Wall clock time and date at job start Tue Mar 31 2020 18:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86808 * 119.99766 * 2 1 4 4 H 1.48495 * 109.47277 * 270.00236 * 3 2 1 5 5 H 1.48497 * 109.47020 * 30.00743 * 3 2 1 6 6 H 1.48503 * 109.46749 * 150.00097 * 3 2 1 7 7 C 1.37878 * 119.99997 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99572 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00170 * 359.97438 * 7 2 1 10 10 C 1.53036 * 109.46219 * 180.02562 * 9 7 2 11 11 C 1.53185 * 109.31526 * 178.62724 * 10 9 7 12 12 N 1.46926 * 108.77700 * 54.63104 * 11 10 9 13 13 C 1.34783 * 120.63350 * 126.36913 * 12 11 10 14 14 O 1.21582 * 120.00423 * 185.22688 * 13 12 11 15 15 N 1.34775 * 119.99496 * 5.22909 * 13 12 11 16 16 C 1.46501 * 119.99858 * 175.01817 * 15 13 12 17 17 C 1.52998 * 109.47325 * 180.02562 * 16 15 13 18 18 N 1.46501 * 109.47325 * 180.02562 * 17 16 15 19 19 C 1.34775 * 119.99858 * 179.97438 * 18 17 16 20 20 O 1.21693 * 120.00245 * 359.97438 * 19 18 17 21 21 C 1.46656 * 119.99600 * 180.02562 * 19 18 17 22 22 C 1.36543 * 125.98714 * 180.02562 * 21 19 18 23 23 C 1.40369 * 106.71018 * 179.97438 * 22 21 19 24 24 C 1.35128 * 107.11205 * 359.97438 * 23 22 21 25 25 O 1.33929 * 108.76931 * 0.02562 * 24 23 22 26 26 C 1.46924 * 118.73928 * 306.64742 * 12 11 10 27 27 C 1.52758 * 109.00866 * 53.30555 * 26 12 11 28 28 H 0.97002 * 120.00102 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.45590 * 299.97151 * 9 7 2 30 30 H 1.09000 * 109.49987 * 58.67219 * 10 9 7 31 31 H 1.09004 * 109.52272 * 298.59056 * 10 9 7 32 32 H 1.08997 * 109.58872 * 294.84419 * 11 10 9 33 33 H 1.09002 * 109.70823 * 174.48967 * 11 10 9 34 34 H 0.97001 * 120.00546 * 355.01321 * 15 13 12 35 35 H 1.08996 * 109.47205 * 59.99595 * 16 15 13 36 36 H 1.09007 * 109.46985 * 299.99661 * 16 15 13 37 37 H 1.08996 * 109.47470 * 59.99561 * 17 16 15 38 38 H 1.09007 * 109.46652 * 299.99669 * 17 16 15 39 39 H 0.97001 * 119.99595 * 359.97438 * 18 17 16 40 40 H 1.08006 * 126.64926 * 359.97438 * 22 21 19 41 41 H 1.07997 * 126.44044 * 180.02562 * 23 22 21 42 42 H 1.08007 * 125.61392 * 180.26807 * 24 23 22 43 43 H 1.09004 * 109.58728 * 173.14345 * 26 12 11 44 44 H 1.09003 * 109.58849 * 293.56902 * 26 12 11 45 45 H 1.09010 * 109.56378 * 185.55698 * 27 26 12 46 46 H 1.08997 * 109.38796 * 65.51848 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2458 -3.6621 -0.0005 11 6 1.4768 -4.9865 0.0341 12 7 0.5225 -5.0087 -1.0828 13 6 0.5123 -6.0344 -1.9572 14 8 -0.2157 -5.9966 -2.9302 15 7 1.3090 -7.1020 -1.7527 16 6 1.2196 -8.2635 -2.6410 17 6 2.2235 -9.3273 -2.1923 18 7 2.1345 -10.4886 -3.0810 19 6 2.9314 -11.5561 -2.8766 20 8 3.7251 -11.5553 -1.9542 21 6 2.8426 -12.7184 -3.7666 22 6 3.5866 -13.8595 -3.6727 23 6 3.1735 -14.6979 -4.7200 24 6 2.2074 -14.0403 -5.3983 25 8 2.0110 -12.8479 -4.8210 26 6 -0.4163 -3.8884 -1.2322 27 6 0.3702 -2.5790 -1.2494 28 1 -0.4850 0.8401 0.0004 29 1 0.6252 -2.5570 0.8900 30 1 2.8882 -3.5914 0.8771 31 1 2.8562 -3.6194 -0.9026 32 1 0.9373 -5.0713 0.9774 33 1 2.1737 -5.8189 -0.0642 34 1 1.9418 -7.1013 -1.0175 35 1 1.4456 -7.9579 -3.6626 36 1 0.2113 -8.6757 -2.5998 37 1 1.9971 -9.6328 -1.1708 38 1 3.2319 -8.9154 -2.2333 39 1 1.5021 -10.4891 -3.8165 40 1 4.3458 -14.0753 -2.9355 41 1 3.5555 -15.6835 -4.9414 42 1 1.6778 -14.4161 -6.2614 43 1 -0.9666 -3.9950 -2.1671 44 1 -1.1135 -3.8817 -0.3942 45 1 -0.3224 -1.7373 -1.2606 46 1 0.9977 -2.5456 -2.1400 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000541963661.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:00 Heat of formation + Delta-G solvation = -69.794755 kcal Electronic energy + Delta-G solvation = -27778.460538 eV Core-core repulsion = 23668.980276 eV Total energy + Delta-G solvation = -4109.480262 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.63864 -41.42615 -40.60629 -38.64469 -37.05225 -35.47806 -35.07133 -34.02299 -32.90749 -31.95150 -31.25185 -29.56658 -27.87026 -25.25508 -24.53247 -23.83060 -23.26572 -22.67151 -21.87233 -21.33396 -20.45232 -19.72172 -19.03381 -18.31617 -17.58485 -17.47268 -17.10801 -16.94024 -16.75673 -16.53389 -16.16655 -15.42890 -15.34988 -15.10796 -15.04787 -14.88505 -14.53306 -14.24055 -14.10792 -13.93649 -13.91950 -13.56122 -13.41755 -13.02046 -12.93895 -12.86014 -12.78765 -12.46431 -12.15142 -11.92573 -11.63693 -11.42354 -11.34758 -11.05003 -10.93516 -10.77932 -10.43293 -10.39761 -10.24666 -9.65532 -9.39805 -8.06516 -6.20195 0.00578 1.38373 1.41588 1.42533 1.43503 1.52241 1.77581 2.05386 2.11794 2.23847 2.44624 3.00188 3.20197 3.54768 3.75259 3.95970 4.00732 4.09122 4.13189 4.25854 4.34798 4.36810 4.51400 4.61834 4.62131 4.74251 4.79435 4.80930 4.91244 4.91842 4.96329 4.99871 5.09656 5.20617 5.24751 5.39053 5.42394 5.48319 5.50487 5.66513 5.81340 5.99242 6.04275 6.14066 6.31713 6.40052 6.89357 6.91346 6.96658 7.47888 7.52929 8.96808 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.031711 B = 0.001698 C = 0.001656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.749698 B =16481.298520 C =16899.939928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.014 3.986 3 Si 0.949 3.051 4 H -0.281 1.281 5 H -0.284 1.284 6 H -0.268 1.268 7 C -0.533 4.533 8 H 0.052 0.948 9 C 0.045 3.955 10 C -0.117 4.117 11 C 0.117 3.883 12 N -0.621 5.621 13 C 0.705 3.295 14 O -0.636 6.636 15 N -0.733 5.733 16 C 0.135 3.865 17 C 0.118 3.882 18 N -0.706 5.706 19 C 0.605 3.395 20 O -0.557 6.557 21 C -0.112 4.112 22 C -0.124 4.124 23 C -0.236 4.236 24 C 0.012 3.988 25 O -0.171 6.171 26 C 0.139 3.861 27 C -0.112 4.112 28 H 0.260 0.740 29 H 0.005 0.995 30 H 0.073 0.927 31 H 0.044 0.956 32 H 0.077 0.923 33 H 0.103 0.897 34 H 0.410 0.590 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.418 0.582 40 H 0.159 0.841 41 H 0.182 0.818 42 H 0.254 0.746 43 H 0.068 0.932 44 H 0.062 0.938 45 H 0.073 0.927 46 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.090 -29.694 -8.108 31.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.185 4.185 3 Si 0.776 3.224 4 H -0.207 1.207 5 H -0.210 1.210 6 H -0.192 1.192 7 C -0.571 4.571 8 H 0.070 0.930 9 C 0.026 3.974 10 C -0.155 4.155 11 C -0.006 4.006 12 N -0.357 5.357 13 C 0.406 3.594 14 O -0.518 6.518 15 N -0.393 5.393 16 C 0.010 3.990 17 C -0.006 4.006 18 N -0.358 5.358 19 C 0.392 3.608 20 O -0.437 6.437 21 C -0.163 4.163 22 C -0.145 4.145 23 C -0.255 4.255 24 C -0.058 4.058 25 O -0.067 6.067 26 C 0.016 3.984 27 C -0.151 4.151 28 H 0.069 0.931 29 H 0.024 0.976 30 H 0.092 0.908 31 H 0.063 0.937 32 H 0.095 0.905 33 H 0.120 0.880 34 H 0.250 0.750 35 H 0.087 0.913 36 H 0.092 0.908 37 H 0.103 0.897 38 H 0.099 0.901 39 H 0.255 0.745 40 H 0.177 0.823 41 H 0.199 0.801 42 H 0.270 0.730 43 H 0.086 0.914 44 H 0.080 0.920 45 H 0.091 0.909 46 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 3.756 -29.280 -8.189 30.634 hybrid contribution 0.405 1.278 0.018 1.341 sum 4.161 -28.001 -8.171 29.464 Atomic orbital electron populations 1.69972 1.07003 1.27041 1.51408 1.25692 0.95644 1.02176 0.94992 0.85693 0.78899 0.79918 0.77939 1.20702 1.20996 1.19246 1.21597 0.93055 0.92230 1.50220 0.92989 1.18608 0.93152 0.92530 0.93096 1.21873 0.98159 0.94330 1.01169 1.21831 0.91249 0.98472 0.89006 1.47396 1.38263 1.20874 1.29165 1.15902 0.80836 0.80489 0.82150 1.90848 1.47491 1.81841 1.31605 1.44846 1.42656 1.16035 1.35737 1.21171 0.99635 0.84225 0.93986 1.21396 0.99963 0.84656 0.94602 1.45556 1.40515 1.15962 1.33719 1.16656 0.80406 0.81037 0.82666 1.90880 1.39277 1.81311 1.32262 1.21778 1.00649 0.99222 0.94677 1.22280 0.99839 0.92271 1.00136 1.22235 1.01841 1.03635 0.97769 1.25384 0.98920 0.81967 0.99494 1.84064 1.50844 1.36192 1.35556 1.21340 0.90917 0.85045 1.01112 1.21708 0.99379 0.95749 0.98273 0.93076 0.97650 0.90806 0.93675 0.90471 0.87954 0.75038 0.91285 0.90765 0.89676 0.90092 0.74461 0.82335 0.80068 0.73044 0.91365 0.91962 0.90889 0.96210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.86 11.31 21.45 0.24 -51.61 16 2 C 0.01 0.74 5.30 84.66 0.45 1.19 16 3 Si 0.95 43.23 29.54 68.60 2.03 45.25 16 4 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 5 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 6 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 7 C -0.53 -28.56 8.56 25.60 0.22 -28.34 16 8 H 0.05 2.74 7.74 -2.91 -0.02 2.72 16 9 C 0.04 2.12 2.07 -11.52 -0.02 2.10 16 10 C -0.12 -4.30 5.30 30.67 0.16 -4.14 16 11 C 0.12 3.34 6.39 86.36 0.55 3.90 16 12 N -0.62 -21.34 2.98 -837.76 -2.50 -23.83 16 13 C 0.70 23.50 8.30 179.05 1.49 24.99 16 14 O -0.64 -26.07 15.77 -3.97 -0.06 -26.13 16 15 N -0.73 -16.75 5.47 -478.54 -2.62 -19.36 16 16 C 0.13 2.47 5.79 86.38 0.50 2.97 16 17 C 0.12 1.79 5.79 86.38 0.50 2.29 16 18 N -0.71 -10.82 5.55 -467.10 -2.59 -13.41 16 19 C 0.60 12.18 7.79 86.44 0.67 12.85 16 20 O -0.56 -14.86 16.86 -4.33 -0.07 -14.93 16 21 C -0.11 -1.91 7.13 24.07 0.17 -1.74 16 22 C -0.12 -1.86 10.62 22.39 0.24 -1.63 16 23 C -0.24 -2.08 10.88 22.07 0.24 -1.84 16 24 C 0.01 0.08 12.08 67.10 0.81 0.89 16 25 O -0.17 -2.22 10.40 -5.02 -0.05 -2.28 16 26 C 0.14 5.60 6.41 86.22 0.55 6.15 16 27 C -0.11 -5.32 5.14 30.53 0.16 -5.16 16 28 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16 29 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 30 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 31 H 0.04 1.72 8.14 -2.38 -0.02 1.70 16 32 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.10 2.07 5.64 -2.39 -0.01 2.06 16 34 H 0.41 7.24 5.96 -92.71 -0.55 6.69 16 35 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 37 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 39 H 0.42 4.84 8.23 -92.71 -0.76 4.07 16 40 H 0.16 2.30 8.06 -2.91 -0.02 2.28 16 41 H 0.18 0.60 8.06 -2.91 -0.02 0.58 16 42 H 0.25 -0.72 8.06 -2.91 -0.02 -0.74 16 43 H 0.07 2.86 6.99 -2.39 -0.02 2.84 16 44 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 45 H 0.07 3.91 6.03 -2.38 -0.01 3.90 16 46 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -74.88 381.23 0.77 -74.11 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: -0.30 Total: 17.70 kcal Atomic # 6 Polarization: 7.80 SS G_CDS: 6.69 Total: 14.49 kcal Atomic # 7 Polarization: -100.76 SS G_CDS: -7.46 Total: -108.22 kcal Atomic # 8 Polarization: -43.15 SS G_CDS: -0.19 Total: -43.34 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.25 kcal Total: -74.88 0.77 -74.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541963661.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.319 kcal (2) G-P(sol) polarization free energy of solvation -74.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds