9.66 25.60 0.25 -28.74 16 8 H 0.04 2.45 7.99 -2.91 -0.02 2.43 16 9 C 0.00 -0.19 4.41 29.85 0.13 -0.05 16 10 C 0.09 3.15 4.70 71.98 0.34 3.48 16 11 O -0.32 -10.83 9.39 -93.40 -0.88 -11.71 16 12 C 0.04 1.28 6.72 22.70 0.15 1.43 16 13 C -0.15 -3.97 9.14 22.53 0.21 -3.76 16 14 C -0.15 -3.31 10.10 22.36 0.23 -3.08 16 15 C 0.08 1.92 11.17 84.63 0.95 2.87 16 16 N -0.47 -15.50 7.87 -192.59 -1.52 -17.02 16 17 C 0.33 10.66 7.45 132.98 0.99 11.65 16 18 N -0.66 -18.38 5.40 -321.77 -1.74 -20.11 16 19 C 0.70 19.60 8.38 179.05 1.50 21.10 16 20 O -0.56 -20.30 13.73 -3.97 -0.05 -20.36 16 21 N -0.70 -13.47 5.02 -438.02 -2.20 -15.67 16 22 C 0.10 1.79 1.68 3.60 0.01 1.80 16 23 C -0.09 -1.71 5.40 30.60 0.17 -1.54 16 24 C 0.09 1.51 6.84 71.98 0.49 2.00 16 25 O -0.60 -11.35 13.66 -148.98 -2.03 -13.39 16 26 C -0.14 -1.37 10.15 30.62 0.31 -1.05 16 27 C -0.18 -2.92 10.18 30.62 0.31 -2.61 16 28 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 29 H 0.03 1.32 7.20 -2.39 -0.02 1.31 16 30 H 0.03 1.26 7.57 -2.39 -0.02 1.25 16 31 H 0.06 2.18 7.69 -2.39 -0.02 2.16 16 32 H 0.06 2.18 7.71 -2.39 -0.02 2.16 16 33 H 0.15 3.83 6.44 -2.91 -0.02 3.81 16 34 H 0.17 2.49 8.06 -2.91 -0.02 2.46 16 35 H 0.18 3.47 8.06 -2.91 -0.02 3.45 16 36 H 0.43 9.95 8.06 -92.71 -0.75 9.20 16 37 H 0.41 5.42 8.85 -92.70 -0.82 4.60 16 38 H 0.05 1.33 7.34 -2.39 -0.02 1.32 16 39 H 0.09 1.57 8.09 -2.39 -0.02 1.55 16 40 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.03 0.59 7.96 -2.38 -0.02 0.57 16 42 H 0.40 3.92 9.12 -74.06 -0.68 3.25 16 43 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.13 0.82 8.14 -2.39 -0.02 0.80 16 45 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 46 H 0.09 1.63 8.14 -2.38 -0.02 1.61 16 Total: -1.00 -77.33 387.85 -1.01 -78.34 By element: Atomic # 1 Polarization: 29.50 SS G_CDS: -1.26 Total: 28.24 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: 6.49 Total: 4.58 kcal Atomic # 7 Polarization: -104.03 SS G_CDS: -5.15 Total: -109.18 kcal Atomic # 8 Polarization: -42.49 SS G_CDS: -2.97 Total: -45.45 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 1.88 Total: 43.48 kcal Total: -77.33 -1.01 -78.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455166921.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.906 kcal (2) G-P(sol) polarization free energy of solvation -77.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds