Wall clock time and date at job start Tue Mar 31 2020 18:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 119.99867 * 2 1 4 4 H 1.48502 * 109.47260 * 269.99975 * 3 2 1 5 5 H 1.48493 * 109.47129 * 30.00015 * 3 2 1 6 6 H 1.48500 * 109.46939 * 150.00095 * 3 2 1 7 7 C 1.38818 * 120.00090 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99654 * 163.07572 * 7 2 1 9 9 N 1.36935 * 120.00182 * 343.06802 * 7 2 1 10 10 C 1.46927 * 120.63119 * 331.85604 * 9 7 2 11 11 C 1.53189 * 108.77202 * 233.58446 * 10 9 7 12 12 C 1.53036 * 109.31458 * 305.36184 * 11 10 9 13 13 N 1.46503 * 109.46136 * 181.38971 * 12 11 10 14 14 C 1.34772 * 119.99783 * 154.97281 * 13 12 11 15 15 O 1.21587 * 120.00187 * 359.97438 * 14 13 12 16 16 N 1.34774 * 119.99936 * 179.97438 * 14 13 12 17 17 C 1.46500 * 120.00381 * 179.97438 * 16 14 13 18 18 H 1.08998 * 109.47134 * 325.00536 * 17 16 14 19 19 C 1.52995 * 109.47491 * 204.99949 * 17 16 14 20 20 C 1.53004 * 117.50058 * 179.97438 * 19 17 16 21 21 C 1.52998 * 60.03062 * 107.48131 * 20 19 17 22 22 C 1.53004 * 109.47176 * 85.00099 * 17 16 14 23 23 F 1.39898 * 109.47226 * 180.02562 * 22 17 16 24 24 F 1.39904 * 109.46955 * 299.99995 * 22 17 16 25 25 F 1.39897 * 109.47285 * 59.99954 * 22 17 16 26 26 C 1.53041 * 109.52716 * 61.36941 * 12 11 10 27 27 C 1.46925 * 120.62952 * 151.82506 * 9 7 2 28 28 H 0.96994 * 120.00322 * 0.02562 * 1 2 3 29 29 H 1.08990 * 109.58942 * 113.79129 * 10 9 7 30 30 H 1.09005 * 109.70270 * 353.43906 * 10 9 7 31 31 H 1.09004 * 109.49631 * 185.40676 * 11 10 9 32 32 H 1.09004 * 109.52709 * 65.33297 * 11 10 9 33 33 H 1.09005 * 109.45815 * 301.36372 * 12 11 10 34 34 H 0.96998 * 119.99914 * 334.96918 * 13 12 11 35 35 H 0.97001 * 120.00232 * 359.97438 * 16 14 13 36 36 H 1.09007 * 115.55902 * 34.31142 * 19 17 16 37 37 H 1.09003 * 117.49706 * 214.98384 * 20 19 17 38 38 H 1.08994 * 117.49589 * 359.97438 * 20 19 17 39 39 H 1.08998 * 117.49771 * 107.50310 * 21 20 19 40 40 H 1.09002 * 117.49896 * 252.52632 * 21 20 19 41 41 H 1.09005 * 109.49355 * 58.58469 * 26 12 11 42 42 H 1.09002 * 109.50009 * 178.67624 * 26 12 11 43 43 H 1.08998 * 109.58789 * 246.20431 * 27 9 7 44 44 H 1.08999 * 109.58927 * 6.48903 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0552 -1.2222 -0.2728 9 7 1.3701 -2.3626 0.3443 10 6 0.2261 -2.3410 1.2660 11 6 0.4975 -3.3209 2.4117 12 6 0.8121 -4.7021 1.8326 13 7 1.0397 -5.6497 2.9265 14 6 0.8358 -6.9673 2.7300 15 8 0.4626 -7.3696 1.6450 16 7 1.0456 -7.8392 3.7361 17 6 0.8235 -9.2714 3.5227 18 1 -0.0175 -9.4114 2.8436 19 6 0.5156 -9.9449 4.8615 20 6 0.2511 -11.4518 4.8500 21 6 1.5618 -10.9103 5.4242 22 6 2.0800 -9.8973 2.9141 23 9 1.8677 -11.2649 2.7098 24 9 2.3616 -9.2816 1.6898 25 9 3.1595 -9.7176 3.7856 26 6 2.0676 -4.6177 0.9615 27 6 1.8139 -3.6528 -0.2008 28 1 -0.4850 0.8400 -0.0004 29 1 -0.6769 -2.6411 0.7346 30 1 0.0967 -1.3359 1.6676 31 1 -0.3831 -3.3863 3.0508 32 1 1.3470 -2.9700 2.9977 33 1 -0.0280 -5.0418 1.2268 34 1 1.3371 -5.3288 3.7922 35 1 1.3438 -7.5184 4.6016 36 1 -0.0470 -9.3408 5.5734 37 1 -0.4851 -11.8390 5.5545 38 1 0.2961 -11.9633 3.8886 39 1 1.6879 -10.9412 6.5064 40 1 2.4691 -11.0651 4.8402 41 1 2.9024 -4.2543 1.5609 42 1 2.3047 -5.6063 0.5683 43 1 1.0403 -4.0599 -0.8518 44 1 2.7333 -3.5125 -0.7693 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588341451.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:40 Heat of formation + Delta-G solvation = -125.266364 kcal Electronic energy + Delta-G solvation = -30324.748930 eV Core-core repulsion = 25671.006498 eV Total energy + Delta-G solvation = -4653.742432 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.41740 -47.85328 -47.72240 -40.24562 -38.32932 -37.33450 -34.62025 -34.37563 -32.13849 -30.26664 -29.66955 -28.55743 -25.12100 -24.44394 -22.95899 -22.32661 -22.03260 -21.33383 -20.71036 -19.49633 -19.02006 -18.75961 -18.19776 -17.74422 -16.71851 -16.30649 -15.68357 -15.07442 -14.91455 -14.79803 -14.72689 -14.55617 -14.43547 -14.22261 -14.12798 -13.85182 -13.75338 -13.54113 -13.38560 -13.05159 -12.82837 -12.63389 -12.33866 -11.82870 -11.69672 -11.45422 -11.12421 -11.01074 -10.87806 -10.76044 -10.70598 -10.50656 -10.29607 -10.15451 -10.03831 -9.77092 -9.59553 -9.53443 -8.70466 -8.45494 -6.68039 -5.79756 -3.21555 2.22671 2.51767 3.17937 3.23779 3.37228 3.44276 3.46569 3.57867 3.67960 3.93731 4.09339 4.30748 4.40117 4.47883 4.49641 4.83485 5.00066 5.23644 5.33277 5.38006 5.40440 5.49960 5.58021 5.60429 5.66079 5.87139 5.98097 6.08108 6.27339 6.32532 6.44479 6.56908 6.59756 6.75944 6.82928 6.95248 7.04087 7.31323 7.61115 7.79432 7.95463 8.44674 8.56349 9.20883 9.84115 10.41237 11.29341 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.031612 B = 0.002417 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.534811 B =11583.150663 C =11855.204013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.002 3.998 3 Si 0.902 3.098 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.252 4.252 8 H 0.066 0.934 9 N -0.593 5.593 10 C 0.175 3.825 11 C -0.146 4.146 12 C 0.168 3.832 13 N -0.733 5.733 14 C 0.701 3.299 15 O -0.575 6.575 16 N -0.740 5.740 17 C 0.163 3.837 18 H 0.134 0.866 19 C -0.175 4.175 20 C -0.168 4.168 21 C -0.192 4.192 22 C 0.432 3.568 23 F -0.181 7.181 24 F -0.165 7.165 25 F -0.179 7.179 26 C -0.140 4.140 27 C 0.148 3.852 28 H 0.254 0.746 29 H 0.021 0.979 30 H 0.092 0.908 31 H 0.054 0.946 32 H 0.059 0.941 33 H 0.083 0.917 34 H 0.393 0.607 35 H 0.405 0.595 36 H 0.130 0.870 37 H 0.103 0.897 38 H 0.109 0.891 39 H 0.102 0.898 40 H 0.113 0.887 41 H 0.057 0.943 42 H 0.055 0.945 43 H 0.021 0.979 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.113 -21.641 14.156 25.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.197 4.197 3 Si 0.732 3.268 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.381 4.381 8 H 0.083 0.917 9 N -0.316 5.316 10 C 0.048 3.952 11 C -0.186 4.186 12 C 0.065 3.935 13 N -0.385 5.385 14 C 0.401 3.599 15 O -0.451 6.451 16 N -0.397 5.397 17 C 0.054 3.946 18 H 0.151 0.849 19 C -0.193 4.193 20 C -0.205 4.205 21 C -0.229 4.229 22 C 0.376 3.624 23 F -0.163 7.163 24 F -0.147 7.147 25 F -0.160 7.160 26 C -0.181 4.181 27 C 0.021 3.979 28 H 0.064 0.936 29 H 0.039 0.961 30 H 0.110 0.890 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.101 0.899 34 H 0.226 0.774 35 H 0.240 0.760 36 H 0.148 0.852 37 H 0.121 0.879 38 H 0.127 0.873 39 H 0.121 0.879 40 H 0.130 0.870 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.039 0.961 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.675 -21.801 13.075 25.431 hybrid contribution 0.964 1.041 0.798 1.628 sum 1.638 -20.760 13.873 25.023 Atomic orbital electron populations 1.70018 1.05253 1.25529 1.54015 1.25051 0.95286 0.98418 1.00924 0.86307 0.79133 0.83648 0.77752 1.21380 1.21578 1.20521 1.19182 0.92584 0.84747 1.41607 0.91676 1.44097 1.35806 1.01695 1.49956 1.20733 0.88934 0.97845 0.87653 1.22554 1.00514 0.94648 1.00888 1.20979 0.98516 0.87413 0.86608 1.45538 1.72110 1.04527 1.16364 1.16027 0.78560 0.81524 0.83786 1.90971 1.52612 1.77771 1.23711 1.44969 1.74846 1.04357 1.15496 1.21288 0.93928 0.81301 0.98130 0.84885 1.22408 1.06393 0.93770 0.96758 1.23244 0.99705 0.93385 1.04180 1.23704 0.94603 1.02144 1.02434 1.21356 0.87074 0.76539 0.77412 1.93129 1.94736 1.33290 1.95135 1.93291 1.94413 1.82296 1.44663 1.93084 1.59126 1.94735 1.69060 1.22400 0.97159 0.99642 0.98859 1.20875 0.97936 0.86462 0.92649 0.93604 0.96071 0.89017 0.92735 0.92180 0.89885 0.77417 0.76019 0.85170 0.87860 0.87299 0.87909 0.86953 0.92412 0.92585 0.96127 0.92558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.97 11.19 55.49 0.62 -25.35 16 2 C 0.00 0.04 4.92 -17.43 -0.09 -0.04 16 3 Si 0.90 21.48 29.59 -169.99 -5.03 16.45 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.25 -6.87 9.58 -15.06 -0.14 -7.01 16 8 H 0.07 1.75 7.89 -52.48 -0.41 1.34 16 9 N -0.59 -14.78 2.99 -172.32 -0.52 -15.29 16 10 C 0.18 4.06 5.30 -3.71 -0.02 4.04 16 11 C -0.15 -2.61 5.55 -26.61 -0.15 -2.75 16 12 C 0.17 2.89 2.42 -67.89 -0.16 2.73 16 13 N -0.73 -9.90 5.08 -58.63 -0.30 -10.20 16 14 C 0.70 9.91 8.06 -86.92 -0.70 9.21 16 15 O -0.57 -10.48 14.58 5.29 0.08 -10.40 16 16 N -0.74 -7.29 5.00 -58.68 -0.29 -7.59 16 17 C 0.16 1.53 2.51 -67.93 -0.17 1.36 16 18 H 0.13 1.38 7.58 -51.93 -0.39 0.99 16 19 C -0.17 -1.13 5.85 -90.58 -0.53 -1.66 16 20 C -0.17 -1.00 9.72 -26.73 -0.26 -1.26 16 21 C -0.19 -1.21 9.04 -26.69 -0.24 -1.45 16 22 C 0.43 4.77 2.49 37.16 0.09 4.86 16 23 F -0.18 -1.85 13.63 2.25 0.03 -1.82 16 24 F -0.17 -2.43 15.67 2.25 0.04 -2.39 16 25 F -0.18 -1.89 14.36 2.25 0.03 -1.85 16 26 C -0.14 -2.60 5.65 -26.61 -0.15 -2.75 16 27 C 0.15 3.21 6.52 -3.71 -0.02 3.18 16 28 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.09 2.36 6.07 -51.93 -0.31 2.05 16 31 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 33 H 0.08 1.61 7.58 -51.93 -0.39 1.22 16 34 H 0.39 4.12 8.62 -40.82 -0.35 3.77 16 35 H 0.40 2.80 8.62 -40.82 -0.35 2.45 16 36 H 0.13 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.11 0.72 6.36 -51.93 -0.33 0.38 16 39 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.11 0.87 4.51 -51.93 -0.23 0.63 16 41 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.06 1.20 7.93 -51.93 -0.41 0.79 16 LS Contribution 357.75 15.07 5.39 5.39 Total: -1.00 -31.91 357.75 -8.63 -40.54 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -6.14 Total: 4.06 kcal Atomic # 6 Polarization: 11.01 SS G_CDS: -2.55 Total: 8.46 kcal Atomic # 7 Polarization: -57.94 SS G_CDS: -0.49 Total: -58.43 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.08 Total: -10.40 kcal Atomic # 9 Polarization: -6.16 SS G_CDS: 0.10 Total: -6.06 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.03 Total: 16.45 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.91 -8.63 -40.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588341451.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.728 kcal (2) G-P(sol) polarization free energy of solvation -31.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds