Wall clock time and date at job start Tue Mar 31 2020 18:06:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.76200 * 102.99756 * 2 1 4 4 C 1.39555 * 119.64332 * 180.02562 * 3 2 1 5 5 C 1.38218 * 119.28737 * 179.97438 * 4 3 2 6 6 C 1.38868 * 118.59270 * 359.97438 * 5 4 3 7 7 C 1.39102 * 119.23658 * 359.97438 * 6 5 4 8 8 C 1.48149 * 119.67602 * 180.02562 * 7 6 5 9 9 O 1.21518 * 120.00028 * 0.02562 * 8 7 6 10 10 N 1.34773 * 119.99813 * 180.02562 * 8 7 6 11 11 C 1.46501 * 119.99975 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.47282 * 179.97438 * 11 10 8 13 13 C 1.53040 * 109.46174 * 295.03090 * 12 11 10 14 14 C 1.53199 * 109.31011 * 178.59836 * 13 12 11 15 15 N 1.46928 * 108.76248 * 54.65584 * 14 13 12 16 16 C 1.36930 * 120.62966 * 126.36399 * 15 14 13 17 17 H 1.08003 * 120.00206 * 331.84971 * 16 15 14 18 18 C 1.38816 * 120.00398 * 151.85598 * 16 15 14 19 19 N 1.31614 * 119.99509 * 343.06997 * 18 16 15 20 20 Si 1.86794 * 120.00245 * 163.07094 * 18 16 15 21 21 H 1.48501 * 109.47468 * 60.00202 * 20 18 16 22 22 H 1.48505 * 109.47144 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47170 * 299.99882 * 20 18 16 24 24 C 1.46924 * 118.74168 * 306.37948 * 15 14 13 25 25 C 1.53038 * 109.46021 * 174.96989 * 12 11 10 26 26 N 1.32127 * 119.64240 * 359.71875 * 3 2 1 27 27 H 1.08992 * 109.47426 * 60.00721 * 1 2 3 28 28 H 1.09005 * 109.46603 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47116 * 300.00095 * 1 2 3 30 30 H 1.07997 * 120.35764 * 359.95289 * 4 3 2 31 31 H 1.08009 * 120.70681 * 180.02562 * 5 4 3 32 32 H 1.07991 * 120.38090 * 179.97438 * 6 5 4 33 33 H 0.96995 * 120.00374 * 359.97438 * 10 8 7 34 34 H 1.08999 * 109.47057 * 300.00456 * 11 10 8 35 35 H 1.09009 * 109.47071 * 60.00223 * 11 10 8 36 36 H 1.09004 * 109.45329 * 55.00240 * 12 11 10 37 37 H 1.08993 * 109.49636 * 298.56278 * 13 12 11 38 38 H 1.08994 * 109.50185 * 58.66274 * 13 12 11 39 39 H 1.08992 * 109.59927 * 294.86798 * 14 13 12 40 40 H 1.08995 * 109.70056 * 174.50319 * 14 13 12 41 41 H 0.97002 * 120.00254 * 179.97438 * 19 18 16 42 42 H 1.09003 * 109.58588 * 293.82945 * 24 15 14 43 43 H 1.08992 * 109.70920 * 173.47022 * 24 15 14 44 44 H 1.08999 * 109.50304 * 301.34655 * 25 12 11 45 45 H 1.09001 * 109.49370 * 61.43892 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 3.5474 2.1166 -0.0005 5 6 3.8499 3.4653 -0.0011 6 6 2.8056 4.3806 -0.0016 7 6 1.4946 3.9156 -0.0021 8 6 0.3730 4.8836 -0.0033 9 8 0.6006 6.0772 -0.0042 10 7 -0.8997 4.4402 -0.0032 11 6 -2.0088 5.3973 -0.0049 12 6 -3.3374 4.6385 -0.0052 13 6 -3.4764 3.8542 -1.3120 14 6 -4.7913 3.0682 -1.2937 15 7 -5.8956 4.0006 -1.0293 16 6 -6.9749 4.0600 -1.8699 17 1 -6.8614 3.8057 -2.9134 18 6 -8.2151 4.4471 -1.3809 19 7 -8.4444 4.4350 -0.0850 20 14 -9.5583 4.9851 -2.5622 21 1 -9.8719 3.8731 -3.4950 22 1 -10.7776 5.3452 -1.7945 23 1 -9.0939 6.1644 -3.3360 24 6 -5.8197 4.8684 0.1538 25 6 -4.4931 5.6339 0.1196 26 7 1.2384 2.6119 -0.0056 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 4.3373 1.3801 -0.0002 31 1 4.8767 3.8002 -0.0019 32 1 3.0089 5.4412 -0.0016 33 1 -1.0814 3.4874 -0.0029 34 1 -1.9485 6.0249 0.8842 35 1 -1.9478 6.0226 -0.8958 36 1 -3.3608 3.9473 0.8374 37 1 -3.4780 4.5469 -2.1535 38 1 -2.6404 3.1620 -1.4116 39 1 -4.7549 2.3130 -0.5087 40 1 -4.9440 2.5852 -2.2587 41 1 -9.3108 4.7059 0.2569 42 1 -5.8670 4.2598 1.0570 43 1 -6.6495 5.5749 0.1454 44 1 -4.3808 6.2086 1.0389 45 1 -4.4851 6.3096 -0.7356 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592770319.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:33 Heat of formation + Delta-G solvation = -9.171508 kcal Electronic energy + Delta-G solvation = -26210.656561 eV Core-core repulsion = 22546.557992 eV Total energy + Delta-G solvation = -3664.098569 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.66539 -40.23217 -39.27056 -36.50256 -34.64956 -33.70673 -32.79116 -32.29133 -31.40497 -29.73929 -28.61132 -26.32341 -25.15242 -24.73766 -23.83440 -22.71441 -21.85303 -20.78006 -19.55185 -18.68998 -18.27899 -17.18630 -17.10643 -16.81219 -16.62496 -16.57020 -15.77562 -15.56353 -15.35514 -15.30228 -15.02269 -14.92673 -14.71168 -14.42519 -14.16135 -14.04314 -13.86122 -13.51199 -13.44488 -13.01917 -12.97581 -12.83190 -12.56390 -12.29749 -12.05051 -11.88361 -11.84749 -11.65896 -11.37926 -11.18314 -11.18143 -11.13763 -10.85647 -10.74324 -10.53173 -10.16802 -8.67577 -8.60792 -7.87752 -5.32795 -0.47760 0.03322 0.43940 1.24901 1.45973 1.48472 1.55086 1.58386 1.99387 2.50983 2.67863 3.09646 3.26655 3.69232 3.75671 3.81312 3.89572 3.91270 4.01317 4.05483 4.21512 4.34233 4.38063 4.40557 4.47466 4.51332 4.64569 4.69478 4.76348 4.91265 4.92404 4.97609 4.98986 5.05231 5.10693 5.24641 5.25920 5.29881 5.40095 5.42279 5.53592 5.65023 5.77545 6.21631 6.39447 6.54144 7.02185 7.15381 7.87318 8.38378 9.18364 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.017920 B = 0.002483 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.113169 B =11273.567023 C =12397.018588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 S -0.069 6.069 3 C 0.099 3.901 4 C -0.123 4.123 5 C -0.052 4.052 6 C -0.123 4.123 7 C 0.072 3.928 8 C 0.566 3.434 9 O -0.567 6.567 10 N -0.697 5.697 11 C 0.133 3.867 12 C -0.078 4.078 13 C -0.113 4.113 14 C 0.142 3.858 15 N -0.611 5.611 16 C -0.264 4.264 17 H 0.064 0.936 18 C -0.050 4.050 19 N -0.934 5.934 20 Si 0.965 3.035 21 H -0.275 1.275 22 H -0.294 1.294 23 H -0.280 1.280 24 C 0.178 3.822 25 C -0.121 4.121 26 N -0.479 5.479 27 H 0.084 0.916 28 H 0.123 0.877 29 H 0.084 0.916 30 H 0.173 0.827 31 H 0.188 0.812 32 H 0.153 0.847 33 H 0.415 0.585 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.074 0.926 37 H 0.051 0.949 38 H 0.077 0.923 39 H 0.018 0.982 40 H 0.051 0.949 41 H 0.250 0.750 42 H -0.002 1.002 43 H 0.052 0.948 44 H 0.071 0.929 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.256 -6.807 1.622 28.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.302 4.302 2 S 0.170 5.830 3 C -0.152 4.152 4 C -0.149 4.149 5 C -0.079 4.079 6 C -0.147 4.147 7 C -0.068 4.068 8 C 0.352 3.648 9 O -0.446 6.446 10 N -0.348 5.348 11 C 0.010 3.990 12 C -0.097 4.097 13 C -0.152 4.152 14 C 0.017 3.983 15 N -0.335 5.335 16 C -0.394 4.394 17 H 0.082 0.918 18 C -0.245 4.245 19 N -0.580 5.580 20 Si 0.793 3.207 21 H -0.201 1.201 22 H -0.220 1.220 23 H -0.206 1.206 24 C 0.052 3.948 25 C -0.161 4.161 26 N -0.195 5.195 27 H 0.103 0.897 28 H 0.141 0.859 29 H 0.103 0.897 30 H 0.191 0.809 31 H 0.205 0.795 32 H 0.170 0.830 33 H 0.252 0.748 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.093 0.907 37 H 0.070 0.930 38 H 0.095 0.905 39 H 0.036 0.964 40 H 0.070 0.930 41 H 0.059 0.941 42 H 0.016 0.984 43 H 0.071 0.929 44 H 0.089 0.911 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 26.954 -7.236 1.686 27.960 hybrid contribution -1.514 1.300 -0.369 2.030 sum 25.440 -5.936 1.317 26.156 Atomic orbital electron populations 1.23573 0.92453 1.07620 1.06548 1.85464 1.09200 0.97127 1.91243 1.23506 0.92856 0.98754 1.00095 1.22285 0.95581 0.98135 0.98877 1.21981 1.01234 0.91369 0.93311 1.22290 0.91645 1.02994 0.97778 1.20957 0.93717 0.90031 1.02110 1.18184 0.83131 0.87184 0.76335 1.90764 1.84987 1.16853 1.52022 1.45860 1.04810 1.11669 1.72441 1.21418 0.84284 0.91309 1.02030 1.21142 0.92472 0.97335 0.98719 1.21909 0.97536 0.99049 0.96740 1.21036 0.87699 0.91297 0.98289 1.44312 1.19377 1.41583 1.28230 1.19466 0.87554 1.41683 0.90739 0.91820 1.25773 0.99075 1.02528 0.97159 1.70167 1.22950 1.51977 1.12933 0.85379 0.78400 0.78559 0.78345 1.20094 1.21969 1.20586 1.20562 0.94639 0.92257 0.87328 1.21980 0.95232 0.97661 1.01226 1.67827 1.36290 1.01502 1.13907 0.89651 0.85863 0.89685 0.80937 0.79516 0.82969 0.74770 0.91249 0.91932 0.90720 0.93023 0.90470 0.96440 0.93038 0.94096 0.98374 0.92927 0.91079 0.92957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.87 10.01 113.37 1.14 -0.74 16 2 S -0.07 -1.03 22.55 -56.49 -1.27 -2.30 16 3 C 0.10 1.74 7.00 84.97 0.59 2.34 16 4 C -0.12 -1.50 9.84 22.58 0.22 -1.27 16 5 C -0.05 -0.57 10.16 22.42 0.23 -0.34 16 6 C -0.12 -2.17 9.63 22.63 0.22 -1.95 16 7 C 0.07 1.64 6.74 41.83 0.28 1.92 16 8 C 0.57 15.59 7.81 86.88 0.68 16.27 16 9 O -0.57 -18.73 16.31 -3.77 -0.06 -18.80 16 10 N -0.70 -17.82 5.26 -465.67 -2.45 -20.27 16 11 C 0.13 3.67 5.06 86.38 0.44 4.11 16 12 C -0.08 -2.37 2.19 -10.77 -0.02 -2.40 16 13 C -0.11 -3.61 5.25 30.67 0.16 -3.44 16 14 C 0.14 5.72 6.52 86.36 0.56 6.28 16 15 N -0.61 -30.58 2.99 -699.10 -2.09 -32.67 16 16 C -0.26 -14.62 9.58 84.04 0.81 -13.81 16 17 H 0.06 3.44 7.89 -2.91 -0.02 3.42 16 18 C -0.05 -2.80 4.92 84.86 0.42 -2.39 16 19 N -0.93 -55.45 11.19 21.65 0.24 -55.21 16 20 Si 0.97 45.15 29.59 68.60 2.03 47.18 16 21 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 22 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 23 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 24 C 0.18 8.51 5.30 86.36 0.46 8.97 16 25 C -0.12 -4.44 5.36 30.67 0.16 -4.28 16 26 N -0.48 -10.18 8.60 -181.32 -1.56 -11.74 16 27 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.17 1.07 8.06 -2.91 -0.02 1.05 16 31 H 0.19 0.51 8.06 -2.91 -0.02 0.49 16 32 H 0.15 2.57 7.63 -2.92 -0.02 2.55 16 33 H 0.41 9.59 6.97 -92.71 -0.65 8.94 16 34 H 0.07 1.92 8.14 -2.39 -0.02 1.91 16 35 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 36 H 0.07 2.25 8.14 -2.38 -0.02 2.23 16 37 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.08 2.01 7.15 -2.39 -0.02 1.99 16 39 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.05 2.05 7.93 -2.39 -0.02 2.03 16 41 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 42 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 43 H 0.05 2.88 6.06 -2.39 -0.01 2.86 16 44 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 45 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -69.61 380.82 1.52 -68.09 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: 0.35 Total: 16.45 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: 6.34 Total: 9.27 kcal Atomic # 7 Polarization: -114.02 SS G_CDS: -5.86 Total: -119.88 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: -0.06 Total: -18.80 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Atomic # 16 Polarization: -1.03 SS G_CDS: -1.27 Total: -2.30 kcal Total: -69.61 1.52 -68.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592770319.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.915 kcal (2) G-P(sol) polarization free energy of solvation -69.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds