Wall clock time and date at job start Tue Mar 31 2020 18:58:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86808 * 119.99766 * 2 1 4 4 H 1.48495 * 109.47277 * 270.00236 * 3 2 1 5 5 H 1.48497 * 109.47020 * 30.00743 * 3 2 1 6 6 H 1.48503 * 109.46749 * 150.00097 * 3 2 1 7 7 C 1.37878 * 119.99997 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99572 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00170 * 359.97438 * 7 2 1 10 10 C 1.53036 * 109.46219 * 180.02562 * 9 7 2 11 11 C 1.53185 * 109.31526 * 178.62724 * 10 9 7 12 12 N 1.46926 * 108.77700 * 54.63104 * 11 10 9 13 13 C 1.34783 * 120.63350 * 126.36913 * 12 11 10 14 14 O 1.21582 * 120.00423 * 185.22688 * 13 12 11 15 15 N 1.34775 * 119.99496 * 5.22909 * 13 12 11 16 16 C 1.46501 * 119.99858 * 175.01817 * 15 13 12 17 17 C 1.52998 * 109.47325 * 180.02562 * 16 15 13 18 18 N 1.46501 * 109.47325 * 180.02562 * 17 16 15 19 19 C 1.34775 * 119.99858 * 179.97438 * 18 17 16 20 20 O 1.21693 * 120.00245 * 359.97438 * 19 18 17 21 21 C 1.46656 * 119.99600 * 180.02562 * 19 18 17 22 22 C 1.36543 * 125.98714 * 180.02562 * 21 19 18 23 23 C 1.40369 * 106.71018 * 179.97438 * 22 21 19 24 24 C 1.35128 * 107.11205 * 359.97438 * 23 22 21 25 25 O 1.33929 * 108.76931 * 0.02562 * 24 23 22 26 26 C 1.46924 * 118.73928 * 306.64742 * 12 11 10 27 27 C 1.52758 * 109.00866 * 53.30555 * 26 12 11 28 28 H 0.97002 * 120.00102 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.45590 * 299.97151 * 9 7 2 30 30 H 1.09000 * 109.49987 * 58.67219 * 10 9 7 31 31 H 1.09004 * 109.52272 * 298.59056 * 10 9 7 32 32 H 1.08997 * 109.58872 * 294.84419 * 11 10 9 33 33 H 1.09002 * 109.70823 * 174.48967 * 11 10 9 34 34 H 0.97001 * 120.00546 * 355.01321 * 15 13 12 35 35 H 1.08996 * 109.47205 * 59.99595 * 16 15 13 36 36 H 1.09007 * 109.46985 * 299.99661 * 16 15 13 37 37 H 1.08996 * 109.47470 * 59.99561 * 17 16 15 38 38 H 1.09007 * 109.46652 * 299.99669 * 17 16 15 39 39 H 0.97001 * 119.99595 * 359.97438 * 18 17 16 40 40 H 1.08006 * 126.64926 * 359.97438 * 22 21 19 41 41 H 1.07997 * 126.44044 * 180.02562 * 23 22 21 42 42 H 1.08007 * 125.61392 * 180.26807 * 24 23 22 43 43 H 1.09004 * 109.58728 * 173.14345 * 26 12 11 44 44 H 1.09003 * 109.58849 * 293.56902 * 26 12 11 45 45 H 1.09010 * 109.56378 * 185.55698 * 27 26 12 46 46 H 1.08997 * 109.38796 * 65.51848 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2458 -3.6621 -0.0005 11 6 1.4768 -4.9865 0.0341 12 7 0.5225 -5.0087 -1.0828 13 6 0.5123 -6.0344 -1.9572 14 8 -0.2157 -5.9966 -2.9302 15 7 1.3090 -7.1020 -1.7527 16 6 1.2196 -8.2635 -2.6410 17 6 2.2235 -9.3273 -2.1923 18 7 2.1345 -10.4886 -3.0810 19 6 2.9314 -11.5561 -2.8766 20 8 3.7251 -11.5553 -1.9542 21 6 2.8426 -12.7184 -3.7666 22 6 3.5866 -13.8595 -3.6727 23 6 3.1735 -14.6979 -4.7200 24 6 2.2074 -14.0403 -5.3983 25 8 2.0110 -12.8479 -4.8210 26 6 -0.4163 -3.8884 -1.2322 27 6 0.3702 -2.5790 -1.2494 28 1 -0.4850 0.8401 0.0004 29 1 0.6252 -2.5570 0.8900 30 1 2.8882 -3.5914 0.8771 31 1 2.8562 -3.6194 -0.9026 32 1 0.9373 -5.0713 0.9774 33 1 2.1737 -5.8189 -0.0642 34 1 1.9418 -7.1013 -1.0175 35 1 1.4456 -7.9579 -3.6626 36 1 0.2113 -8.6757 -2.5998 37 1 1.9971 -9.6328 -1.1708 38 1 3.2319 -8.9154 -2.2333 39 1 1.5021 -10.4891 -3.8165 40 1 4.3458 -14.0753 -2.9355 41 1 3.5555 -15.6835 -4.9414 42 1 1.6778 -14.4161 -6.2614 43 1 -0.9666 -3.9950 -2.1671 44 1 -1.1135 -3.8817 -0.3942 45 1 -0.3224 -1.7373 -1.2606 46 1 0.9977 -2.5456 -2.1400 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000541963661.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:01 Heat of formation + Delta-G solvation = -46.274565 kcal Electronic energy + Delta-G solvation = -27777.440626 eV Core-core repulsion = 23668.980276 eV Total energy + Delta-G solvation = -4108.460350 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.14499 -40.14709 -39.74687 -37.15868 -36.04427 -34.25229 -33.56669 -33.41317 -31.20975 -30.79633 -30.16916 -28.64065 -26.12594 -24.28902 -23.03474 -22.73392 -22.20196 -22.04833 -20.85256 -20.20823 -19.19511 -18.84295 -17.68566 -16.87381 -16.83739 -16.46706 -16.19347 -16.06596 -15.67288 -15.08178 -14.62841 -14.55387 -14.26277 -14.04046 -13.70428 -13.52686 -13.48145 -13.18725 -13.14532 -12.88803 -12.69424 -12.37488 -12.09875 -11.94624 -11.79411 -11.13022 -10.93579 -10.81557 -10.66311 -10.55420 -10.43681 -10.06525 -9.84981 -9.68601 -9.56399 -9.20092 -9.16152 -9.09037 -8.90421 -8.36965 -7.92947 -6.01838 -4.08526 0.58508 1.87432 2.13173 2.53167 2.73827 3.16623 3.29072 3.36230 3.38681 3.49027 4.11824 4.23502 4.36334 4.41389 4.41640 4.56555 4.76204 5.09311 5.14989 5.27985 5.28467 5.33970 5.39911 5.55317 5.58774 5.74778 5.78737 5.81903 5.84896 6.03763 6.24640 6.31045 6.41744 6.45038 6.52995 6.60832 6.78176 6.95240 6.97013 7.10196 7.22899 7.46085 7.59495 7.70795 7.93093 8.05854 8.23814 8.40375 8.87019 8.94746 9.56618 11.03552 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.031711 B = 0.001698 C = 0.001656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.749698 B =16481.298520 C =16899.939928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.062 3.938 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.514 4.514 8 H 0.054 0.946 9 C 0.049 3.951 10 C -0.124 4.124 11 C 0.112 3.888 12 N -0.616 5.616 13 C 0.707 3.293 14 O -0.599 6.599 15 N -0.751 5.751 16 C 0.130 3.870 17 C 0.108 3.892 18 N -0.715 5.715 19 C 0.606 3.394 20 O -0.517 6.517 21 C -0.081 4.081 22 C -0.118 4.118 23 C -0.226 4.226 24 C -0.004 4.004 25 O -0.164 6.164 26 C 0.126 3.874 27 C -0.124 4.124 28 H 0.261 0.739 29 H 0.027 0.973 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.064 0.936 33 H 0.059 0.941 34 H 0.398 0.602 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.409 0.591 40 H 0.161 0.839 41 H 0.158 0.842 42 H 0.212 0.788 43 H 0.076 0.924 44 H 0.057 0.943 45 H 0.104 0.896 46 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.311 -27.510 -7.612 28.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.139 4.139 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.552 4.552 8 H 0.073 0.927 9 C 0.031 3.969 10 C -0.162 4.162 11 C -0.011 4.011 12 N -0.353 5.353 13 C 0.409 3.591 14 O -0.478 6.478 15 N -0.411 5.411 16 C 0.005 3.995 17 C -0.016 4.016 18 N -0.367 5.367 19 C 0.392 3.608 20 O -0.394 6.394 21 C -0.133 4.133 22 C -0.138 4.138 23 C -0.245 4.245 24 C -0.073 4.073 25 O -0.059 6.059 26 C 0.005 3.995 27 C -0.163 4.163 28 H 0.071 0.929 29 H 0.046 0.954 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.234 0.766 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.245 0.755 40 H 0.179 0.821 41 H 0.175 0.825 42 H 0.228 0.772 43 H 0.095 0.905 44 H 0.075 0.925 45 H 0.122 0.878 46 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 2.953 -27.066 -7.700 28.295 hybrid contribution 0.655 0.677 -0.060 0.944 sum 3.608 -26.390 -7.760 27.742 Atomic orbital electron populations 1.69841 1.05847 1.26486 1.50700 1.24960 0.94859 0.99055 0.95066 0.86620 0.79857 0.83580 0.78078 1.20750 1.21251 1.20001 1.21184 0.92876 0.90605 1.50539 0.92749 1.18623 0.92578 0.91533 0.94185 1.22014 0.98963 0.94286 1.00980 1.21734 0.91150 0.98996 0.89195 1.47460 1.38170 1.21282 1.28348 1.15773 0.80640 0.79859 0.82851 1.90871 1.45796 1.81021 1.30126 1.45013 1.43852 1.16856 1.35359 1.21121 0.98929 0.84864 0.94636 1.21534 1.00579 0.85123 0.94404 1.45645 1.40833 1.16524 1.33693 1.16476 0.80892 0.80509 0.82939 1.90914 1.37584 1.80410 1.30517 1.22011 0.98845 0.99082 0.93375 1.22020 1.00205 0.91980 0.99612 1.21902 1.01505 1.02709 0.98409 1.24468 0.99905 0.83401 0.99573 1.84069 1.51040 1.34953 1.35865 1.21700 0.90924 0.85617 1.01300 1.21953 1.00147 0.94941 0.99236 0.92947 0.95444 0.92075 0.92880 0.91793 0.92242 0.76552 0.90915 0.91088 0.90177 0.90134 0.75545 0.82110 0.82462 0.77186 0.90517 0.92483 0.87790 0.94367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.65 11.31 55.43 0.63 -24.02 16 2 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 3 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.51 -13.61 8.56 -34.44 -0.29 -13.91 16 8 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 9 C 0.05 1.16 2.07 -91.74 -0.19 0.97 16 10 C -0.12 -2.36 5.30 -26.62 -0.14 -2.50 16 11 C 0.11 1.75 6.39 -3.71 -0.02 1.73 16 12 N -0.62 -10.97 2.98 -178.77 -0.53 -11.50 16 13 C 0.71 12.30 8.30 -86.91 -0.72 11.58 16 14 O -0.60 -12.44 15.77 5.29 0.08 -12.36 16 15 N -0.75 -9.46 5.47 -65.22 -0.36 -9.81 16 16 C 0.13 1.31 5.79 -4.04 -0.02 1.29 16 17 C 0.11 0.91 5.79 -4.04 -0.02 0.89 16 18 N -0.72 -5.87 5.55 -61.63 -0.34 -6.21 16 19 C 0.61 6.21 7.79 -12.86 -0.10 6.11 16 20 O -0.52 -6.87 16.86 5.19 0.09 -6.78 16 21 C -0.08 -0.72 7.13 -36.80 -0.26 -0.98 16 22 C -0.12 -0.92 10.62 -39.39 -0.42 -1.34 16 23 C -0.23 -1.25 10.88 -39.89 -0.43 -1.69 16 24 C 0.00 -0.02 12.08 29.63 0.36 0.34 16 25 O -0.16 -1.21 10.40 5.00 0.05 -1.16 16 26 C 0.13 2.52 6.41 -3.94 -0.03 2.50 16 27 C -0.12 -2.86 5.14 -26.84 -0.14 -3.00 16 28 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 29 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.06 0.72 5.64 -51.93 -0.29 0.43 16 34 H 0.40 4.18 5.96 -40.82 -0.24 3.93 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.41 2.62 8.23 -40.82 -0.34 2.28 16 40 H 0.16 1.16 8.06 -52.48 -0.42 0.73 16 41 H 0.16 0.49 8.06 -52.49 -0.42 0.07 16 42 H 0.21 0.17 8.06 -52.48 -0.42 -0.26 16 43 H 0.08 1.57 6.99 -51.93 -0.36 1.21 16 44 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 45 H 0.10 2.67 6.03 -51.92 -0.31 2.36 16 46 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 381.23 15.07 5.75 5.75 Total: -1.00 -33.53 381.23 -8.78 -42.31 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -6.59 Total: 4.35 kcal Atomic # 6 Polarization: 6.08 SS G_CDS: -2.53 Total: 3.55 kcal Atomic # 7 Polarization: -50.94 SS G_CDS: -0.60 Total: -51.55 kcal Atomic # 8 Polarization: -20.52 SS G_CDS: 0.22 Total: -20.30 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.53 -8.78 -42.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541963661.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.966 kcal (2) G-P(sol) polarization free energy of solvation -33.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds