Wall clock time and date at job start Tue Mar 31 2020 18:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.76200 * 102.99756 * 2 1 4 4 C 1.39555 * 119.64332 * 180.02562 * 3 2 1 5 5 C 1.38218 * 119.28737 * 179.97438 * 4 3 2 6 6 C 1.38868 * 118.59270 * 359.97438 * 5 4 3 7 7 C 1.39102 * 119.23658 * 359.97438 * 6 5 4 8 8 C 1.48149 * 119.67602 * 180.02562 * 7 6 5 9 9 O 1.21518 * 120.00028 * 0.02562 * 8 7 6 10 10 N 1.34773 * 119.99813 * 180.02562 * 8 7 6 11 11 C 1.46501 * 119.99975 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.47282 * 179.97438 * 11 10 8 13 13 C 1.53040 * 109.46174 * 295.03090 * 12 11 10 14 14 C 1.53199 * 109.31011 * 178.59836 * 13 12 11 15 15 N 1.46928 * 108.76248 * 54.65584 * 14 13 12 16 16 C 1.36930 * 120.62966 * 126.36399 * 15 14 13 17 17 H 1.08003 * 120.00206 * 331.84971 * 16 15 14 18 18 C 1.38816 * 120.00398 * 151.85598 * 16 15 14 19 19 N 1.31614 * 119.99509 * 343.06997 * 18 16 15 20 20 Si 1.86794 * 120.00245 * 163.07094 * 18 16 15 21 21 H 1.48501 * 109.47468 * 60.00202 * 20 18 16 22 22 H 1.48505 * 109.47144 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47170 * 299.99882 * 20 18 16 24 24 C 1.46924 * 118.74168 * 306.37948 * 15 14 13 25 25 C 1.53038 * 109.46021 * 174.96989 * 12 11 10 26 26 N 1.32127 * 119.64240 * 359.71875 * 3 2 1 27 27 H 1.08992 * 109.47426 * 60.00721 * 1 2 3 28 28 H 1.09005 * 109.46603 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47116 * 300.00095 * 1 2 3 30 30 H 1.07997 * 120.35764 * 359.95289 * 4 3 2 31 31 H 1.08009 * 120.70681 * 180.02562 * 5 4 3 32 32 H 1.07991 * 120.38090 * 179.97438 * 6 5 4 33 33 H 0.96995 * 120.00374 * 359.97438 * 10 8 7 34 34 H 1.08999 * 109.47057 * 300.00456 * 11 10 8 35 35 H 1.09009 * 109.47071 * 60.00223 * 11 10 8 36 36 H 1.09004 * 109.45329 * 55.00240 * 12 11 10 37 37 H 1.08993 * 109.49636 * 298.56278 * 13 12 11 38 38 H 1.08994 * 109.50185 * 58.66274 * 13 12 11 39 39 H 1.08992 * 109.59927 * 294.86798 * 14 13 12 40 40 H 1.08995 * 109.70056 * 174.50319 * 14 13 12 41 41 H 0.97002 * 120.00254 * 179.97438 * 19 18 16 42 42 H 1.09003 * 109.58588 * 293.82945 * 24 15 14 43 43 H 1.08992 * 109.70920 * 173.47022 * 24 15 14 44 44 H 1.08999 * 109.50304 * 301.34655 * 25 12 11 45 45 H 1.09001 * 109.49370 * 61.43892 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 3.5474 2.1166 -0.0005 5 6 3.8499 3.4653 -0.0011 6 6 2.8056 4.3806 -0.0016 7 6 1.4946 3.9156 -0.0021 8 6 0.3730 4.8836 -0.0033 9 8 0.6006 6.0772 -0.0042 10 7 -0.8997 4.4402 -0.0032 11 6 -2.0088 5.3973 -0.0049 12 6 -3.3374 4.6385 -0.0052 13 6 -3.4764 3.8542 -1.3120 14 6 -4.7913 3.0682 -1.2937 15 7 -5.8956 4.0006 -1.0293 16 6 -6.9749 4.0600 -1.8699 17 1 -6.8614 3.8057 -2.9134 18 6 -8.2151 4.4471 -1.3809 19 7 -8.4444 4.4350 -0.0850 20 14 -9.5583 4.9851 -2.5622 21 1 -9.8719 3.8731 -3.4950 22 1 -10.7776 5.3452 -1.7945 23 1 -9.0939 6.1644 -3.3360 24 6 -5.8197 4.8684 0.1538 25 6 -4.4931 5.6339 0.1196 26 7 1.2384 2.6119 -0.0056 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 4.3373 1.3801 -0.0002 31 1 4.8767 3.8002 -0.0019 32 1 3.0089 5.4412 -0.0016 33 1 -1.0814 3.4874 -0.0029 34 1 -1.9485 6.0249 0.8842 35 1 -1.9478 6.0226 -0.8958 36 1 -3.3608 3.9473 0.8374 37 1 -3.4780 4.5469 -2.1535 38 1 -2.6404 3.1620 -1.4116 39 1 -4.7549 2.3130 -0.5087 40 1 -4.9440 2.5852 -2.2587 41 1 -9.3108 4.7059 0.2569 42 1 -5.8670 4.2598 1.0570 43 1 -6.6495 5.5749 0.1454 44 1 -4.3808 6.2086 1.0389 45 1 -4.4851 6.3096 -0.7356 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592770319.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:34 Heat of formation + Delta-G solvation = 9.741678 kcal Electronic energy + Delta-G solvation = -26209.836424 eV Core-core repulsion = 22546.557992 eV Total energy + Delta-G solvation = -3663.278432 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.82189 -39.19730 -37.78378 -35.05737 -33.34503 -32.66658 -31.85283 -30.73825 -29.72785 -29.13914 -27.11667 -24.99617 -24.19542 -23.64868 -22.25574 -21.22045 -20.77840 -19.24571 -18.60243 -17.51637 -16.72617 -16.50461 -16.27068 -15.59982 -15.56963 -14.89296 -14.68877 -14.55937 -14.21359 -13.96424 -13.78268 -13.63639 -13.51279 -13.37053 -13.12428 -12.92701 -12.40340 -12.35461 -12.32386 -11.89606 -11.34939 -11.10163 -10.99103 -10.72120 -10.53853 -10.52815 -10.45443 -10.26160 -10.23262 -10.12956 -10.01296 -9.87541 -9.56194 -9.45431 -9.03974 -8.46872 -7.96535 -6.67284 -5.79280 -3.21715 0.26533 0.68515 1.07229 1.88021 2.48885 3.00328 3.38171 3.44014 3.45478 3.48086 3.92285 4.40078 4.49537 4.56754 4.62285 4.86731 4.95371 4.96318 5.02637 5.09422 5.20890 5.36702 5.40524 5.49293 5.57212 5.59408 5.67955 5.84268 5.90415 6.01827 6.04232 6.12186 6.31085 6.37790 6.45262 6.58893 6.67297 6.75253 6.80275 6.96774 7.06131 7.36019 7.49643 7.65267 7.79004 8.06688 8.45118 9.21329 9.84794 10.41613 11.29268 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.017920 B = 0.002483 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.113169 B =11273.567023 C =12397.018588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 S -0.076 6.076 3 C 0.120 3.880 4 C -0.131 4.131 5 C -0.064 4.064 6 C -0.119 4.119 7 C 0.099 3.901 8 C 0.567 3.433 9 O -0.535 6.535 10 N -0.702 5.702 11 C 0.120 3.880 12 C -0.090 4.090 13 C -0.127 4.127 14 C 0.146 3.854 15 N -0.592 5.592 16 C -0.253 4.253 17 H 0.064 0.936 18 C 0.002 3.998 19 N -0.903 5.903 20 Si 0.902 3.098 21 H -0.283 1.283 22 H -0.290 1.290 23 H -0.284 1.284 24 C 0.172 3.828 25 C -0.133 4.133 26 N -0.466 5.466 27 H 0.091 0.909 28 H 0.106 0.894 29 H 0.090 0.910 30 H 0.145 0.855 31 H 0.148 0.852 32 H 0.151 0.849 33 H 0.409 0.591 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.060 0.940 38 H 0.046 0.954 39 H 0.016 0.984 40 H 0.052 0.948 41 H 0.254 0.746 42 H 0.017 0.983 43 H 0.088 0.912 44 H 0.051 0.949 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.586 -5.993 2.110 25.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.301 4.301 2 S 0.163 5.837 3 C -0.131 4.131 4 C -0.157 4.157 5 C -0.091 4.091 6 C -0.143 4.143 7 C -0.042 4.042 8 C 0.350 3.650 9 O -0.411 6.411 10 N -0.352 5.352 11 C -0.002 4.002 12 C -0.109 4.109 13 C -0.167 4.167 14 C 0.020 3.980 15 N -0.315 5.315 16 C -0.383 4.383 17 H 0.082 0.918 18 C -0.196 4.196 19 N -0.548 5.548 20 Si 0.732 3.268 21 H -0.209 1.209 22 H -0.216 1.216 23 H -0.210 1.210 24 C 0.046 3.954 25 C -0.173 4.173 26 N -0.182 5.182 27 H 0.110 0.890 28 H 0.125 0.875 29 H 0.109 0.891 30 H 0.162 0.838 31 H 0.166 0.834 32 H 0.169 0.831 33 H 0.245 0.755 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.065 0.935 39 H 0.034 0.966 40 H 0.071 0.929 41 H 0.064 0.936 42 H 0.035 0.965 43 H 0.106 0.894 44 H 0.070 0.930 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 24.260 -6.398 2.185 25.184 hybrid contribution -0.766 1.155 -0.530 1.484 sum 23.494 -5.243 1.655 24.129 Atomic orbital electron populations 1.23535 0.92694 1.06689 1.07171 1.85534 1.08863 0.97992 1.91356 1.23108 0.91960 0.98436 0.99615 1.21865 0.95783 0.97165 1.00910 1.21558 1.00120 0.92141 0.95292 1.22112 0.91793 1.02264 0.98144 1.21191 0.93756 0.89972 0.99270 1.17835 0.82642 0.87136 0.77344 1.90792 1.84479 1.15432 1.50436 1.45960 1.05093 1.11622 1.72562 1.21694 0.84850 0.91500 1.02196 1.21313 0.92698 0.97966 0.98892 1.22076 0.98738 0.99092 0.96751 1.20876 0.87331 0.91393 0.98425 1.44035 1.18880 1.40213 1.28352 1.19141 0.86577 1.42342 0.90216 0.91817 1.25040 0.96929 1.01915 0.95738 1.70016 1.22748 1.50696 1.11318 0.86375 0.81237 0.78894 0.80288 1.20908 1.21632 1.21026 1.20755 0.93228 0.93037 0.88350 1.22183 0.96934 0.97674 1.00461 1.67934 1.35359 1.01641 1.13259 0.89029 0.87501 0.89137 0.83767 0.83430 0.83107 0.75468 0.91447 0.91278 0.91275 0.92158 0.93502 0.96631 0.92905 0.93582 0.96470 0.89387 0.93022 0.92342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.02 10.01 101.05 1.01 -0.01 16 2 S -0.08 -0.64 22.55 -107.50 -2.42 -3.07 16 3 C 0.12 1.18 7.00 -16.93 -0.12 1.06 16 4 C -0.13 -1.01 9.84 -39.10 -0.38 -1.39 16 5 C -0.06 -0.45 10.16 -39.36 -0.40 -0.85 16 6 C -0.12 -1.16 9.63 -39.03 -0.38 -1.53 16 7 C 0.10 1.19 6.74 -83.03 -0.56 0.63 16 8 C 0.57 7.98 7.81 -12.19 -0.10 7.89 16 9 O -0.53 -8.90 16.31 5.35 0.09 -8.81 16 10 N -0.70 -9.35 5.26 -61.15 -0.32 -9.67 16 11 C 0.12 1.73 5.06 -4.04 -0.02 1.71 16 12 C -0.09 -1.42 2.19 -90.58 -0.20 -1.62 16 13 C -0.13 -2.11 5.25 -26.61 -0.14 -2.25 16 14 C 0.15 2.97 6.52 -3.71 -0.02 2.95 16 15 N -0.59 -14.59 2.99 -172.32 -0.52 -15.11 16 16 C -0.25 -6.91 9.58 -15.06 -0.14 -7.05 16 17 H 0.06 1.71 7.89 -52.48 -0.41 1.30 16 18 C 0.00 0.06 4.92 -17.43 -0.09 -0.02 16 19 N -0.90 -26.07 11.19 55.49 0.62 -25.44 16 20 Si 0.90 21.65 29.59 -169.99 -5.03 16.62 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 C 0.17 4.02 5.30 -3.71 -0.02 4.00 16 25 C -0.13 -2.44 5.36 -26.61 -0.14 -2.59 16 26 N -0.47 -5.26 8.60 -8.66 -0.07 -5.34 16 27 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.11 0.64 8.14 -51.92 -0.42 0.22 16 29 H 0.09 0.74 8.14 -51.92 -0.42 0.31 16 30 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 31 H 0.15 0.55 8.06 -52.48 -0.42 0.13 16 32 H 0.15 1.37 7.63 -52.49 -0.40 0.97 16 33 H 0.41 5.01 6.97 -40.82 -0.28 4.73 16 34 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.07 1.05 8.14 -51.92 -0.42 0.63 16 36 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.05 0.66 7.15 -51.93 -0.37 0.29 16 39 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.05 1.06 7.93 -51.93 -0.41 0.65 16 41 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 42 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.09 2.32 6.06 -51.93 -0.31 2.00 16 44 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 380.82 15.07 5.74 5.74 Total: -1.00 -31.44 380.82 -10.44 -41.88 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -6.83 Total: 2.29 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: -1.70 Total: 0.92 kcal Atomic # 7 Polarization: -55.28 SS G_CDS: -0.29 Total: -55.57 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: 0.09 Total: -8.81 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.03 Total: 16.62 kcal Atomic # 16 Polarization: -0.64 SS G_CDS: -2.42 Total: -3.07 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.44 -10.44 -41.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592770319.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.626 kcal (2) G-P(sol) polarization free energy of solvation -31.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds