Wall clock time and date at job start Tue Mar 31 2020 19:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86806 * 119.99830 * 2 1 4 4 H 1.48491 * 109.47224 * 269.99866 * 3 2 1 5 5 H 1.48505 * 109.46989 * 30.00250 * 3 2 1 6 6 H 1.48506 * 109.47025 * 149.99784 * 3 2 1 7 7 C 1.37881 * 120.00138 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99653 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99568 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46549 * 179.97438 * 9 7 2 11 11 C 1.53118 * 109.52149 * 184.99775 * 10 9 7 12 12 C 1.53036 * 109.28007 * 182.44032 * 11 10 9 13 13 N 1.46846 * 109.52162 * 59.18140 * 12 11 10 14 14 C 1.46909 * 111.00243 * 174.15828 * 13 12 11 15 15 C 1.52999 * 109.47025 * 170.00251 * 14 13 12 16 16 N 1.46501 * 109.46756 * 180.02562 * 15 14 13 17 17 C 1.35763 * 119.62834 * 89.99657 * 16 15 14 18 18 C 1.35346 * 120.70328 * 180.02562 * 17 16 15 19 19 N 1.48002 * 120.02606 * 180.02562 * 18 17 16 20 20 O 1.21805 * 120.00093 * 359.97438 * 19 18 17 21 21 O 1.21793 * 120.00358 * 179.97438 * 19 18 17 22 22 C 1.40191 * 119.94768 * 359.97438 * 18 17 16 23 23 C 1.36404 * 119.26851 * 0.02562 * 22 18 17 24 24 C 1.34659 * 119.62260 * 269.72788 * 16 15 14 25 25 O 1.22065 * 119.98277 * 359.97438 * 24 16 15 26 26 C 1.46846 * 111.19997 * 298.26076 * 13 12 11 27 27 C 1.53030 * 109.52377 * 61.74000 * 26 13 12 28 28 H 0.96999 * 119.99832 * 359.97438 * 1 2 3 29 29 H 1.08995 * 109.47385 * 60.00426 * 9 7 2 30 30 H 1.09001 * 109.47246 * 299.99560 * 9 7 2 31 31 H 1.08993 * 109.57759 * 305.15873 * 10 9 7 32 32 H 1.09008 * 109.50062 * 62.50560 * 11 10 9 33 33 H 1.09002 * 109.53946 * 302.40314 * 11 10 9 34 34 H 1.08998 * 109.46728 * 299.16963 * 12 11 10 35 35 H 1.09003 * 109.45634 * 179.19307 * 12 11 10 36 36 H 1.09000 * 109.47285 * 290.00268 * 14 13 12 37 37 H 1.09003 * 109.46644 * 50.00315 * 14 13 12 38 38 H 1.09000 * 109.47102 * 300.00128 * 15 14 13 39 39 H 1.08999 * 109.47491 * 59.99991 * 15 14 13 40 40 H 1.08000 * 119.64466 * 0.02562 * 17 16 15 41 41 H 1.07997 * 120.36531 * 180.02562 * 22 18 17 42 42 H 1.07990 * 120.35009 * 180.02562 * 23 22 18 43 43 H 1.08999 * 109.46373 * 181.76104 * 26 13 12 44 44 H 1.08998 * 109.45881 * 301.72191 * 26 13 12 45 45 H 1.09003 * 109.50272 * 180.88314 * 27 26 13 46 46 H 1.09003 * 109.50540 * 60.76497 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0018 11 6 1.4851 -4.9851 -0.1276 12 6 2.4793 -6.1469 -0.0670 13 7 3.2108 -6.1011 1.2055 14 6 4.0749 -7.2792 1.3588 15 6 4.9993 -7.0805 2.5617 16 7 5.8615 -8.2551 2.7142 17 6 7.0624 -8.2928 2.0820 18 6 7.8758 -9.3673 2.2073 19 7 9.1821 -9.3923 1.5119 20 8 9.5252 -8.4460 0.8261 21 8 9.9140 -10.3592 1.6253 22 6 7.4806 -10.4559 2.9972 23 6 6.2738 -10.4163 3.6316 24 6 5.4562 -9.2828 3.4842 25 8 4.3761 -9.2317 4.0506 26 6 3.9862 -4.8601 1.3278 27 6 3.0369 -3.6599 1.3089 28 1 -0.4850 0.8400 0.0004 29 1 0.6241 -2.5567 -0.8903 30 1 0.6248 -2.5571 0.8897 31 1 2.9315 -3.5549 -0.8419 32 1 0.9535 -5.0103 -1.0789 33 1 0.7709 -5.0744 0.6910 34 1 3.1844 -6.0651 -0.8942 35 1 1.9396 -7.0910 -0.1419 36 1 3.4583 -8.1640 1.5167 37 1 4.6742 -7.4099 0.4577 38 1 5.6159 -6.1956 2.4038 39 1 4.4001 -6.9497 3.4628 40 1 7.3718 -7.4566 1.4726 41 1 8.1246 -11.3165 3.1022 42 1 5.9521 -11.2450 4.2447 43 1 4.5411 -4.8695 2.2660 44 1 4.6842 -4.7843 0.4941 45 1 3.6141 -2.7383 1.3840 46 1 2.3475 -3.7279 2.1505 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565773593.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:05 Heat of formation + Delta-G solvation = -5.459318 kcal Electronic energy + Delta-G solvation = -28503.621962 eV Core-core repulsion = 24396.931494 eV Total energy + Delta-G solvation = -4106.690468 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.86283 -41.98863 -39.13495 -37.86618 -36.97298 -36.14685 -34.48916 -32.46424 -31.58722 -30.77245 -29.85477 -27.64173 -26.76444 -25.15359 -24.34612 -23.36223 -23.19545 -21.92574 -20.72218 -19.97354 -19.34516 -19.07300 -18.05937 -17.98309 -17.62963 -17.12912 -16.42150 -16.26119 -15.60652 -15.19256 -15.12187 -14.62263 -14.50805 -14.27140 -13.75740 -13.54622 -13.46520 -13.22308 -13.07839 -12.51030 -12.47009 -12.06000 -11.99308 -11.86839 -11.67163 -11.57516 -11.53391 -11.23240 -11.05702 -10.92726 -10.81792 -10.79188 -10.66836 -10.34400 -10.05460 -9.63664 -9.19592 -9.11559 -8.95292 -8.40532 -8.35689 -6.02008 -4.04002 -0.54708 0.01368 0.72201 1.11653 1.74754 2.65823 3.28786 3.35753 3.37582 3.44006 3.53461 3.75274 3.83766 4.11682 4.24672 4.29966 4.42968 4.76138 4.78648 4.93938 4.98465 5.08203 5.19012 5.22648 5.29953 5.33479 5.40642 5.45690 5.53105 5.69938 5.76811 5.87648 5.96246 5.99578 6.07622 6.29772 6.41437 6.53378 6.84356 6.92998 7.04532 7.06761 7.09563 7.14726 7.21071 7.64813 7.80456 7.97977 8.40330 9.02498 9.59780 11.09215 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.017209 B = 0.002183 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.640541 B =12821.777772 C =13696.819268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.889 3.111 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.516 4.516 8 H 0.054 0.946 9 C 0.028 3.972 10 C -0.082 4.082 11 C -0.112 4.112 12 C 0.061 3.939 13 N -0.529 5.529 14 C 0.043 3.957 15 C 0.077 3.923 16 N -0.479 5.479 17 C 0.242 3.758 18 C -0.155 4.155 19 N 0.050 4.950 20 O -0.171 6.171 21 O -0.157 6.157 22 C 0.002 3.998 23 C -0.215 4.215 24 C 0.514 3.486 25 O -0.502 6.502 26 C 0.043 3.957 27 C -0.100 4.100 28 H 0.260 0.740 29 H 0.014 0.986 30 H 0.017 0.983 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.031 0.969 35 H 0.067 0.933 36 H 0.084 0.916 37 H 0.037 0.963 38 H 0.108 0.892 39 H 0.125 0.875 40 H 0.193 0.807 41 H 0.163 0.837 42 H 0.172 0.828 43 H 0.069 0.931 44 H 0.032 0.968 45 H 0.075 0.925 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.801 -21.339 5.260 26.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.717 3.283 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.554 4.554 8 H 0.073 0.927 9 C -0.009 4.009 10 C -0.100 4.100 11 C -0.150 4.150 12 C -0.066 4.066 13 N -0.254 5.254 14 C -0.085 4.085 15 C -0.043 4.043 16 N -0.188 5.188 17 C 0.105 3.895 18 C -0.246 4.246 19 N 0.567 4.433 20 O -0.383 6.383 21 O -0.372 6.372 22 C -0.019 4.019 23 C -0.237 4.237 24 C 0.314 3.686 25 O -0.379 6.379 26 C -0.084 4.084 27 C -0.138 4.138 28 H 0.070 0.930 29 H 0.033 0.967 30 H 0.035 0.965 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.050 0.950 35 H 0.086 0.914 36 H 0.102 0.898 37 H 0.055 0.945 38 H 0.126 0.874 39 H 0.143 0.857 40 H 0.210 0.790 41 H 0.180 0.820 42 H 0.189 0.811 43 H 0.087 0.913 44 H 0.050 0.950 45 H 0.094 0.906 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 12.871 -21.140 6.374 25.557 hybrid contribution 1.456 0.951 -0.939 1.977 sum 14.327 -20.189 5.436 25.345 Atomic orbital electron populations 1.69962 1.06033 1.26531 1.50914 1.25027 0.94808 0.99174 0.95487 0.86651 0.79849 0.83764 0.78055 1.20758 1.21277 1.19933 1.21229 0.92861 0.91003 1.50337 0.92734 1.19112 0.93597 0.90989 0.97202 1.21245 0.97948 0.94814 0.96024 1.21707 0.97485 0.93993 1.01833 1.22137 0.96401 0.99914 0.88169 1.62029 1.26874 1.00850 1.35683 1.22366 0.94961 0.96253 0.94955 1.22662 0.93846 0.84389 1.03395 1.45939 1.14937 1.19743 1.38139 1.21787 0.82978 0.97066 0.87668 1.20059 0.90083 1.01331 1.13104 1.43012 1.01339 1.00072 0.98886 1.94585 1.78468 1.27862 1.37350 1.94560 1.49761 1.25217 1.67687 1.21092 0.95659 0.96055 0.89140 1.22171 0.94802 1.00175 1.06577 1.17457 0.88193 0.83198 0.79750 1.91082 1.21684 1.79468 1.45635 1.22427 0.95898 0.90372 0.99689 1.21556 0.97844 0.95224 0.99146 0.93041 0.96731 0.96462 0.92961 0.91845 0.91383 0.95041 0.91424 0.89792 0.94484 0.87396 0.85686 0.79006 0.81990 0.81094 0.91321 0.94973 0.90607 0.91619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.44 13.29 55.43 0.74 -25.70 16 2 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 3 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.52 -13.90 8.45 -34.44 -0.29 -14.19 16 8 H 0.05 1.42 7.08 -52.49 -0.37 1.05 16 9 C 0.03 0.69 4.45 -27.88 -0.12 0.56 16 10 C -0.08 -1.55 2.20 -90.49 -0.20 -1.75 16 11 C -0.11 -1.80 5.38 -26.65 -0.14 -1.95 16 12 C 0.06 0.79 5.42 -3.84 -0.02 0.77 16 13 N -0.53 -6.47 4.81 -234.67 -1.13 -7.60 16 14 C 0.04 0.41 5.60 -3.82 -0.02 0.38 16 15 C 0.08 0.58 4.59 -4.04 -0.02 0.57 16 16 N -0.48 -3.38 2.58 -119.77 -0.31 -3.68 16 17 C 0.24 1.38 9.81 -16.84 -0.17 1.21 16 18 C -0.15 -1.05 6.82 -80.25 -0.55 -1.60 16 19 N 0.05 0.46 4.45 33.81 0.15 0.61 16 20 O -0.17 -1.73 18.40 -29.46 -0.54 -2.27 16 21 O -0.16 -1.58 18.50 -29.46 -0.54 -2.12 16 22 C 0.00 0.01 9.59 -39.51 -0.38 -0.37 16 23 C -0.21 -1.34 9.99 -39.38 -0.39 -1.74 16 24 C 0.51 4.56 7.41 -15.45 -0.11 4.44 16 25 O -0.50 -6.32 16.64 4.86 0.08 -6.24 16 26 C 0.04 0.54 4.85 -3.84 -0.02 0.52 16 27 C -0.10 -1.69 5.15 -26.65 -0.14 -1.82 16 28 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 29 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.06 1.00 8.14 -51.92 -0.42 0.58 16 33 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.80 8.12 -51.93 -0.42 0.37 16 36 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.04 0.31 8.08 -51.93 -0.42 -0.11 16 38 H 0.11 0.61 6.08 -51.93 -0.32 0.30 16 39 H 0.13 1.15 7.38 -51.93 -0.38 0.77 16 40 H 0.19 0.68 7.51 -52.49 -0.39 0.28 16 41 H 0.16 0.61 7.67 -52.49 -0.40 0.21 16 42 H 0.17 0.77 8.06 -52.49 -0.42 0.35 16 43 H 0.07 0.70 5.81 -51.93 -0.30 0.40 16 44 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.08 1.37 7.05 -51.93 -0.37 1.01 16 46 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 LS Contribution 379.11 15.07 5.71 5.71 Total: -1.00 -32.40 379.11 -10.27 -42.67 By element: Atomic # 1 Polarization: 2.71 SS G_CDS: -6.74 Total: -4.03 kcal Atomic # 6 Polarization: -10.81 SS G_CDS: -2.67 Total: -13.48 kcal Atomic # 7 Polarization: -35.83 SS G_CDS: -0.55 Total: -36.38 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: -1.01 Total: -10.63 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.40 -10.27 -42.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565773593.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.212 kcal (2) G-P(sol) polarization free energy of solvation -32.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds