Wall clock time and date at job start Tue Mar 31 2020 18:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 119.99900 * 2 1 4 4 H 1.48504 * 109.47025 * 269.99190 * 3 2 1 5 5 H 1.48496 * 109.47352 * 29.99901 * 3 2 1 6 6 H 1.48511 * 109.46991 * 149.99803 * 3 2 1 7 7 C 1.37875 * 119.99915 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00260 * 180.02562 * 7 2 1 9 9 C 1.50708 * 120.00050 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46949 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.46708 * 179.97438 * 10 9 7 12 12 C 1.34784 * 119.99893 * 180.02562 * 11 10 9 13 13 O 1.21588 * 119.99858 * 359.97438 * 12 11 10 14 14 N 1.34773 * 119.99935 * 179.72905 * 12 11 10 15 15 C 1.46496 * 119.99973 * 180.02562 * 14 12 11 16 16 H 1.09003 * 109.47229 * 324.99619 * 15 14 12 17 17 C 1.52996 * 109.47520 * 84.99489 * 15 14 12 18 18 O 1.42899 * 109.46947 * 65.00302 * 17 15 14 19 19 C 1.35042 * 117.00009 * 180.02562 * 18 17 15 20 20 N 1.29838 * 120.00089 * 359.97438 * 19 18 17 21 21 O 1.35037 * 119.99893 * 180.02562 * 19 18 17 22 22 C 1.53001 * 109.47254 * 205.00097 * 15 14 12 23 23 C 1.50693 * 109.47640 * 64.99424 * 22 15 14 24 24 C 1.38233 * 120.00125 * 269.73363 * 23 22 15 25 25 C 1.38236 * 120.00149 * 179.76320 * 24 23 22 26 26 C 1.38241 * 119.99759 * 0.50522 * 25 24 23 27 27 C 1.38233 * 120.00084 * 359.74636 * 26 25 24 28 28 C 1.38235 * 120.00197 * 89.99998 * 23 22 15 29 29 H 0.97000 * 120.00246 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.46827 * 59.99505 * 9 7 2 31 31 H 1.08994 * 109.47143 * 299.99781 * 9 7 2 32 32 H 1.08998 * 109.46692 * 60.00339 * 10 9 7 33 33 H 1.08994 * 109.47584 * 300.00203 * 10 9 7 34 34 H 0.97005 * 120.00261 * 0.02562 * 11 10 9 35 35 H 0.97004 * 120.00018 * 359.97438 * 14 12 11 36 36 H 1.09002 * 109.47126 * 185.00001 * 17 15 14 37 37 H 1.08999 * 109.47024 * 305.00101 * 17 15 14 38 38 H 0.97001 * 120.00383 * 180.02562 * 20 19 18 39 39 H 0.96700 * 113.99922 * 180.02562 * 21 19 18 40 40 H 1.09000 * 109.47382 * 185.00045 * 22 15 14 41 41 H 1.09004 * 109.46936 * 304.99302 * 22 15 14 42 42 H 1.07994 * 120.00186 * 359.97438 * 24 23 22 43 43 H 1.07996 * 120.00530 * 180.22686 * 25 24 23 44 44 H 1.07999 * 119.99952 * 179.72505 * 26 25 24 45 45 H 1.07999 * 120.00062 * 179.97438 * 27 26 25 46 46 H 1.08005 * 119.99698 * 0.02562 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 7 1.5127 -4.9308 0.0012 12 6 2.1866 -6.0981 0.0018 13 8 3.4025 -6.0981 0.0014 14 7 1.5127 -7.2652 0.0079 15 6 2.2451 -8.5339 0.0091 16 1 3.1537 -8.4296 -0.5840 17 6 2.6144 -8.9083 1.4459 18 8 1.4230 -9.1590 2.1940 19 6 1.5745 -9.5037 3.4908 20 7 2.7638 -9.5947 4.0037 21 8 0.4890 -9.7547 4.2540 22 6 1.3657 -9.6312 -0.5939 23 6 1.1034 -9.3237 -2.0456 24 6 0.0007 -8.5713 -2.4045 25 6 -0.2373 -8.2851 -3.7358 26 6 0.6218 -8.7601 -4.7091 27 6 1.7216 -9.5169 -4.3507 28 6 1.9624 -9.7986 -3.0190 29 1 -0.4850 0.8400 -0.0004 30 1 0.6246 -2.5570 -0.8897 31 1 0.6240 -2.5568 0.8903 32 1 2.8718 -3.6043 0.8906 33 1 2.8719 -3.6044 -0.8894 34 1 0.5427 -4.9308 0.0011 35 1 0.5427 -7.2652 0.0122 36 1 3.2349 -9.8045 1.4398 37 1 3.1658 -8.0877 1.9049 38 1 2.8727 -9.8427 4.9352 39 1 0.6973 -9.9930 5.1677 40 1 1.8753 -10.5912 -0.5122 41 1 0.4192 -9.6753 -0.0551 42 1 -0.6731 -8.2042 -1.6445 43 1 -1.0968 -7.6942 -4.0159 44 1 0.4334 -8.5402 -5.7496 45 1 2.3926 -9.8883 -5.1111 46 1 2.8214 -10.3904 -2.7389 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496483723.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:53 Heat of formation + Delta-G solvation = -104.321934 kcal Electronic energy + Delta-G solvation = -28460.837365 eV Core-core repulsion = 24349.859892 eV Total energy + Delta-G solvation = -4110.977473 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.47582 -40.71379 -40.04257 -38.78755 -36.99333 -36.22279 -34.81757 -33.44557 -33.35545 -31.72266 -31.66587 -30.42512 -27.43666 -26.67095 -24.13786 -23.51002 -23.16847 -22.63236 -21.94494 -21.42711 -19.95076 -19.40922 -18.52279 -18.31099 -17.85170 -17.42035 -17.02966 -16.70496 -16.49960 -16.19373 -16.04339 -15.97351 -15.49486 -15.16587 -15.13445 -14.64966 -14.51583 -14.27696 -14.20757 -13.99060 -13.70035 -13.22897 -13.17174 -12.98797 -12.89807 -12.51489 -12.47590 -12.23412 -12.03751 -11.81303 -11.73756 -11.64971 -11.48112 -11.15965 -10.86212 -10.59551 -10.41558 -10.33861 -9.78512 -9.70981 -9.53575 -8.23153 -6.33354 0.49634 0.57238 1.11905 1.42175 1.42844 1.45481 1.54218 1.77443 2.20666 2.42010 2.90975 3.11633 3.35760 3.57674 3.71896 3.88949 3.94862 4.01083 4.17622 4.23714 4.32178 4.36010 4.42651 4.48516 4.53647 4.64521 4.68701 4.72847 4.85617 4.88222 5.02447 5.22622 5.23331 5.33296 5.48020 5.53125 5.55984 5.60625 5.63150 5.69712 5.76481 5.80154 6.05589 6.18296 6.19356 6.38801 6.79737 7.13661 7.35914 7.37727 7.62803 8.88796 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.008015 B = 0.003039 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3492.782066 B = 9210.024679 C =11786.462148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.008 3.992 3 Si 0.965 3.035 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.266 1.266 7 C -0.546 4.546 8 H 0.058 0.942 9 C 0.025 3.975 10 C 0.163 3.837 11 N -0.734 5.734 12 C 0.701 3.299 13 O -0.636 6.636 14 N -0.722 5.722 15 C 0.178 3.822 16 H 0.104 0.896 17 C 0.084 3.916 18 O -0.297 6.297 19 C 0.529 3.471 20 N -0.815 5.815 21 O -0.509 6.509 22 C -0.076 4.076 23 C -0.089 4.089 24 C -0.123 4.123 25 C -0.134 4.134 26 C -0.137 4.137 27 C -0.131 4.131 28 C -0.126 4.126 29 H 0.266 0.734 30 H 0.008 0.992 31 H 0.007 0.993 32 H 0.041 0.959 33 H 0.043 0.957 34 H 0.405 0.595 35 H 0.408 0.592 36 H 0.099 0.901 37 H 0.052 0.948 38 H 0.364 0.636 39 H 0.441 0.559 40 H 0.112 0.888 41 H 0.094 0.906 42 H 0.130 0.870 43 H 0.129 0.871 44 H 0.131 0.869 45 H 0.136 0.864 46 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.418 -26.956 0.111 26.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.191 4.191 3 Si 0.789 3.211 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.191 1.191 7 C -0.585 4.585 8 H 0.077 0.923 9 C -0.013 4.013 10 C 0.038 3.962 11 N -0.388 5.388 12 C 0.401 3.599 13 O -0.518 6.518 14 N -0.379 5.379 15 C 0.072 3.928 16 H 0.121 0.879 17 C 0.009 3.991 18 O -0.202 6.202 19 C 0.265 3.735 20 N -0.487 5.487 21 O -0.310 6.310 22 C -0.113 4.113 23 C -0.089 4.089 24 C -0.141 4.141 25 C -0.152 4.152 26 C -0.155 4.155 27 C -0.149 4.149 28 C -0.144 4.144 29 H 0.074 0.926 30 H 0.026 0.974 31 H 0.026 0.974 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.240 0.760 35 H 0.244 0.756 36 H 0.117 0.883 37 H 0.070 0.930 38 H 0.184 0.816 39 H 0.302 0.698 40 H 0.131 0.869 41 H 0.113 0.887 42 H 0.148 0.852 43 H 0.147 0.853 44 H 0.149 0.851 45 H 0.154 0.846 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -0.348 -26.535 -0.993 26.556 hybrid contribution -0.845 0.888 1.373 1.840 sum -1.192 -25.647 0.380 25.678 Atomic orbital electron populations 1.70060 1.07520 1.27961 1.51053 1.25859 0.95793 1.03045 0.94413 0.85453 0.78639 0.78470 0.78539 1.19730 1.20489 1.19081 1.21464 0.93582 0.91920 1.51487 0.92345 1.19115 0.94208 0.91692 0.96248 1.21035 0.94549 0.81176 0.99429 1.45216 1.10294 1.04534 1.78806 1.16140 0.85178 0.81211 0.77397 1.90862 1.13457 1.87251 1.60199 1.44990 1.10079 1.03264 1.79531 1.21056 0.97054 0.82333 0.92324 0.87862 1.23283 0.83910 1.02180 0.89756 1.85741 1.36526 1.81861 1.16063 1.21424 0.81333 0.85807 0.84918 1.69884 1.20067 1.35507 1.23262 1.84549 1.34259 1.84319 1.27907 1.20838 1.01614 0.97934 0.90918 1.19923 0.95346 0.98130 0.95541 1.21262 0.97847 0.98392 0.96553 1.21417 1.00221 1.00024 0.93514 1.21433 0.95475 0.98415 1.00220 1.21428 0.97841 0.98748 0.96866 1.21351 0.99640 1.00563 0.92873 0.92563 0.97354 0.97436 0.94048 0.93907 0.76002 0.75598 0.88281 0.92956 0.81616 0.69830 0.86931 0.88708 0.85204 0.85289 0.85066 0.84599 0.84339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.73 13.29 21.45 0.28 -54.45 16 2 C 0.01 0.43 5.46 84.65 0.46 0.89 16 3 Si 0.96 44.06 29.54 68.60 2.03 46.09 16 4 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 5 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 6 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 7 C -0.55 -30.98 9.11 25.60 0.23 -30.75 16 8 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 9 C 0.02 1.28 5.09 29.85 0.15 1.43 16 10 C 0.16 7.25 5.61 86.38 0.48 7.74 16 11 N -0.73 -26.55 5.56 -478.53 -2.66 -29.21 16 12 C 0.70 24.39 8.53 179.05 1.53 25.92 16 13 O -0.64 -27.16 16.01 -3.99 -0.06 -27.23 16 14 N -0.72 -17.65 4.48 -457.82 -2.05 -19.70 16 15 C 0.18 3.61 2.35 44.99 0.11 3.72 16 16 H 0.10 2.42 7.58 -2.39 -0.02 2.41 16 17 C 0.08 1.78 5.11 71.98 0.37 2.15 16 18 O -0.30 -6.16 9.34 -60.43 -0.56 -6.73 16 19 C 0.53 10.13 9.25 130.54 1.21 11.34 16 20 N -0.81 -15.77 12.93 -290.70 -3.76 -19.53 16 21 O -0.51 -7.13 13.61 -60.38 -0.82 -7.95 16 22 C -0.08 -1.08 4.61 29.85 0.14 -0.95 16 23 C -0.09 -1.58 4.95 -19.87 -0.10 -1.68 16 24 C -0.12 -2.30 9.11 22.27 0.20 -2.10 16 25 C -0.13 -2.62 10.05 22.27 0.22 -2.39 16 26 C -0.14 -2.59 10.05 22.27 0.22 -2.37 16 27 C -0.13 -2.34 10.05 22.27 0.22 -2.12 16 28 C -0.13 -2.20 9.70 22.27 0.22 -1.98 16 29 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 30 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.04 1.99 8.14 -2.39 -0.02 1.98 16 34 H 0.40 12.61 8.49 -92.70 -0.79 11.83 16 35 H 0.41 8.13 7.87 -92.71 -0.73 7.40 16 36 H 0.10 1.73 8.10 -2.39 -0.02 1.71 16 37 H 0.05 1.48 8.10 -2.39 -0.02 1.46 16 38 H 0.36 4.96 8.58 -92.71 -0.80 4.16 16 39 H 0.44 1.21 8.71 -74.06 -0.65 0.56 16 40 H 0.11 1.15 8.09 -2.39 -0.02 1.13 16 41 H 0.09 1.27 7.67 -2.39 -0.02 1.25 16 42 H 0.13 2.03 7.60 -2.91 -0.02 2.01 16 43 H 0.13 2.19 8.06 -2.91 -0.02 2.16 16 44 H 0.13 2.01 8.06 -2.91 -0.02 1.99 16 45 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16 46 H 0.14 1.81 8.06 -2.91 -0.02 1.79 16 Total: -1.00 -76.54 396.74 -3.86 -80.40 By element: Atomic # 1 Polarization: 31.36 SS G_CDS: -1.92 Total: 29.44 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: 5.67 Total: 8.86 kcal Atomic # 7 Polarization: -114.70 SS G_CDS: -8.19 Total: -122.89 kcal Atomic # 8 Polarization: -40.46 SS G_CDS: -1.45 Total: -41.91 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -76.54 -3.86 -80.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496483723.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.921 kcal (2) G-P(sol) polarization free energy of solvation -76.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds