Wall clock time and date at job start Tue Mar 31 2020 18:15:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31520 * 1
3 3 Si 1.86799 * 120.00001 * 2 1
4 4 H 1.48501 * 109.46817 * 269.99816 * 3 2 1
5 5 H 1.48495 * 109.47138 * 29.99686 * 3 2 1
6 6 H 1.48501 * 109.46836 * 149.99596 * 3 2 1
7 7 C 1.37882 * 119.99869 * 179.97438 * 2 1 3
8 8 H 1.07996 * 119.99676 * 180.02562 * 7 2 1
9 9 C 1.50700 * 119.99967 * 0.02562 * 7 2 1
10 10 O 1.42899 * 110.63874 * 298.31424 * 9 7 2
11 11 C 1.55157 * 110.87097 * 175.06652 * 9 7 2
12 12 C 1.55133 * 101.48578 * 205.89947 * 11 9 7
13 13 N 1.47427 * 104.72081 * 37.29249 * 12 11 9
14 14 C 1.34777 * 125.64523 * 155.82127 * 13 12 11
15 15 O 1.21593 * 119.99923 * 179.69095 * 14 13 12
16 16 N 1.34777 * 120.00128 * 359.69225 * 14 13 12
17 17 C 1.46498 * 119.99828 * 180.27942 * 16 14 13
18 18 C 1.50700 * 109.46769 * 179.72341 * 17 16 14
19 19 N 1.30700 * 127.01708 * 269.67693 * 18 17 16
20 20 O 1.21456 * 111.69360 * 179.84014 * 19 18 17
21 21 C 1.33171 * 111.26733 * 0.36821 * 20 19 18
22 22 C 1.35508 * 106.46076 * 359.86116 * 21 20 19
23 23 C 1.50077 * 124.86561 * 179.78417 * 22 21 20
24 24 C 1.53550 * 108.23089 * 343.88694 * 23 22 21
25 25 C 1.53108 * 109.53090 * 49.24436 * 24 23 22
26 26 C 1.50567 * 129.72921 * 179.90898 * 21 20 19
27 27 C 1.47021 * 108.70502 * 335.55275 * 13 12 11
28 28 H 0.97002 * 119.99668 * 0.02562 * 1 2 3
29 29 H 0.96697 * 114.00773 * 61.69240 * 10 9 7
30 30 H 1.09000 * 111.00405 * 324.13253 * 11 9 7
31 31 H 1.08999 * 111.00708 * 87.98931 * 11 9 7
32 32 H 1.09006 * 110.49306 * 278.45607 * 12 11 9
33 33 H 1.09000 * 110.34508 * 156.05554 * 12 11 9
34 34 H 0.97001 * 119.99727 * 359.97438 * 16 14 13
35 35 H 1.09004 * 109.46963 * 299.72135 * 17 16 14
36 36 H 1.08994 * 109.47567 * 59.72287 * 17 16 14
37 37 H 1.08992 * 109.71281 * 103.56718 * 23 22 21
38 38 H 1.08993 * 109.71402 * 224.16050 * 23 22 21
39 39 H 1.08991 * 109.46203 * 169.26917 * 24 23 22
40 40 H 1.09006 * 109.45819 * 289.24068 * 24 23 22
41 41 H 1.08996 * 109.42491 * 50.19823 * 25 24 23
42 42 H 1.09000 * 109.42797 * 170.03725 * 25 24 23
43 43 H 1.09004 * 109.69765 * 43.57707 * 26 21 20
44 44 H 1.09003 * 109.72733 * 283.00699 * 26 21 20
45 45 H 1.08998 * 109.88345 * 120.70261 * 27 13 12
46 46 H 1.08997 * 109.88642 * 241.71452 * 27 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 2.4967 2.0463 -1.4001
5 1 1.4466 2.6526 0.6999
6 1 3.5467 1.4401 0.7001
7 6 2.0046 -1.1941 0.0005
8 1 3.0845 -1.1941 0.0010
9 6 1.2510 -2.4992 0.0005
10 8 0.4494 -2.6180 1.1775
11 6 2.2256 -3.7001 -0.1235
12 6 1.3110 -4.7747 -0.7681
13 7 0.4620 -4.0263 -1.7128
14 6 -0.1444 -4.5407 -2.8010
15 8 -0.8290 -3.8279 -3.5094
16 7 0.0079 -5.8451 -3.1040
17 6 -0.6463 -6.4027 -4.2903
18 6 -0.3133 -7.8679 -4.4054
19 7 0.6966 -8.3976 -5.0441
20 8 0.7000 -9.6087 -4.9530
21 6 -0.3336 -10.0420 -4.2337
22 6 -1.0264 -8.9407 -3.8551
23 6 -2.2782 -8.9572 -3.0273
24 6 -2.8426 -10.3851 -3.0383
25 6 -1.7272 -11.3790 -2.7032
26 6 -0.7282 -11.4476 -3.8657
27 6 0.3812 -2.6274 -1.2677
28 1 -0.4850 0.8401 -0.0004
29 1 -0.2287 -1.9339 1.2624
30 1 3.0655 -3.4561 -0.7739
31 1 2.5740 -4.0235 0.8574
32 1 0.6974 -5.2592 -0.0085
33 1 1.9109 -5.5131 -1.3002
34 1 0.5543 -6.4136 -2.5391
35 1 -1.7259 -6.2814 -4.2006
36 1 -0.2944 -5.8792 -5.1792
37 1 -2.0463 -8.6615 -2.0042
38 1 -3.0090 -8.2691 -3.4522
39 1 -3.6371 -10.4673 -2.2968
40 1 -3.2437 -10.6095 -4.0267
41 1 -1.2108 -11.0535 -1.8002
42 1 -2.1588 -12.3660 -2.5373
43 1 0.1546 -12.0087 -3.5589
44 1 -1.1939 -11.9352 -4.7221
45 1 0.7626 -1.9678 -2.0471
46 1 -0.6530 -2.3705 -1.0383
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000592022180.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:15:48
Heat of formation + Delta-G solvation = -23.998721 kcal
Electronic energy + Delta-G solvation = -29218.035761 eV
Core-core repulsion = 25110.541364 eV
Total energy + Delta-G solvation = -4107.494397 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 335.168 amu
Computer time = 0.69 seconds
Orbital eigenvalues (eV)
-45.24064 -39.68894 -38.06610 -37.49121 -35.50791 -34.26565 -33.14149 -32.21449
-31.23623 -30.62645 -30.04752 -27.98821 -27.08001 -24.88882 -24.60649 -23.11794
-22.62810 -21.34832 -19.79085 -19.73631 -19.44351 -17.90124 -17.80507 -17.21943
-17.00599 -15.90233 -15.64106 -15.33378 -14.97879 -14.54672 -14.40837 -14.33299
-14.17762 -14.01544 -13.68732 -13.42664 -13.06070 -12.91005 -12.81634 -12.75539
-12.61300 -12.10043 -11.66515 -11.51595 -11.43729 -11.38349 -11.32568 -11.03934
-11.00183 -10.81605 -10.67017 -10.48781 -10.38953 -10.16804 -9.62475 -9.31342
-9.31124 -8.93699 -8.66944 -8.31432 -7.77980 -6.27026 -4.35415 1.17535
1.80716 2.72685 3.19113 3.24045 3.30228 3.33090 3.68804 3.87580
4.10680 4.27981 4.31472 4.37160 4.46041 4.61521 4.65340 4.81806
5.00076 5.00721 5.07395 5.19551 5.29258 5.34907 5.37458 5.49341
5.53030 5.62906 5.66261 5.69473 5.70954 5.78037 5.82944 5.92525
6.00069 6.08970 6.50401 6.60755 6.71413 6.89178 6.97259 7.25168
7.32140 7.60411 7.74481 7.99414 8.04610 8.48355 8.68138 9.07336
9.30322 9.39135 10.80824
Molecular weight = 335.17amu
Principal moments of inertia in cm(-1)
A = 0.023628 B = 0.002413 C = 0.002375
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1184.743057 B =11601.953534 C =11785.481792
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.893 5.893
2 C 0.070 3.930
3 Si 0.904 3.096
4 H -0.278 1.278
5 H -0.284 1.284
6 H -0.272 1.272
7 C -0.537 4.537
8 H 0.066 0.934
9 C 0.248 3.752
10 O -0.585 6.585
11 C -0.115 4.115
12 C 0.103 3.897
13 N -0.628 5.628
14 C 0.718 3.282
15 O -0.595 6.595
16 N -0.747 5.747
17 C 0.224 3.776
18 C 0.013 3.987
19 N -0.352 5.352
20 O 0.112 5.888
21 C -0.039 4.039
22 C -0.187 4.187
23 C -0.048 4.048
24 C -0.122 4.122
25 C -0.118 4.118
26 C -0.036 4.036
27 C 0.123 3.877
28 H 0.270 0.730
29 H 0.382 0.618
30 H 0.077 0.923
31 H 0.075 0.925
32 H 0.062 0.938
33 H 0.054 0.946
34 H 0.394 0.606
35 H 0.087 0.913
36 H 0.081 0.919
37 H 0.083 0.917
38 H 0.082 0.918
39 H 0.075 0.925
40 H 0.067 0.933
41 H 0.072 0.928
42 H 0.080 0.920
43 H 0.091 0.909
44 H 0.093 0.907
45 H 0.065 0.935
46 H 0.064 0.936
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.023 -23.954 -5.033 24.805
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.532 5.532
2 C -0.133 4.133
3 Si 0.731 3.269
4 H -0.204 1.204
5 H -0.210 1.210
6 H -0.197 1.197
7 C -0.575 4.575
8 H 0.084 0.916
9 C 0.208 3.792
10 O -0.394 6.394
11 C -0.153 4.153
12 C -0.020 4.020
13 N -0.365 5.365
14 C 0.420 3.580
15 O -0.473 6.473
16 N -0.406 5.406
17 C 0.099 3.901
18 C -0.145 4.145
19 N -0.055 5.055
20 O 0.044 5.956
21 C -0.103 4.103
22 C -0.191 4.191
23 C -0.085 4.085
24 C -0.159 4.159
25 C -0.156 4.156
26 C -0.074 4.074
27 C 0.001 3.999
28 H 0.080 0.920
29 H 0.232 0.768
30 H 0.095 0.905
31 H 0.094 0.906
32 H 0.081 0.919
33 H 0.072 0.928
34 H 0.228 0.772
35 H 0.105 0.895
36 H 0.099 0.901
37 H 0.101 0.899
38 H 0.101 0.899
39 H 0.094 0.906
40 H 0.086 0.914
41 H 0.090 0.910
42 H 0.099 0.901
43 H 0.110 0.890
44 H 0.111 0.889
45 H 0.083 0.917
46 H 0.082 0.918
Dipole moment (debyes) X Y Z Total
from point charges -3.341 -23.289 -6.250 24.343
hybrid contribution -0.240 1.066 0.422 1.172
sum -3.582 -22.223 -5.828 23.252
Atomic orbital electron populations
1.69700 1.05971 1.27910 1.49615 1.25077 0.95063 0.99765 0.93393
0.86400 0.79783 0.82427 0.78288 1.20423 1.20988 1.19713 1.21482
0.93651 0.90061 1.52342 0.91558 1.19506 0.86536 0.91993 0.81190
1.86101 1.51774 1.56623 1.44868 1.22759 0.97361 0.95071 1.00148
1.22289 0.92800 0.95125 0.91833 1.47956 1.50811 1.12998 1.24758
1.15417 0.80444 0.81084 0.81032 1.90898 1.44834 1.59245 1.52361
1.45012 1.56382 1.09470 1.29695 1.19138 0.98158 0.83564 0.89269
1.23092 0.93707 0.98205 0.99470 1.74332 1.20800 0.90009 1.20368
1.84749 1.39981 1.16743 1.54087 1.24146 0.89717 0.98702 0.97753
1.20693 1.01715 0.91114 1.05600 1.19991 0.91974 0.97808 0.98760
1.21677 0.97914 0.93753 1.02590 1.21643 0.96060 1.00416 0.97481
1.20234 1.00118 0.87455 0.99554 1.22888 1.01531 0.77087 0.98401
0.92004 0.76757 0.90457 0.90596 0.91944 0.92772 0.77192 0.89483
0.90056 0.89897 0.89921 0.90614 0.91380 0.90958 0.90126 0.89020
0.88903 0.91708 0.91782
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -23.91 10.96 55.43 0.61 -23.30 16
2 C 0.07 1.85 5.28 -17.82 -0.09 1.75 16
3 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16
4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16
5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16
6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16
7 C -0.54 -14.10 8.13 -34.44 -0.28 -14.38 16
8 H 0.07 1.71 7.78 -52.49 -0.41 1.31 16
9 C 0.25 6.01 0.85 -89.94 -0.08 5.93 16
10 O -0.58 -14.59 13.07 -35.23 -0.46 -15.05 16
11 C -0.12 -2.31 6.24 -24.46 -0.15 -2.46 16
12 C 0.10 1.83 6.58 -2.41 -0.02 1.81 16
13 N -0.63 -13.21 3.32 -176.09 -0.59 -13.79 16
14 C 0.72 14.81 8.49 -86.92 -0.74 14.07 16
15 O -0.59 -14.46 16.67 5.28 0.09 -14.37 16
16 N -0.75 -11.85 5.51 -66.41 -0.37 -12.22 16
17 C 0.22 3.16 6.25 -5.19 -0.03 3.12 16
18 C 0.01 0.16 6.69 -82.38 -0.55 -0.39 16
19 N -0.35 -4.76 12.10 33.47 0.41 -4.35 16
20 O 0.11 1.28 11.20 19.23 0.22 1.50 16
21 C -0.04 -0.35 7.39 -35.35 -0.26 -0.61 16
22 C -0.19 -1.89 6.05 -105.21 -0.64 -2.53 16
23 C -0.05 -0.38 6.29 -27.90 -0.18 -0.56 16
24 C -0.12 -0.67 5.92 -26.39 -0.16 -0.82 16
25 C -0.12 -0.54 5.88 -26.45 -0.16 -0.69 16
26 C -0.04 -0.18 6.31 -27.72 -0.17 -0.36 16
27 C 0.12 3.02 5.23 -3.06 -0.02 3.00 16
28 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16
29 H 0.38 9.77 7.45 45.56 0.34 10.11 16
30 H 0.08 1.50 8.04 -51.93 -0.42 1.09 16
31 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16
32 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16
33 H 0.05 0.80 7.29 -51.93 -0.38 0.42 16
34 H 0.39 5.58 6.94 -40.82 -0.28 5.29 16
35 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16
36 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16
37 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16
38 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16
39 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16
40 H 0.07 0.36 8.12 -51.93 -0.42 -0.06 16
41 H 0.07 0.37 8.12 -51.93 -0.42 -0.05 16
42 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16
43 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16
44 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16
45 H 0.06 1.75 7.81 -51.93 -0.41 1.35 16
46 H 0.06 1.71 7.92 -51.93 -0.41 1.30 16
LS Contribution 374.47 15.07 5.64 5.64
Total: -1.00 -31.40 374.47 -9.16 -40.56
By element:
Atomic # 1 Polarization: 19.05 SS G_CDS: -6.17 Total: 12.88 kcal
Atomic # 6 Polarization: 10.42 SS G_CDS: -3.52 Total: 6.90 kcal
Atomic # 7 Polarization: -53.72 SS G_CDS: 0.06 Total: -53.66 kcal
Atomic # 8 Polarization: -27.77 SS G_CDS: -0.16 Total: -27.93 kcal
Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal
Total LS contribution 5.64 Total: 5.64 kcal
Total: -31.40 -9.16 -40.56 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000592022180.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 16.564 kcal
(2) G-P(sol) polarization free energy of solvation -31.402 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.838 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.161 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.563 kcal
(6) G-S(sol) free energy of system = (1) + (5) -23.999 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.69 seconds