Wall clock time and date at job start Tue Mar 31 2020 18:15:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31520 * 1
3 3 Si 1.86799 * 120.00001 * 2 1
4 4 H 1.48501 * 109.46817 * 269.99816 * 3 2 1
5 5 H 1.48495 * 109.47138 * 29.99686 * 3 2 1
6 6 H 1.48501 * 109.46836 * 149.99596 * 3 2 1
7 7 C 1.37882 * 119.99869 * 179.97438 * 2 1 3
8 8 H 1.07996 * 119.99676 * 180.02562 * 7 2 1
9 9 C 1.50700 * 119.99967 * 0.02562 * 7 2 1
10 10 O 1.42899 * 110.63874 * 298.31424 * 9 7 2
11 11 C 1.55157 * 110.87097 * 175.06652 * 9 7 2
12 12 C 1.55133 * 101.48578 * 205.89947 * 11 9 7
13 13 N 1.47427 * 104.72081 * 37.29249 * 12 11 9
14 14 C 1.34777 * 125.64523 * 155.82127 * 13 12 11
15 15 O 1.21593 * 119.99923 * 179.69095 * 14 13 12
16 16 N 1.34777 * 120.00128 * 359.69225 * 14 13 12
17 17 C 1.46498 * 119.99828 * 180.27942 * 16 14 13
18 18 C 1.50700 * 109.46769 * 179.72341 * 17 16 14
19 19 N 1.30700 * 127.01708 * 269.67693 * 18 17 16
20 20 O 1.21456 * 111.69360 * 179.84014 * 19 18 17
21 21 C 1.33171 * 111.26733 * 0.36821 * 20 19 18
22 22 C 1.35508 * 106.46076 * 359.86116 * 21 20 19
23 23 C 1.50077 * 124.86561 * 179.78417 * 22 21 20
24 24 C 1.53550 * 108.23089 * 343.88694 * 23 22 21
25 25 C 1.53108 * 109.53090 * 49.24436 * 24 23 22
26 26 C 1.50567 * 129.72921 * 179.90898 * 21 20 19
27 27 C 1.47021 * 108.70502 * 335.55275 * 13 12 11
28 28 H 0.97002 * 119.99668 * 0.02562 * 1 2 3
29 29 H 0.96697 * 114.00773 * 61.69240 * 10 9 7
30 30 H 1.09000 * 111.00405 * 324.13253 * 11 9 7
31 31 H 1.08999 * 111.00708 * 87.98931 * 11 9 7
32 32 H 1.09006 * 110.49306 * 278.45607 * 12 11 9
33 33 H 1.09000 * 110.34508 * 156.05554 * 12 11 9
34 34 H 0.97001 * 119.99727 * 359.97438 * 16 14 13
35 35 H 1.09004 * 109.46963 * 299.72135 * 17 16 14
36 36 H 1.08994 * 109.47567 * 59.72287 * 17 16 14
37 37 H 1.08992 * 109.71281 * 103.56718 * 23 22 21
38 38 H 1.08993 * 109.71402 * 224.16050 * 23 22 21
39 39 H 1.08991 * 109.46203 * 169.26917 * 24 23 22
40 40 H 1.09006 * 109.45819 * 289.24068 * 24 23 22
41 41 H 1.08996 * 109.42491 * 50.19823 * 25 24 23
42 42 H 1.09000 * 109.42797 * 170.03725 * 25 24 23
43 43 H 1.09004 * 109.69765 * 43.57707 * 26 21 20
44 44 H 1.09003 * 109.72733 * 283.00699 * 26 21 20
45 45 H 1.08998 * 109.88345 * 120.70261 * 27 13 12
46 46 H 1.08997 * 109.88642 * 241.71452 * 27 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 2.4967 2.0463 -1.4001
5 1 1.4466 2.6526 0.6999
6 1 3.5467 1.4401 0.7001
7 6 2.0046 -1.1941 0.0005
8 1 3.0845 -1.1941 0.0010
9 6 1.2510 -2.4992 0.0005
10 8 0.4494 -2.6180 1.1775
11 6 2.2256 -3.7001 -0.1235
12 6 1.3110 -4.7747 -0.7681
13 7 0.4620 -4.0263 -1.7128
14 6 -0.1444 -4.5407 -2.8010
15 8 -0.8290 -3.8279 -3.5094
16 7 0.0079 -5.8451 -3.1040
17 6 -0.6463 -6.4027 -4.2903
18 6 -0.3133 -7.8679 -4.4054
19 7 0.6966 -8.3976 -5.0441
20 8 0.7000 -9.6087 -4.9530
21 6 -0.3336 -10.0420 -4.2337
22 6 -1.0264 -8.9407 -3.8551
23 6 -2.2782 -8.9572 -3.0273
24 6 -2.8426 -10.3851 -3.0383
25 6 -1.7272 -11.3790 -2.7032
26 6 -0.7282 -11.4476 -3.8657
27 6 0.3812 -2.6274 -1.2677
28 1 -0.4850 0.8401 -0.0004
29 1 -0.2287 -1.9339 1.2624
30 1 3.0655 -3.4561 -0.7739
31 1 2.5740 -4.0235 0.8574
32 1 0.6974 -5.2592 -0.0085
33 1 1.9109 -5.5131 -1.3002
34 1 0.5543 -6.4136 -2.5391
35 1 -1.7259 -6.2814 -4.2006
36 1 -0.2944 -5.8792 -5.1792
37 1 -2.0463 -8.6615 -2.0042
38 1 -3.0090 -8.2691 -3.4522
39 1 -3.6371 -10.4673 -2.2968
40 1 -3.2437 -10.6095 -4.0267
41 1 -1.2108 -11.0535 -1.8002
42 1 -2.1588 -12.3660 -2.5373
43 1 0.1546 -12.0087 -3.5589
44 1 -1.1939 -11.9352 -4.7221
45 1 0.7626 -1.9678 -2.0471
46 1 -0.6530 -2.3705 -1.0383
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000592022180.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:15:47
Heat of formation + Delta-G solvation = -45.860147 kcal
Electronic energy + Delta-G solvation = -29218.983743 eV
Core-core repulsion = 25110.541364 eV
Total energy + Delta-G solvation = -4108.442379 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 335.168 amu
Computer time = 0.80 seconds
Orbital eigenvalues (eV)
-46.12214 -41.34937 -39.27662 -38.59138 -36.72307 -36.10918 -34.31510 -34.23526
-31.90986 -31.75027 -31.19650 -29.70149 -28.52237 -26.61488 -25.32341 -24.26000
-23.72413 -22.23438 -21.48987 -21.18529 -20.36944 -19.32517 -18.96506 -18.74249
-18.14874 -17.49960 -17.00752 -16.82199 -16.35657 -16.09833 -15.64950 -15.38926
-14.86725 -14.82058 -14.79057 -14.68293 -14.64203 -14.38855 -14.10887 -13.74585
-13.70201 -13.51407 -13.28447 -13.22835 -12.86336 -12.56404 -12.37048 -12.29515
-12.24363 -12.11991 -11.85396 -11.81990 -11.53788 -11.48300 -11.19133 -11.09519
-10.66716 -10.42587 -10.30395 -10.03861 -9.49002 -8.27099 -6.42659 0.35246
0.88407 1.40533 1.42681 1.52262 1.73179 2.02897 2.04533 2.37282
2.87788 2.99670 3.02448 3.38461 3.71385 3.76019 3.95908 3.96235
4.01213 4.09243 4.14059 4.27712 4.31294 4.35808 4.46226 4.53212
4.54635 4.59521 4.62555 4.69172 4.92417 4.96351 5.02517 5.02722
5.09568 5.17866 5.19451 5.20199 5.22374 5.33324 5.35765 5.45362
5.47036 5.73410 5.95823 6.09025 6.63635 6.92455 7.15347 7.26888
7.34432 7.42821 8.79108
Molecular weight = 335.17amu
Principal moments of inertia in cm(-1)
A = 0.023628 B = 0.002413 C = 0.002375
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1184.743057 B =11601.953534 C =11785.481792
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.914 5.914
2 C 0.025 3.975
3 Si 0.963 3.037
4 H -0.280 1.280
5 H -0.280 1.280
6 H -0.265 1.265
7 C -0.557 4.557
8 H 0.067 0.933
9 C 0.235 3.765
10 O -0.585 6.585
11 C -0.110 4.110
12 C 0.108 3.892
13 N -0.633 5.633
14 C 0.716 3.284
15 O -0.638 6.638
16 N -0.725 5.725
17 C 0.227 3.773
18 C 0.000 4.000
19 N -0.382 5.382
20 O 0.110 5.890
21 C -0.026 4.026
22 C -0.196 4.196
23 C -0.050 4.050
24 C -0.119 4.119
25 C -0.116 4.116
26 C -0.036 4.036
27 C 0.142 3.858
28 H 0.270 0.730
29 H 0.376 0.624
30 H 0.082 0.918
31 H 0.092 0.908
32 H 0.075 0.925
33 H 0.093 0.907
34 H 0.406 0.594
35 H 0.092 0.908
36 H 0.066 0.934
37 H 0.079 0.921
38 H 0.076 0.924
39 H 0.087 0.913
40 H 0.071 0.929
41 H 0.067 0.933
42 H 0.106 0.894
43 H 0.110 0.890
44 H 0.113 0.887
45 H 0.029 0.971
46 H 0.032 0.968
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.434 -26.910 -4.495 27.499
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.553 5.553
2 C -0.176 4.176
3 Si 0.788 3.212
4 H -0.206 1.206
5 H -0.206 1.206
6 H -0.189 1.189
7 C -0.595 4.595
8 H 0.085 0.915
9 C 0.194 3.806
10 O -0.393 6.393
11 C -0.148 4.148
12 C -0.014 4.014
13 N -0.370 5.370
14 C 0.418 3.582
15 O -0.520 6.520
16 N -0.383 5.383
17 C 0.102 3.898
18 C -0.156 4.156
19 N -0.086 5.086
20 O 0.043 5.957
21 C -0.091 4.091
22 C -0.201 4.201
23 C -0.088 4.088
24 C -0.157 4.157
25 C -0.153 4.153
26 C -0.073 4.073
27 C 0.018 3.982
28 H 0.079 0.921
29 H 0.225 0.775
30 H 0.100 0.900
31 H 0.111 0.889
32 H 0.093 0.907
33 H 0.111 0.889
34 H 0.242 0.758
35 H 0.110 0.890
36 H 0.085 0.915
37 H 0.098 0.902
38 H 0.095 0.905
39 H 0.106 0.894
40 H 0.090 0.910
41 H 0.085 0.915
42 H 0.124 0.876
43 H 0.128 0.872
44 H 0.131 0.869
45 H 0.048 0.952
46 H 0.050 0.950
Dipole moment (debyes) X Y Z Total
from point charges -2.724 -26.309 -5.700 27.057
hybrid contribution -0.451 1.908 0.222 1.973
sum -3.175 -24.401 -5.478 25.209
Atomic orbital electron populations
1.69805 1.07047 1.28470 1.50012 1.25817 0.95832 1.02796 0.93118
0.85478 0.78870 0.78810 0.78020 1.20637 1.20585 1.18915 1.21815
0.93908 0.91342 1.52483 0.91526 1.19685 0.87016 0.93411 0.80441
1.86090 1.51669 1.56277 1.45271 1.22752 0.96850 0.93718 1.01463
1.22442 0.92440 0.94776 0.91747 1.47884 1.51532 1.12041 1.25499
1.15567 0.79996 0.82156 0.80513 1.90863 1.46677 1.60740 1.53730
1.44790 1.55764 1.07715 1.30018 1.19096 0.98173 0.84708 0.87774
1.22917 0.94552 0.97580 1.00565 1.74318 1.21720 0.91044 1.21514
1.84712 1.40756 1.15944 1.54324 1.24916 0.88128 1.00295 0.95733
1.20922 1.02520 0.90548 1.06065 1.20090 0.91014 0.99701 0.97999
1.21691 0.98540 0.92155 1.03281 1.21675 0.95447 1.01368 0.96816
1.20541 1.01176 0.85049 1.00576 1.22392 0.99386 0.78715 0.97726
0.92067 0.77529 0.89992 0.88937 0.90663 0.88923 0.75777 0.89022
0.91531 0.90221 0.90549 0.89446 0.91016 0.91466 0.87584 0.87180
0.86898 0.95234 0.94984
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -50.26 10.96 21.45 0.24 -50.03 16
2 C 0.03 1.35 5.28 84.66 0.45 1.80 16
3 Si 0.96 42.62 29.54 68.60 2.03 44.65 16
4 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16
5 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16
6 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16
7 C -0.56 -29.52 8.13 25.60 0.21 -29.32 16
8 H 0.07 3.44 7.78 -2.91 -0.02 3.42 16
9 C 0.23 11.45 0.85 -10.35 -0.01 11.45 16
10 O -0.59 -29.43 13.07 -148.98 -1.95 -31.38 16
11 C -0.11 -4.23 6.24 32.06 0.20 -4.03 16
12 C 0.11 3.61 6.58 86.93 0.57 4.18 16
13 N -0.63 -26.68 3.32 -829.29 -2.76 -29.44 16
14 C 0.72 29.86 8.49 179.05 1.52 31.38 16
15 O -0.64 -32.15 16.67 -4.01 -0.07 -32.22 16
16 N -0.72 -22.67 5.51 -482.30 -2.66 -25.33 16
17 C 0.23 6.46 6.25 85.63 0.54 7.00 16
18 C 0.00 0.01 6.69 43.17 0.29 0.30 16
19 N -0.38 -10.10 12.10 -48.62 -0.59 -10.69 16
20 O 0.11 2.38 11.20 78.82 0.88 3.26 16
21 C -0.03 -0.41 7.39 25.01 0.18 -0.23 16
22 C -0.20 -3.69 6.05 -20.24 -0.12 -3.81 16
23 C -0.05 -0.73 6.29 29.84 0.19 -0.54 16
24 C -0.12 -0.97 5.92 30.82 0.18 -0.79 16
25 C -0.12 -0.62 5.88 30.77 0.18 -0.44 16
26 C -0.04 -0.24 6.31 29.95 0.19 -0.05 16
27 C 0.14 7.20 5.23 86.73 0.45 7.65 16
28 H 0.27 14.23 8.31 -92.71 -0.77 13.46 16
29 H 0.38 19.75 7.45 -74.06 -0.55 19.19 16
30 H 0.08 3.06 8.04 -2.39 -0.02 3.04 16
31 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16
32 H 0.08 2.37 8.14 -2.38 -0.02 2.35 16
33 H 0.09 2.42 7.29 -2.39 -0.02 2.40 16
34 H 0.41 10.82 6.94 -92.71 -0.64 10.17 16
35 H 0.09 2.52 8.14 -2.38 -0.02 2.50 16
36 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16
37 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16
38 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16
39 H 0.09 0.53 8.14 -2.39 -0.02 0.52 16
40 H 0.07 0.55 8.12 -2.38 -0.02 0.53 16
41 H 0.07 0.47 8.12 -2.39 -0.02 0.45 16
42 H 0.11 0.11 8.14 -2.39 -0.02 0.09 16
43 H 0.11 0.40 8.14 -2.38 -0.02 0.39 16
44 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16
45 H 0.03 1.67 7.81 -2.39 -0.02 1.65 16
46 H 0.03 1.80 7.92 -2.39 -0.02 1.78 16
Total: -1.00 -70.44 374.47 -0.03 -70.47
By element:
Atomic # 1 Polarization: 36.34 SS G_CDS: -0.17 Total: 36.16 kcal
Atomic # 6 Polarization: 19.52 SS G_CDS: 5.02 Total: 24.54 kcal
Atomic # 7 Polarization: -109.72 SS G_CDS: -5.77 Total: -115.49 kcal
Atomic # 8 Polarization: -59.21 SS G_CDS: -1.13 Total: -60.34 kcal
Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal
Total: -70.44 -0.03 -70.47 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000592022180.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 24.611 kcal
(2) G-P(sol) polarization free energy of solvation -70.443 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.831 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.029 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.471 kcal
(6) G-S(sol) free energy of system = (1) + (5) -45.860 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.80 seconds