Wall clock time and date at job start Tue Mar 31 2020 18:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 119.99867 * 2 1 4 4 H 1.48502 * 109.47260 * 269.99975 * 3 2 1 5 5 H 1.48493 * 109.47129 * 30.00015 * 3 2 1 6 6 H 1.48500 * 109.46939 * 150.00095 * 3 2 1 7 7 C 1.38818 * 120.00090 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99654 * 163.07572 * 7 2 1 9 9 N 1.36935 * 120.00182 * 343.06802 * 7 2 1 10 10 C 1.46927 * 120.63119 * 331.85604 * 9 7 2 11 11 C 1.53189 * 108.77202 * 233.58446 * 10 9 7 12 12 C 1.53036 * 109.31458 * 305.36184 * 11 10 9 13 13 N 1.46503 * 109.46136 * 181.38971 * 12 11 10 14 14 C 1.34772 * 119.99783 * 154.97281 * 13 12 11 15 15 O 1.21587 * 120.00187 * 359.97438 * 14 13 12 16 16 N 1.34774 * 119.99936 * 179.97438 * 14 13 12 17 17 C 1.46500 * 120.00381 * 179.97438 * 16 14 13 18 18 H 1.08998 * 109.47134 * 325.00536 * 17 16 14 19 19 C 1.52995 * 109.47491 * 204.99949 * 17 16 14 20 20 C 1.53004 * 117.50058 * 179.97438 * 19 17 16 21 21 C 1.52998 * 60.03062 * 107.48131 * 20 19 17 22 22 C 1.53004 * 109.47176 * 85.00099 * 17 16 14 23 23 F 1.39898 * 109.47226 * 180.02562 * 22 17 16 24 24 F 1.39904 * 109.46955 * 299.99995 * 22 17 16 25 25 F 1.39897 * 109.47285 * 59.99954 * 22 17 16 26 26 C 1.53041 * 109.52716 * 61.36941 * 12 11 10 27 27 C 1.46925 * 120.62952 * 151.82506 * 9 7 2 28 28 H 0.96994 * 120.00322 * 0.02562 * 1 2 3 29 29 H 1.08990 * 109.58942 * 113.79129 * 10 9 7 30 30 H 1.09005 * 109.70270 * 353.43906 * 10 9 7 31 31 H 1.09004 * 109.49631 * 185.40676 * 11 10 9 32 32 H 1.09004 * 109.52709 * 65.33297 * 11 10 9 33 33 H 1.09005 * 109.45815 * 301.36372 * 12 11 10 34 34 H 0.96998 * 119.99914 * 334.96918 * 13 12 11 35 35 H 0.97001 * 120.00232 * 359.97438 * 16 14 13 36 36 H 1.09007 * 115.55902 * 34.31142 * 19 17 16 37 37 H 1.09003 * 117.49706 * 214.98384 * 20 19 17 38 38 H 1.08994 * 117.49589 * 359.97438 * 20 19 17 39 39 H 1.08998 * 117.49771 * 107.50310 * 21 20 19 40 40 H 1.09002 * 117.49896 * 252.52632 * 21 20 19 41 41 H 1.09005 * 109.49355 * 58.58469 * 26 12 11 42 42 H 1.09002 * 109.50009 * 178.67624 * 26 12 11 43 43 H 1.08998 * 109.58789 * 246.20431 * 27 9 7 44 44 H 1.08999 * 109.58927 * 6.48903 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0552 -1.2222 -0.2728 9 7 1.3701 -2.3626 0.3443 10 6 0.2261 -2.3410 1.2660 11 6 0.4975 -3.3209 2.4117 12 6 0.8121 -4.7021 1.8326 13 7 1.0397 -5.6497 2.9265 14 6 0.8358 -6.9673 2.7300 15 8 0.4626 -7.3696 1.6450 16 7 1.0456 -7.8392 3.7361 17 6 0.8235 -9.2714 3.5227 18 1 -0.0175 -9.4114 2.8436 19 6 0.5156 -9.9449 4.8615 20 6 0.2511 -11.4518 4.8500 21 6 1.5618 -10.9103 5.4242 22 6 2.0800 -9.8973 2.9141 23 9 1.8677 -11.2649 2.7098 24 9 2.3616 -9.2816 1.6898 25 9 3.1595 -9.7176 3.7856 26 6 2.0676 -4.6177 0.9615 27 6 1.8139 -3.6528 -0.2008 28 1 -0.4850 0.8400 -0.0004 29 1 -0.6769 -2.6411 0.7346 30 1 0.0967 -1.3359 1.6676 31 1 -0.3831 -3.3863 3.0508 32 1 1.3470 -2.9700 2.9977 33 1 -0.0280 -5.0418 1.2268 34 1 1.3371 -5.3288 3.7922 35 1 1.3438 -7.5184 4.6016 36 1 -0.0470 -9.3408 5.5734 37 1 -0.4851 -11.8390 5.5545 38 1 0.2961 -11.9633 3.8886 39 1 1.6879 -10.9412 6.5064 40 1 2.4691 -11.0651 4.8402 41 1 2.9024 -4.2543 1.5609 42 1 2.3047 -5.6063 0.5683 43 1 1.0403 -4.0599 -0.8518 44 1 2.7333 -3.5125 -0.7693 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588341451.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:39 Heat of formation + Delta-G solvation = -146.097375 kcal Electronic energy + Delta-G solvation = -30325.652230 eV Core-core repulsion = 25671.006498 eV Total energy + Delta-G solvation = -4654.645732 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.156 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -51.30332 -48.70694 -48.69916 -41.36929 -39.38849 -38.52981 -36.04509 -35.44962 -33.89242 -31.85803 -31.29800 -29.66655 -26.87028 -25.39510 -23.97799 -23.67332 -23.38488 -22.07727 -21.83931 -21.07103 -19.93098 -19.70100 -19.29296 -18.85547 -18.38015 -17.34170 -16.85185 -16.44448 -16.13868 -15.89245 -15.65874 -15.53761 -15.40919 -15.37934 -15.29684 -15.11618 -15.02877 -14.80686 -14.77131 -14.33333 -14.19867 -14.06590 -13.60775 -13.21106 -13.00234 -12.60693 -12.51457 -12.48046 -12.23641 -12.17870 -12.01756 -11.86899 -11.63661 -11.54792 -11.37949 -11.28182 -11.17758 -10.58853 -10.53817 -9.92085 -8.70050 -7.87519 -5.32890 1.29205 1.48877 1.49914 1.59982 1.61324 2.11572 2.52559 2.61284 2.85164 2.88467 2.99973 3.24735 3.30202 3.56736 3.67185 3.84969 3.90731 3.97692 4.06327 4.25635 4.32181 4.35017 4.47178 4.65429 4.80685 4.81707 4.86223 4.95380 5.00809 5.06032 5.08029 5.16577 5.17447 5.22427 5.30120 5.47946 5.55511 5.65334 5.70811 5.89620 6.39709 6.98521 7.15295 7.47997 7.84586 8.37503 9.19722 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.031612 B = 0.002417 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.534811 B =11583.150663 C =11855.204013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.049 4.049 3 Si 0.968 3.032 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.269 1.269 7 C -0.264 4.264 8 H 0.066 0.934 9 N -0.609 5.609 10 C 0.179 3.821 11 C -0.127 4.127 12 C 0.182 3.818 13 N -0.720 5.720 14 C 0.701 3.299 15 O -0.617 6.617 16 N -0.721 5.721 17 C 0.165 3.835 18 H 0.122 0.878 19 C -0.170 4.170 20 C -0.166 4.166 21 C -0.192 4.192 22 C 0.429 3.571 23 F -0.178 7.178 24 F -0.191 7.191 25 F -0.175 7.175 26 C -0.125 4.125 27 C 0.145 3.855 28 H 0.251 0.749 29 H -0.005 1.005 30 H 0.064 0.936 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.059 0.941 34 H 0.412 0.588 35 H 0.423 0.577 36 H 0.153 0.847 37 H 0.123 0.877 38 H 0.098 0.902 39 H 0.121 0.879 40 H 0.096 0.904 41 H 0.065 0.935 42 H 0.055 0.945 43 H 0.007 0.993 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.808 -22.443 16.757 28.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.244 4.244 3 Si 0.796 3.204 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.194 1.194 7 C -0.394 4.394 8 H 0.084 0.916 9 N -0.333 5.333 10 C 0.052 3.948 11 C -0.166 4.166 12 C 0.076 3.924 13 N -0.374 5.374 14 C 0.401 3.599 15 O -0.496 6.496 16 N -0.378 5.378 17 C 0.056 3.944 18 H 0.140 0.860 19 C -0.188 4.188 20 C -0.203 4.203 21 C -0.229 4.229 22 C 0.372 3.628 23 F -0.159 7.159 24 F -0.172 7.172 25 F -0.156 7.156 26 C -0.165 4.165 27 C 0.019 3.981 28 H 0.060 0.940 29 H 0.013 0.987 30 H 0.082 0.918 31 H 0.098 0.902 32 H 0.089 0.911 33 H 0.078 0.922 34 H 0.249 0.751 35 H 0.261 0.739 36 H 0.170 0.830 37 H 0.141 0.859 38 H 0.117 0.883 39 H 0.139 0.861 40 H 0.115 0.885 41 H 0.084 0.916 42 H 0.074 0.926 43 H 0.025 0.975 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.403 -22.642 15.750 27.616 hybrid contribution 0.756 1.182 -0.064 1.405 sum 2.159 -21.459 15.686 26.668 Atomic orbital electron populations 1.70174 1.06661 1.25986 1.55282 1.25808 0.96046 1.01486 1.01088 0.85270 0.78136 0.79479 0.77487 1.21432 1.21656 1.19419 1.19503 0.92849 0.85863 1.41221 0.91632 1.44354 1.36003 1.02114 1.50782 1.20571 0.87651 0.97797 0.88749 1.22256 1.02113 0.93362 0.98911 1.20527 0.96926 0.87737 0.87172 1.45091 1.72107 1.03982 1.16267 1.16134 0.78134 0.81802 0.83875 1.90955 1.54400 1.78484 1.25805 1.44715 1.73709 1.04116 1.15241 1.21383 0.92550 0.80840 0.99650 0.86007 1.22416 1.06965 0.94133 0.95320 1.23325 1.00026 0.92780 1.04177 1.23713 0.93992 1.01899 1.03274 1.21647 0.87753 0.76732 0.76618 1.93137 1.94726 1.32945 1.95100 1.93243 1.94671 1.82834 1.46461 1.93093 1.59117 1.94759 1.68679 1.22189 0.98047 0.98421 0.97850 1.20946 0.97286 0.86008 0.93862 0.93970 0.98696 0.91770 0.90165 0.91056 0.92234 0.75132 0.73889 0.82956 0.85909 0.88329 0.86098 0.88541 0.91614 0.92619 0.97504 0.92622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.91 11.19 21.65 0.24 -54.67 16 2 C -0.05 -2.71 4.92 84.86 0.42 -2.29 16 3 Si 0.97 44.39 29.59 68.60 2.03 46.42 16 4 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 5 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 6 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 7 C -0.26 -14.54 9.58 84.04 0.81 -13.73 16 8 H 0.07 3.53 7.89 -2.91 -0.02 3.50 16 9 N -0.61 -30.78 2.99 -699.11 -2.09 -32.87 16 10 C 0.18 8.42 5.30 86.36 0.46 8.88 16 11 C -0.13 -4.35 5.55 30.67 0.17 -4.18 16 12 C 0.18 6.05 2.42 45.02 0.11 6.15 16 13 N -0.72 -17.85 5.08 -457.69 -2.33 -20.17 16 14 C 0.70 18.71 8.06 179.06 1.44 20.15 16 15 O -0.62 -22.34 14.58 -3.99 -0.06 -22.40 16 16 N -0.72 -12.56 5.00 -457.82 -2.29 -14.85 16 17 C 0.17 2.83 2.51 44.99 0.11 2.94 16 18 H 0.12 2.44 7.58 -2.39 -0.02 2.42 16 19 C -0.17 -1.71 5.85 -10.77 -0.06 -1.77 16 20 C -0.17 -1.56 9.72 30.60 0.30 -1.26 16 21 C -0.19 -1.91 9.04 30.62 0.28 -1.63 16 22 C 0.43 9.07 2.49 71.98 0.18 9.25 16 23 F -0.18 -3.51 13.63 44.97 0.61 -2.89 16 24 F -0.19 -5.59 15.67 44.97 0.70 -4.89 16 25 F -0.18 -3.44 14.36 44.97 0.65 -2.79 16 26 C -0.12 -4.53 5.65 30.67 0.17 -4.36 16 27 C 0.15 6.39 6.52 86.36 0.56 6.95 16 28 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 29 H -0.01 -0.26 8.14 -2.39 -0.02 -0.28 16 30 H 0.06 3.38 6.07 -2.38 -0.01 3.37 16 31 H 0.08 2.36 8.14 -2.38 -0.02 2.34 16 32 H 0.07 2.33 8.14 -2.38 -0.02 2.31 16 33 H 0.06 2.31 7.58 -2.38 -0.02 2.30 16 34 H 0.41 7.20 8.62 -92.71 -0.80 6.40 16 35 H 0.42 4.41 8.62 -92.71 -0.80 3.61 16 36 H 0.15 0.92 8.14 -2.38 -0.02 0.90 16 37 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.10 1.15 6.36 -2.39 -0.02 1.13 16 39 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.10 1.31 4.51 -2.39 -0.01 1.30 16 41 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 42 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 43 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 44 H 0.06 2.40 7.93 -2.39 -0.02 2.38 16 Total: -1.00 -70.73 357.75 1.87 -68.85 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -0.54 Total: 15.18 kcal Atomic # 6 Polarization: 20.15 SS G_CDS: 4.94 Total: 25.10 kcal Atomic # 7 Polarization: -116.10 SS G_CDS: -6.46 Total: -122.57 kcal Atomic # 8 Polarization: -22.34 SS G_CDS: -0.06 Total: -22.40 kcal Atomic # 9 Polarization: -12.54 SS G_CDS: 1.96 Total: -10.58 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -70.73 1.87 -68.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588341451.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.244 kcal (2) G-P(sol) polarization free energy of solvation -70.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds