Wall clock time and date at job start Tue Mar 31 2020 18:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 119.99900 * 2 1 4 4 H 1.48504 * 109.47025 * 269.99190 * 3 2 1 5 5 H 1.48496 * 109.47352 * 29.99901 * 3 2 1 6 6 H 1.48511 * 109.46991 * 149.99803 * 3 2 1 7 7 C 1.37875 * 119.99915 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00260 * 180.02562 * 7 2 1 9 9 C 1.50708 * 120.00050 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46949 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.46708 * 179.97438 * 10 9 7 12 12 C 1.34784 * 119.99893 * 180.02562 * 11 10 9 13 13 O 1.21588 * 119.99858 * 359.97438 * 12 11 10 14 14 N 1.34773 * 119.99935 * 179.72905 * 12 11 10 15 15 C 1.46496 * 119.99973 * 180.02562 * 14 12 11 16 16 H 1.09003 * 109.47229 * 324.99619 * 15 14 12 17 17 C 1.52996 * 109.47520 * 84.99489 * 15 14 12 18 18 O 1.42899 * 109.46947 * 65.00302 * 17 15 14 19 19 C 1.35042 * 117.00009 * 180.02562 * 18 17 15 20 20 N 1.29838 * 120.00089 * 359.97438 * 19 18 17 21 21 O 1.35037 * 119.99893 * 180.02562 * 19 18 17 22 22 C 1.53001 * 109.47254 * 205.00097 * 15 14 12 23 23 C 1.50693 * 109.47640 * 64.99424 * 22 15 14 24 24 C 1.38233 * 120.00125 * 269.73363 * 23 22 15 25 25 C 1.38236 * 120.00149 * 179.76320 * 24 23 22 26 26 C 1.38241 * 119.99759 * 0.50522 * 25 24 23 27 27 C 1.38233 * 120.00084 * 359.74636 * 26 25 24 28 28 C 1.38235 * 120.00197 * 89.99998 * 23 22 15 29 29 H 0.97000 * 120.00246 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.46827 * 59.99505 * 9 7 2 31 31 H 1.08994 * 109.47143 * 299.99781 * 9 7 2 32 32 H 1.08998 * 109.46692 * 60.00339 * 10 9 7 33 33 H 1.08994 * 109.47584 * 300.00203 * 10 9 7 34 34 H 0.97005 * 120.00261 * 0.02562 * 11 10 9 35 35 H 0.97004 * 120.00018 * 359.97438 * 14 12 11 36 36 H 1.09002 * 109.47126 * 185.00001 * 17 15 14 37 37 H 1.08999 * 109.47024 * 305.00101 * 17 15 14 38 38 H 0.97001 * 120.00383 * 180.02562 * 20 19 18 39 39 H 0.96700 * 113.99922 * 180.02562 * 21 19 18 40 40 H 1.09000 * 109.47382 * 185.00045 * 22 15 14 41 41 H 1.09004 * 109.46936 * 304.99302 * 22 15 14 42 42 H 1.07994 * 120.00186 * 359.97438 * 24 23 22 43 43 H 1.07996 * 120.00530 * 180.22686 * 25 24 23 44 44 H 1.07999 * 119.99952 * 179.72505 * 26 25 24 45 45 H 1.07999 * 120.00062 * 179.97438 * 27 26 25 46 46 H 1.08005 * 119.99698 * 0.02562 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 7 1.5127 -4.9308 0.0012 12 6 2.1866 -6.0981 0.0018 13 8 3.4025 -6.0981 0.0014 14 7 1.5127 -7.2652 0.0079 15 6 2.2451 -8.5339 0.0091 16 1 3.1537 -8.4296 -0.5840 17 6 2.6144 -8.9083 1.4459 18 8 1.4230 -9.1590 2.1940 19 6 1.5745 -9.5037 3.4908 20 7 2.7638 -9.5947 4.0037 21 8 0.4890 -9.7547 4.2540 22 6 1.3657 -9.6312 -0.5939 23 6 1.1034 -9.3237 -2.0456 24 6 0.0007 -8.5713 -2.4045 25 6 -0.2373 -8.2851 -3.7358 26 6 0.6218 -8.7601 -4.7091 27 6 1.7216 -9.5169 -4.3507 28 6 1.9624 -9.7986 -3.0190 29 1 -0.4850 0.8400 -0.0004 30 1 0.6246 -2.5570 -0.8897 31 1 0.6240 -2.5568 0.8903 32 1 2.8718 -3.6043 0.8906 33 1 2.8719 -3.6044 -0.8894 34 1 0.5427 -4.9308 0.0011 35 1 0.5427 -7.2652 0.0122 36 1 3.2349 -9.8045 1.4398 37 1 3.1658 -8.0877 1.9049 38 1 2.8727 -9.8427 4.9352 39 1 0.6973 -9.9930 5.1677 40 1 1.8753 -10.5912 -0.5122 41 1 0.4192 -9.6753 -0.0551 42 1 -0.6731 -8.2042 -1.6445 43 1 -1.0968 -7.6942 -4.0159 44 1 0.4334 -8.5402 -5.7496 45 1 2.3926 -9.8883 -5.1111 46 1 2.8214 -10.3904 -2.7389 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496483723.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:54 Heat of formation + Delta-G solvation = -74.681104 kcal Electronic energy + Delta-G solvation = -28459.552042 eV Core-core repulsion = 24349.859892 eV Total energy + Delta-G solvation = -4109.692150 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.49767 -39.75520 -39.12770 -37.99605 -35.84044 -34.62060 -32.91242 -32.61691 -32.32993 -31.00999 -30.34192 -28.94885 -26.67133 -24.73432 -23.27435 -22.72027 -22.05223 -21.22932 -20.68678 -20.34227 -19.20777 -18.05371 -17.56477 -17.03967 -16.63254 -16.34489 -15.99903 -15.62930 -15.34850 -15.14368 -14.94302 -14.49118 -14.29454 -14.14797 -13.70040 -13.65952 -13.50772 -13.20979 -13.07310 -12.90822 -12.39895 -12.22039 -12.15426 -11.68014 -11.26366 -11.15631 -11.11017 -11.00592 -10.98071 -10.60731 -10.28727 -10.11812 -9.90390 -9.64428 -9.52406 -9.23210 -9.10285 -8.99013 -8.79919 -8.45918 -8.21648 -6.06615 -4.09013 1.22604 1.29647 1.83955 2.21982 3.02948 3.31507 3.37524 3.42320 3.60869 3.64462 4.30377 4.40686 4.43426 4.58536 4.65016 4.72311 4.77417 4.89784 4.97543 5.03664 5.10776 5.21036 5.30536 5.38343 5.42460 5.51725 5.64211 5.76470 5.91136 5.93145 6.06663 6.33455 6.34336 6.40678 6.43969 6.45251 6.61861 6.81660 6.88800 7.04559 7.08307 7.27202 7.60309 7.66991 7.92831 8.01555 8.29107 8.46935 8.95832 9.03498 9.55563 11.05073 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.008015 B = 0.003039 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3492.782066 B = 9210.024679 C =11786.462148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.896 3.104 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.520 4.520 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.141 3.859 11 N -0.737 5.737 12 C 0.701 3.299 13 O -0.599 6.599 14 N -0.742 5.742 15 C 0.177 3.823 16 H 0.115 0.885 17 C 0.074 3.926 18 O -0.290 6.290 19 C 0.533 3.467 20 N -0.799 5.799 21 O -0.508 6.508 22 C -0.089 4.089 23 C -0.080 4.080 24 C -0.109 4.109 25 C -0.116 4.116 26 C -0.124 4.124 27 C -0.119 4.119 28 C -0.117 4.117 29 H 0.261 0.739 30 H 0.022 0.978 31 H 0.022 0.978 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.393 0.607 35 H 0.395 0.605 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.352 0.648 39 H 0.420 0.580 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.120 0.880 43 H 0.122 0.878 44 H 0.119 0.881 45 H 0.120 0.880 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.459 -25.948 -0.097 25.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.558 4.558 8 H 0.078 0.922 9 C -0.024 4.024 10 C 0.018 3.982 11 N -0.390 5.390 12 C 0.401 3.599 13 O -0.478 6.478 14 N -0.398 5.398 15 C 0.070 3.930 16 H 0.133 0.867 17 C -0.002 4.002 18 O -0.195 6.195 19 C 0.270 3.730 20 N -0.470 5.470 21 O -0.306 6.306 22 C -0.127 4.127 23 C -0.080 4.080 24 C -0.127 4.127 25 C -0.134 4.134 26 C -0.142 4.142 27 C -0.137 4.137 28 C -0.135 4.135 29 H 0.071 0.929 30 H 0.040 0.960 31 H 0.040 0.960 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.226 0.774 35 H 0.230 0.770 36 H 0.099 0.901 37 H 0.104 0.896 38 H 0.170 0.830 39 H 0.277 0.723 40 H 0.107 0.893 41 H 0.105 0.895 42 H 0.137 0.863 43 H 0.140 0.860 44 H 0.137 0.863 45 H 0.138 0.862 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -0.346 -25.466 -1.233 25.499 hybrid contribution -0.794 0.658 1.405 1.743 sum -1.139 -24.809 0.172 24.835 Atomic orbital electron populations 1.69958 1.06080 1.26806 1.50528 1.24990 0.94884 0.99375 0.95045 0.86519 0.79861 0.83033 0.78184 1.20573 1.21206 1.19712 1.21057 0.93265 0.90378 1.51149 0.92239 1.19321 0.94255 0.91092 0.97768 1.21575 0.95602 0.80428 1.00578 1.45514 1.09828 1.05309 1.78362 1.16057 0.85638 0.80506 0.77744 1.90887 1.11679 1.86641 1.58555 1.45119 1.09461 1.04017 1.81236 1.20939 0.97053 0.82770 0.92227 0.86697 1.23490 0.83870 1.02640 0.90153 1.85782 1.36728 1.81662 1.15340 1.21435 0.80701 0.85776 0.85073 1.69910 1.19637 1.35367 1.22069 1.84567 1.35043 1.84585 1.26412 1.20896 1.01625 0.98192 0.91958 1.19747 0.95333 0.98070 0.94855 1.21018 0.97315 0.98170 0.96233 1.21172 0.99614 0.99513 0.93100 1.21156 0.95281 0.98315 0.99455 1.21123 0.97608 0.98813 0.96171 1.21032 0.99128 1.00516 0.92812 0.92899 0.95999 0.96007 0.92856 0.92813 0.77434 0.77046 0.90101 0.89626 0.83047 0.72347 0.89270 0.89461 0.86251 0.86039 0.86288 0.86238 0.86122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.33 13.29 55.43 0.74 -25.60 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 6 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.52 -14.60 9.11 -34.44 -0.31 -14.91 16 8 H 0.06 1.64 7.74 -52.49 -0.41 1.24 16 9 C 0.01 0.33 5.09 -27.88 -0.14 0.19 16 10 C 0.14 3.09 5.61 -4.04 -0.02 3.06 16 11 N -0.74 -13.27 5.56 -65.23 -0.36 -13.63 16 12 C 0.70 12.21 8.53 -86.91 -0.74 11.47 16 13 O -0.60 -12.64 16.01 5.29 0.08 -12.56 16 14 N -0.74 -9.36 4.48 -58.68 -0.26 -9.62 16 15 C 0.18 1.90 2.35 -67.93 -0.16 1.74 16 16 H 0.12 1.39 7.58 -51.93 -0.39 1.00 16 17 C 0.07 0.82 5.11 37.16 0.19 1.01 16 18 O -0.29 -3.24 9.34 -40.60 -0.38 -3.62 16 19 C 0.53 5.52 9.25 51.92 0.48 6.00 16 20 N -0.80 -8.24 12.93 29.09 0.38 -7.86 16 21 O -0.51 -4.05 13.61 -40.59 -0.55 -4.60 16 22 C -0.09 -0.74 4.61 -27.89 -0.13 -0.86 16 23 C -0.08 -0.77 4.95 -104.63 -0.52 -1.29 16 24 C -0.11 -1.09 9.11 -39.58 -0.36 -1.45 16 25 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 26 C -0.12 -1.22 10.05 -39.58 -0.40 -1.61 16 27 C -0.12 -1.14 10.05 -39.58 -0.40 -1.53 16 28 C -0.12 -1.11 9.70 -39.58 -0.38 -1.49 16 29 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 30 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.39 6.16 8.49 -40.82 -0.35 5.81 16 35 H 0.40 4.22 7.87 -40.82 -0.32 3.89 16 36 H 0.08 0.77 8.10 -51.93 -0.42 0.35 16 37 H 0.09 1.21 8.10 -51.93 -0.42 0.79 16 38 H 0.35 2.63 8.58 -40.82 -0.35 2.28 16 39 H 0.42 1.00 8.71 45.56 0.40 1.40 16 40 H 0.09 0.59 8.09 -51.93 -0.42 0.17 16 41 H 0.09 0.70 7.67 -51.93 -0.40 0.30 16 42 H 0.12 1.01 7.60 -52.49 -0.40 0.61 16 43 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 44 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 45 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 46 H 0.12 0.92 8.06 -52.48 -0.42 0.49 16 LS Contribution 396.74 15.07 5.98 5.98 Total: -1.00 -35.73 396.74 -8.79 -44.52 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -6.00 Total: 10.11 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: -3.39 Total: 0.31 kcal Atomic # 7 Polarization: -57.20 SS G_CDS: 0.49 Total: -56.71 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: -0.85 Total: -20.77 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -35.73 -8.79 -44.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496483723.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.166 kcal (2) G-P(sol) polarization free energy of solvation -35.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds