Wall clock time and date at job start Tue Mar 31 2020 19:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86806 * 119.99830 * 2 1 4 4 H 1.48491 * 109.47224 * 269.99866 * 3 2 1 5 5 H 1.48505 * 109.46989 * 30.00250 * 3 2 1 6 6 H 1.48506 * 109.47025 * 149.99784 * 3 2 1 7 7 C 1.37881 * 120.00138 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99653 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99568 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46549 * 179.97438 * 9 7 2 11 11 C 1.53118 * 109.52149 * 184.99775 * 10 9 7 12 12 C 1.53036 * 109.28007 * 182.44032 * 11 10 9 13 13 N 1.46846 * 109.52162 * 59.18140 * 12 11 10 14 14 C 1.46909 * 111.00243 * 174.15828 * 13 12 11 15 15 C 1.52999 * 109.47025 * 170.00251 * 14 13 12 16 16 N 1.46501 * 109.46756 * 180.02562 * 15 14 13 17 17 C 1.35763 * 119.62834 * 89.99657 * 16 15 14 18 18 C 1.35346 * 120.70328 * 180.02562 * 17 16 15 19 19 N 1.48002 * 120.02606 * 180.02562 * 18 17 16 20 20 O 1.21805 * 120.00093 * 359.97438 * 19 18 17 21 21 O 1.21793 * 120.00358 * 179.97438 * 19 18 17 22 22 C 1.40191 * 119.94768 * 359.97438 * 18 17 16 23 23 C 1.36404 * 119.26851 * 0.02562 * 22 18 17 24 24 C 1.34659 * 119.62260 * 269.72788 * 16 15 14 25 25 O 1.22065 * 119.98277 * 359.97438 * 24 16 15 26 26 C 1.46846 * 111.19997 * 298.26076 * 13 12 11 27 27 C 1.53030 * 109.52377 * 61.74000 * 26 13 12 28 28 H 0.96999 * 119.99832 * 359.97438 * 1 2 3 29 29 H 1.08995 * 109.47385 * 60.00426 * 9 7 2 30 30 H 1.09001 * 109.47246 * 299.99560 * 9 7 2 31 31 H 1.08993 * 109.57759 * 305.15873 * 10 9 7 32 32 H 1.09008 * 109.50062 * 62.50560 * 11 10 9 33 33 H 1.09002 * 109.53946 * 302.40314 * 11 10 9 34 34 H 1.08998 * 109.46728 * 299.16963 * 12 11 10 35 35 H 1.09003 * 109.45634 * 179.19307 * 12 11 10 36 36 H 1.09000 * 109.47285 * 290.00268 * 14 13 12 37 37 H 1.09003 * 109.46644 * 50.00315 * 14 13 12 38 38 H 1.09000 * 109.47102 * 300.00128 * 15 14 13 39 39 H 1.08999 * 109.47491 * 59.99991 * 15 14 13 40 40 H 1.08000 * 119.64466 * 0.02562 * 17 16 15 41 41 H 1.07997 * 120.36531 * 180.02562 * 22 18 17 42 42 H 1.07990 * 120.35009 * 180.02562 * 23 22 18 43 43 H 1.08999 * 109.46373 * 181.76104 * 26 13 12 44 44 H 1.08998 * 109.45881 * 301.72191 * 26 13 12 45 45 H 1.09003 * 109.50272 * 180.88314 * 27 26 13 46 46 H 1.09003 * 109.50540 * 60.76497 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0018 11 6 1.4851 -4.9851 -0.1276 12 6 2.4793 -6.1469 -0.0670 13 7 3.2108 -6.1011 1.2055 14 6 4.0749 -7.2792 1.3588 15 6 4.9993 -7.0805 2.5617 16 7 5.8615 -8.2551 2.7142 17 6 7.0624 -8.2928 2.0820 18 6 7.8758 -9.3673 2.2073 19 7 9.1821 -9.3923 1.5119 20 8 9.5252 -8.4460 0.8261 21 8 9.9140 -10.3592 1.6253 22 6 7.4806 -10.4559 2.9972 23 6 6.2738 -10.4163 3.6316 24 6 5.4562 -9.2828 3.4842 25 8 4.3761 -9.2317 4.0506 26 6 3.9862 -4.8601 1.3278 27 6 3.0369 -3.6599 1.3089 28 1 -0.4850 0.8400 0.0004 29 1 0.6241 -2.5567 -0.8903 30 1 0.6248 -2.5571 0.8897 31 1 2.9315 -3.5549 -0.8419 32 1 0.9535 -5.0103 -1.0789 33 1 0.7709 -5.0744 0.6910 34 1 3.1844 -6.0651 -0.8942 35 1 1.9396 -7.0910 -0.1419 36 1 3.4583 -8.1640 1.5167 37 1 4.6742 -7.4099 0.4577 38 1 5.6159 -6.1956 2.4038 39 1 4.4001 -6.9497 3.4628 40 1 7.3718 -7.4566 1.4726 41 1 8.1246 -11.3165 3.1022 42 1 5.9521 -11.2450 4.2447 43 1 4.5411 -4.8695 2.2660 44 1 4.6842 -4.7843 0.4941 45 1 3.6141 -2.7383 1.3840 46 1 2.3475 -3.7279 2.1505 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565773593.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:04 Heat of formation + Delta-G solvation = -24.606533 kcal Electronic energy + Delta-G solvation = -28504.452247 eV Core-core repulsion = 24396.931494 eV Total energy + Delta-G solvation = -4107.520753 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.47760 -42.62537 -40.22701 -38.55941 -37.65668 -37.04983 -35.72633 -34.25689 -32.16655 -31.93721 -30.98953 -29.04121 -27.46011 -26.26994 -25.20917 -24.56382 -24.09211 -22.99853 -21.97556 -20.61107 -20.46784 -19.96506 -18.64774 -18.59820 -18.43669 -18.25299 -17.78448 -17.02524 -16.62828 -16.38282 -15.95463 -15.81775 -15.52630 -14.99099 -14.83145 -14.78226 -14.58678 -14.22075 -13.84656 -13.75111 -13.67640 -13.30609 -13.13282 -12.93045 -12.70982 -12.64173 -12.52791 -12.38323 -12.26515 -12.25782 -12.18158 -12.01507 -11.74153 -11.59378 -11.49841 -11.23870 -10.85189 -10.71411 -10.51260 -9.74878 -9.31164 -8.16836 -6.26492 -1.14585 -0.52575 0.11733 0.48986 1.16656 1.40579 1.41255 1.51887 2.09587 2.42013 2.82241 3.00947 3.08592 3.16679 3.33116 3.54607 3.62473 3.71911 3.96538 4.05896 4.09411 4.19056 4.27213 4.34698 4.45843 4.52500 4.53728 4.58573 4.65894 4.73096 4.76562 4.83659 4.89435 4.91001 5.06474 5.15749 5.22374 5.37438 5.41341 5.42327 5.48241 5.58233 5.81208 5.89544 6.04934 6.09383 6.29943 6.43092 6.47493 6.90545 7.42187 8.95081 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.017209 B = 0.002183 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.640541 B =12821.777772 C =13696.819268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.005 4.005 3 Si 0.960 3.040 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.259 1.259 7 C -0.526 4.526 8 H 0.064 0.936 9 C 0.032 3.968 10 C -0.075 4.075 11 C -0.109 4.109 12 C 0.069 3.931 13 N -0.544 5.544 14 C 0.050 3.950 15 C 0.081 3.919 16 N -0.474 5.474 17 C 0.256 3.744 18 C -0.159 4.159 19 N 0.053 4.947 20 O -0.184 6.184 21 O -0.177 6.177 22 C 0.015 3.985 23 C -0.218 4.218 24 C 0.508 3.492 25 O -0.548 6.548 26 C 0.053 3.947 27 C -0.097 4.097 28 H 0.261 0.739 29 H -0.017 1.017 30 H -0.015 1.015 31 H 0.053 0.947 32 H 0.060 0.940 33 H 0.051 0.949 34 H 0.043 0.957 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.057 0.943 38 H 0.136 0.864 39 H 0.108 0.892 40 H 0.221 0.779 41 H 0.182 0.818 42 H 0.186 0.814 43 H 0.098 0.902 44 H 0.048 0.952 45 H 0.061 0.939 46 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.630 -22.100 5.175 28.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.202 4.202 3 Si 0.785 3.215 4 H -0.200 1.200 5 H -0.213 1.213 6 H -0.183 1.183 7 C -0.564 4.564 8 H 0.082 0.918 9 C -0.005 4.005 10 C -0.093 4.093 11 C -0.146 4.146 12 C -0.058 4.058 13 N -0.270 5.270 14 C -0.079 4.079 15 C -0.039 4.039 16 N -0.181 5.181 17 C 0.119 3.881 18 C -0.249 4.249 19 N 0.566 4.434 20 O -0.395 6.395 21 O -0.390 6.390 22 C -0.006 4.006 23 C -0.240 4.240 24 C 0.311 3.689 25 O -0.429 6.429 26 C -0.074 4.074 27 C -0.135 4.135 28 H 0.070 0.930 29 H 0.001 0.999 30 H 0.003 0.997 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.101 0.899 36 H 0.091 0.909 37 H 0.075 0.925 38 H 0.153 0.847 39 H 0.127 0.873 40 H 0.237 0.763 41 H 0.199 0.801 42 H 0.204 0.796 43 H 0.116 0.884 44 H 0.066 0.934 45 H 0.080 0.920 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 15.762 -21.931 6.274 27.727 hybrid contribution 0.517 1.181 -0.921 1.584 sum 16.279 -20.750 5.353 26.912 Atomic orbital electron populations 1.70114 1.07886 1.27493 1.52320 1.25988 0.95673 1.03327 0.95208 0.85517 0.78844 0.78785 0.78338 1.20046 1.21268 1.18330 1.21660 0.93490 0.91940 1.49334 0.91758 1.19020 0.94100 0.93295 0.94088 1.21090 0.96924 0.93905 0.97423 1.21602 0.97890 0.94059 1.01096 1.22003 0.96016 0.98689 0.89099 1.61901 1.28041 1.01780 1.35311 1.22300 0.94838 0.94267 0.96466 1.22601 0.94025 0.85382 1.01927 1.45817 1.15210 1.19263 1.37833 1.22108 0.81810 0.97400 0.86756 1.20131 0.89193 1.02263 1.13362 1.43233 1.01836 0.99684 0.98666 1.94576 1.79012 1.27958 1.37922 1.94562 1.50641 1.25466 1.68287 1.21275 0.95321 0.96205 0.87823 1.22219 0.94670 0.99866 1.07271 1.17857 0.87835 0.83917 0.79324 1.91066 1.23656 1.80414 1.47725 1.22310 0.94800 0.88383 1.01926 1.21434 0.97968 0.97178 0.96900 0.93049 0.99863 0.99656 0.92894 0.92089 0.93000 0.93855 0.89937 0.90922 0.92465 0.84668 0.87345 0.76289 0.80116 0.79649 0.88432 0.93416 0.92027 0.93538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.12 13.29 21.45 0.28 -56.84 16 2 C 0.00 -0.28 5.46 84.66 0.46 0.18 16 3 Si 0.96 43.56 29.54 68.60 2.03 45.59 16 4 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 5 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 6 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 7 C -0.53 -28.88 8.45 25.60 0.22 -28.67 16 8 H 0.06 3.33 7.08 -2.91 -0.02 3.31 16 9 C 0.03 1.65 4.45 29.85 0.13 1.78 16 10 C -0.07 -2.86 2.20 -10.71 -0.02 -2.89 16 11 C -0.11 -3.50 5.38 30.65 0.16 -3.34 16 12 C 0.07 1.66 5.42 86.33 0.47 2.13 16 13 N -0.54 -12.02 4.81 -896.36 -4.31 -16.33 16 14 C 0.05 0.77 5.60 86.30 0.48 1.25 16 15 C 0.08 0.98 4.59 86.38 0.40 1.37 16 16 N -0.47 -5.33 2.58 -650.98 -1.68 -7.01 16 17 C 0.26 1.99 9.81 83.42 0.82 2.81 16 18 C -0.16 -1.69 6.82 36.19 0.25 -1.44 16 19 N 0.05 0.85 4.45 -46.93 -0.21 0.64 16 20 O -0.18 -3.29 18.40 18.88 0.35 -2.94 16 21 O -0.18 -3.27 18.50 18.90 0.35 -2.92 16 22 C 0.01 0.12 9.59 22.32 0.21 0.34 16 23 C -0.22 -2.26 9.99 22.40 0.22 -2.04 16 24 C 0.51 8.14 7.41 84.82 0.63 8.77 16 25 O -0.55 -13.50 16.64 -5.53 -0.09 -13.59 16 26 C 0.05 1.17 4.85 86.32 0.42 1.59 16 27 C -0.10 -3.22 5.15 30.65 0.16 -3.06 16 28 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 29 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 30 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 31 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 33 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.04 0.95 8.14 -2.39 -0.02 0.94 16 35 H 0.08 1.76 8.12 -2.39 -0.02 1.74 16 36 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.06 0.70 8.08 -2.39 -0.02 0.68 16 38 H 0.14 0.90 6.08 -2.39 -0.01 0.88 16 39 H 0.11 1.79 7.38 -2.39 -0.02 1.78 16 40 H 0.22 0.50 7.51 -2.91 -0.02 0.48 16 41 H 0.18 0.84 7.67 -2.91 -0.02 0.82 16 42 H 0.19 1.32 8.06 -2.92 -0.02 1.29 16 43 H 0.10 1.62 5.81 -2.39 -0.01 1.60 16 44 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 45 H 0.06 2.19 7.05 -2.39 -0.02 2.18 16 46 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -73.55 379.11 2.71 -70.84 By element: Atomic # 1 Polarization: 2.77 SS G_CDS: 0.99 Total: 3.76 kcal Atomic # 6 Polarization: -26.22 SS G_CDS: 5.01 Total: -21.21 kcal Atomic # 7 Polarization: -73.62 SS G_CDS: -5.91 Total: -79.53 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: 0.60 Total: -19.46 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -73.55 2.71 -70.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565773593.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.238 kcal (2) G-P(sol) polarization free energy of solvation -73.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds