Wall clock time and date at job start Tue Mar 31 2020 18:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86806 * 120.00043 * 2 1 4 4 H 1.48494 * 109.47083 * 239.99951 * 3 2 1 5 5 H 1.48500 * 109.46851 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47024 * 120.00002 * 3 2 1 7 7 C 1.38813 * 120.00004 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99974 * 163.08661 * 7 2 1 9 9 N 1.36936 * 120.00005 * 343.09585 * 7 2 1 10 10 C 1.46928 * 120.63013 * 151.82709 * 9 7 2 11 11 C 1.53196 * 108.89135 * 126.29699 * 10 9 7 12 12 C 1.53349 * 109.15353 * 54.57497 * 11 10 9 13 13 N 1.46493 * 109.42022 * 178.67345 * 12 11 10 14 14 C 1.34774 * 120.00256 * 275.12556 * 13 12 11 15 15 O 1.21586 * 119.99992 * 0.02562 * 14 13 12 16 16 N 1.34774 * 120.00303 * 180.02562 * 14 13 12 17 17 C 1.46496 * 120.00211 * 180.02562 * 16 14 13 18 18 H 1.08997 * 109.47385 * 35.00125 * 17 16 14 19 19 C 1.53002 * 109.47131 * 154.99967 * 17 16 14 20 20 C 1.52998 * 117.49841 * 248.61922 * 19 17 16 21 21 C 1.52997 * 60.00321 * 252.51009 * 20 19 17 22 22 C 1.53001 * 109.47144 * 274.99780 * 17 16 14 23 23 F 1.39904 * 109.46739 * 59.99873 * 22 17 16 24 24 F 1.39895 * 109.47539 * 179.97438 * 22 17 16 25 25 F 1.39896 * 109.47093 * 300.00361 * 22 17 16 26 26 C 1.53044 * 109.60552 * 298.71437 * 12 11 10 27 27 C 1.46924 * 120.63127 * 331.80020 * 9 7 2 28 28 H 0.96996 * 119.99787 * 359.97438 * 1 2 3 29 29 H 1.08996 * 109.58355 * 246.14871 * 10 9 7 30 30 H 1.08994 * 109.59076 * 6.43731 * 10 9 7 31 31 H 1.08998 * 109.49426 * 174.65878 * 11 10 9 32 32 H 1.09000 * 109.49457 * 294.75312 * 11 10 9 33 33 H 1.09003 * 109.42058 * 58.74791 * 12 11 10 34 34 H 0.97003 * 120.00082 * 95.12907 * 13 12 11 35 35 H 0.97001 * 119.99830 * 359.97438 * 16 14 13 36 36 H 1.08998 * 115.55275 * 34.32890 * 19 17 16 37 37 H 1.08997 * 117.49875 * 0.02562 * 20 19 17 38 38 H 1.08999 * 117.50364 * 145.02320 * 20 19 17 39 39 H 1.08999 * 117.50693 * 252.50952 * 21 20 19 40 40 H 1.09000 * 117.49944 * 107.48311 * 21 20 19 41 41 H 1.08992 * 109.49619 * 301.41603 * 26 12 11 42 42 H 1.08999 * 109.52313 * 181.33616 * 26 12 11 43 43 H 1.09000 * 109.58664 * 353.42162 * 27 9 7 44 44 H 1.08996 * 109.58580 * 113.70091 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2124 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0552 -1.2225 -0.2716 9 7 1.3699 -2.3623 0.3459 10 6 1.8139 -3.6529 -0.1982 11 6 2.0707 -4.6187 0.9629 12 6 0.8131 -4.7007 1.8366 13 7 1.0413 -5.6472 2.9312 14 6 0.8382 -6.9651 2.7359 15 8 0.4660 -7.3686 1.6510 16 7 1.0477 -7.8359 3.7430 17 6 0.8274 -9.2685 3.5305 18 1 1.1099 -9.5323 2.5114 19 6 1.6793 -10.0676 4.5188 20 6 2.8446 -10.8803 3.9509 21 6 1.5891 -11.5937 4.4564 22 6 -0.6509 -9.5954 3.7510 23 9 -1.4298 -8.8647 2.8473 24 9 -0.8614 -10.9634 3.5475 25 9 -1.0133 -9.2568 5.0590 26 6 0.4984 -3.3190 2.4146 27 6 0.2263 -2.3402 1.2680 28 1 -0.4849 0.8400 0.0004 29 1 1.0402 -4.0608 -0.8485 30 1 2.7330 -3.5129 -0.7671 31 1 2.3088 -5.6065 0.5685 32 1 2.9057 -4.2544 1.5613 33 1 -0.0271 -5.0411 1.2314 34 1 1.3386 -5.3254 3.7967 35 1 1.3450 -7.5140 4.6084 36 1 1.8144 -9.6111 5.4993 37 1 3.0046 -10.8453 2.8733 38 1 3.7467 -10.9586 4.5577 39 1 1.6650 -12.1413 5.3958 40 1 0.9228 -12.0283 3.7113 41 1 1.3481 -2.9671 2.9994 42 1 -0.3818 -3.3836 3.0543 43 1 0.0992 -1.3345 1.6685 44 1 -0.6773 -2.6386 0.7365 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588341452.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:43 Heat of formation + Delta-G solvation = -135.520334 kcal Electronic energy + Delta-G solvation = -30125.975172 eV Core-core repulsion = 25471.788095 eV Total energy + Delta-G solvation = -4654.187077 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.156 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.19780 -47.76060 -47.59667 -40.24942 -38.35748 -37.32770 -34.63582 -34.37738 -32.14149 -30.28165 -29.69364 -28.60975 -25.07509 -24.25185 -22.89379 -22.33759 -22.02589 -21.53000 -20.67674 -19.49744 -18.68773 -18.55930 -18.15373 -17.79166 -16.99440 -16.59727 -15.48349 -15.10812 -14.85609 -14.79752 -14.58219 -14.38165 -14.21355 -14.10265 -14.04823 -13.77539 -13.72531 -13.62509 -13.54011 -13.01789 -12.91290 -12.54179 -12.34527 -12.05212 -11.85251 -11.46419 -11.12009 -11.02468 -10.88414 -10.79346 -10.71842 -10.51643 -10.29422 -10.15138 -10.03988 -9.76802 -9.61218 -9.51598 -8.70090 -8.45214 -6.68517 -5.79600 -3.21915 2.29235 2.46506 3.20253 3.24318 3.38125 3.43946 3.44879 3.61100 3.75413 3.97497 4.18343 4.35671 4.42909 4.48730 4.49353 4.61424 4.97512 5.21102 5.33048 5.39244 5.40555 5.50107 5.55563 5.59049 5.64931 5.87219 5.99136 6.07239 6.27021 6.32713 6.44332 6.55592 6.59488 6.74988 6.81446 6.95272 7.03199 7.31842 7.61821 7.78803 7.95921 8.44649 8.57086 9.20690 9.83900 10.41060 11.29372 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.028227 B = 0.002420 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.735175 B =11568.221375 C =11945.785632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.002 3.998 3 Si 0.903 3.097 4 H -0.282 1.282 5 H -0.291 1.291 6 H -0.284 1.284 7 C -0.253 4.253 8 H 0.065 0.935 9 N -0.593 5.593 10 C 0.147 3.853 11 C -0.139 4.139 12 C 0.168 3.832 13 N -0.732 5.732 14 C 0.702 3.298 15 O -0.575 6.575 16 N -0.739 5.739 17 C 0.163 3.837 18 H 0.130 0.870 19 C -0.180 4.180 20 C -0.159 4.159 21 C -0.169 4.169 22 C 0.435 3.565 23 F -0.168 7.168 24 F -0.182 7.182 25 F -0.184 7.184 26 C -0.146 4.146 27 C 0.175 3.825 28 H 0.255 0.745 29 H 0.021 0.979 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.083 0.917 34 H 0.393 0.607 35 H 0.404 0.596 36 H 0.122 0.878 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.104 0.896 40 H 0.110 0.890 41 H 0.059 0.941 42 H 0.054 0.946 43 H 0.092 0.908 44 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.320 -21.946 13.227 25.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.196 4.196 3 Si 0.733 3.267 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.383 4.383 8 H 0.083 0.917 9 N -0.315 5.315 10 C 0.020 3.980 11 C -0.179 4.179 12 C 0.064 3.936 13 N -0.385 5.385 14 C 0.402 3.598 15 O -0.451 6.451 16 N -0.396 5.396 17 C 0.054 3.946 18 H 0.148 0.852 19 C -0.199 4.199 20 C -0.196 4.196 21 C -0.206 4.206 22 C 0.379 3.621 23 F -0.150 7.150 24 F -0.163 7.163 25 F -0.166 7.166 26 C -0.186 4.186 27 C 0.048 3.952 28 H 0.065 0.935 29 H 0.039 0.961 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.101 0.899 34 H 0.226 0.774 35 H 0.239 0.761 36 H 0.140 0.860 37 H 0.120 0.880 38 H 0.121 0.879 39 H 0.122 0.878 40 H 0.128 0.872 41 H 0.078 0.922 42 H 0.073 0.927 43 H 0.110 0.890 44 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 2.818 -22.100 12.153 25.378 hybrid contribution 0.376 1.135 1.001 1.560 sum 3.195 -20.964 13.155 24.955 Atomic orbital electron populations 1.70014 1.05249 1.25667 1.53823 1.25058 0.95289 0.98430 1.00862 0.86362 0.78899 0.83344 0.78115 1.20872 1.21640 1.21074 1.19146 0.92555 0.84781 1.41796 0.91695 1.44084 1.35819 1.01658 1.49971 1.20872 0.97908 0.86517 0.92668 1.22449 0.97123 0.99537 0.98830 1.21045 0.98493 0.87459 0.86577 1.45531 1.72142 1.04505 1.16357 1.16012 0.78458 0.81546 0.83832 1.90968 1.52470 1.77690 1.23984 1.44963 1.74707 1.04546 1.15389 1.21292 0.87695 0.82396 1.03258 0.85239 1.22339 1.03054 0.94265 1.00251 1.23082 0.92603 1.01952 1.01995 1.23248 1.01043 0.91951 1.04381 1.21338 0.92317 0.74280 0.74157 1.93284 1.77402 1.77077 1.67193 1.93123 1.95867 1.32551 1.94802 1.93155 1.93471 1.92094 1.37852 1.22545 1.00548 0.94617 1.00893 1.20743 0.88957 0.97873 0.87639 0.93526 0.96130 0.92598 0.92650 0.92424 0.89883 0.77430 0.76096 0.85972 0.87971 0.87872 0.87769 0.87162 0.92181 0.92697 0.89028 0.96010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.02 11.20 55.49 0.62 -25.40 16 2 C 0.00 0.06 4.92 -17.43 -0.09 -0.02 16 3 Si 0.90 21.46 29.59 -169.99 -5.03 16.43 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 7 C -0.25 -6.89 9.58 -15.06 -0.14 -7.03 16 8 H 0.07 1.73 7.89 -52.49 -0.41 1.32 16 9 N -0.59 -14.73 2.99 -172.32 -0.52 -15.25 16 10 C 0.15 3.16 6.51 -3.71 -0.02 3.14 16 11 C -0.14 -2.51 5.68 -26.45 -0.15 -2.66 16 12 C 0.17 2.89 2.42 -67.73 -0.16 2.73 16 13 N -0.73 -9.97 5.08 -58.48 -0.30 -10.27 16 14 C 0.70 10.00 8.06 -86.92 -0.70 9.30 16 15 O -0.57 -10.54 14.58 5.29 0.08 -10.46 16 16 N -0.74 -7.39 5.00 -58.68 -0.29 -7.68 16 17 C 0.16 1.55 2.35 -67.93 -0.16 1.39 16 18 H 0.13 1.36 7.33 -51.93 -0.38 0.98 16 19 C -0.18 -1.16 5.09 -90.62 -0.46 -1.63 16 20 C -0.16 -0.88 10.18 -26.73 -0.27 -1.15 16 21 C -0.17 -0.97 9.34 -26.73 -0.25 -1.22 16 22 C 0.44 4.91 2.82 37.16 0.10 5.02 16 23 F -0.17 -2.50 15.67 2.25 0.04 -2.47 16 24 F -0.18 -1.90 14.50 2.25 0.03 -1.87 16 25 F -0.18 -2.03 16.95 2.25 0.04 -2.00 16 26 C -0.15 -2.64 5.55 -26.61 -0.15 -2.79 16 27 C 0.17 4.07 5.30 -3.71 -0.02 4.05 16 28 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 29 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 31 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.08 1.64 7.58 -51.93 -0.39 1.25 16 34 H 0.39 4.15 8.62 -40.82 -0.35 3.80 16 35 H 0.40 2.82 8.56 -40.82 -0.35 2.47 16 36 H 0.12 0.63 8.07 -51.93 -0.42 0.21 16 37 H 0.10 0.60 8.05 -51.93 -0.42 0.18 16 38 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.11 0.71 6.36 -51.93 -0.33 0.38 16 41 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.09 2.38 6.06 -51.93 -0.31 2.06 16 44 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 364.56 15.07 5.49 5.49 Total: -1.00 -32.11 364.56 -8.61 -40.73 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -6.30 Total: 3.63 kcal Atomic # 6 Polarization: 11.59 SS G_CDS: -2.47 Total: 9.11 kcal Atomic # 7 Polarization: -58.11 SS G_CDS: -0.49 Total: -58.59 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: 0.08 Total: -10.46 kcal Atomic # 9 Polarization: -6.44 SS G_CDS: 0.11 Total: -6.33 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.03 Total: 16.43 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.11 -8.61 -40.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588341452.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.795 kcal (2) G-P(sol) polarization free energy of solvation -32.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds