Wall clock time and date at job start Tue Mar 31 2020 18:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.76195 * 102.99785 * 2 1 4 4 C 1.39560 * 119.64250 * 180.28071 * 3 2 1 5 5 C 1.38214 * 119.28919 * 180.28018 * 4 3 2 6 6 C 1.38868 * 118.58999 * 359.44800 * 5 4 3 7 7 C 1.39100 * 119.23629 * 0.28280 * 6 5 4 8 8 C 1.48146 * 119.67707 * 179.97438 * 7 6 5 9 9 O 1.21521 * 120.00186 * 359.97438 * 8 7 6 10 10 N 1.34779 * 120.00101 * 180.02562 * 8 7 6 11 11 C 1.46503 * 119.99885 * 179.97438 * 10 8 7 12 12 C 1.53005 * 109.46865 * 179.97438 * 11 10 8 13 13 H 1.09002 * 109.49535 * 55.00090 * 12 11 10 14 14 C 1.53037 * 109.49739 * 175.06708 * 12 11 10 15 15 C 1.53032 * 109.54014 * 181.32016 * 14 12 11 16 16 C 1.53188 * 109.31114 * 298.63285 * 15 14 12 17 17 N 1.46925 * 108.77446 * 54.63545 * 16 15 14 18 18 C 1.36941 * 120.62957 * 126.39218 * 17 16 15 19 19 H 1.08003 * 119.99972 * 207.68137 * 18 17 16 20 20 C 1.38805 * 120.00462 * 27.68071 * 18 17 16 21 21 N 1.31617 * 119.99977 * 17.35582 * 20 18 17 22 22 Si 1.86799 * 120.00296 * 197.36153 * 20 18 17 23 23 H 1.48503 * 109.47201 * 59.99823 * 22 20 18 24 24 H 1.48507 * 109.47248 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47099 * 299.99880 * 22 20 18 26 26 C 1.46928 * 118.76524 * 306.41044 * 17 16 15 27 27 N 1.32121 * 119.64767 * 0.02562 * 3 2 1 28 28 H 1.09004 * 109.47091 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46733 * 299.99729 * 1 2 3 30 30 H 1.08992 * 109.47326 * 59.99645 * 1 2 3 31 31 H 1.08004 * 120.35429 * 0.02562 * 4 3 2 32 32 H 1.07996 * 120.70847 * 179.72799 * 5 4 3 33 33 H 1.08001 * 120.38547 * 180.25432 * 6 5 4 34 34 H 0.97003 * 119.99951 * 359.97438 * 10 8 7 35 35 H 1.09001 * 109.47426 * 300.00104 * 11 10 8 36 36 H 1.08999 * 109.46723 * 60.00304 * 11 10 8 37 37 H 1.09006 * 109.45873 * 301.34433 * 14 12 11 38 38 H 1.08998 * 109.46167 * 61.30970 * 14 12 11 39 39 H 1.08996 * 109.50129 * 58.58419 * 15 14 12 40 40 H 1.09000 * 109.50008 * 178.68252 * 15 14 12 41 41 H 1.09004 * 109.58800 * 174.42087 * 16 15 14 42 42 H 1.09001 * 109.59013 * 294.70473 * 16 15 14 43 43 H 0.97002 * 120.00470 * 179.97438 * 21 20 18 44 44 H 1.08997 * 109.56634 * 293.78526 * 26 17 16 45 45 H 1.09005 * 109.61621 * 173.35788 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 3.5474 2.1166 -0.0059 5 6 3.8500 3.4652 0.0000 6 6 2.8057 4.3805 0.0000 7 6 1.4947 3.9156 0.0000 8 6 0.3732 4.8835 0.0006 9 8 0.6008 6.0772 0.0015 10 7 -0.8996 4.4402 0.0012 11 6 -2.0086 5.3974 0.0023 12 6 -3.3372 4.6386 0.0021 13 1 -3.3606 3.9457 0.8433 14 6 -4.4936 5.6332 0.1274 15 6 -5.8213 4.8729 0.1604 16 6 -5.9923 4.0950 -1.1481 17 7 -4.8132 3.2417 -1.3485 18 6 -4.9541 1.8975 -1.5688 19 1 -4.1662 1.2175 -1.2800 20 6 -6.1094 1.4088 -2.1630 21 7 -6.9080 2.2244 -2.8183 22 14 -6.5308 -0.4064 -2.0327 23 1 -6.6778 -0.7790 -0.6027 24 1 -7.8061 -0.6709 -2.7463 25 1 -5.4441 -1.2121 -2.6451 26 6 -3.4797 3.8573 -1.3078 27 7 1.2385 2.6119 0.0005 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 4.3373 1.3800 -0.0109 32 1 4.8768 3.8000 0.0000 33 1 3.0090 5.4412 0.0004 34 1 -1.0813 3.4873 0.0009 35 1 -1.9474 6.0234 0.8925 36 1 -1.9485 6.0241 -0.8874 37 1 -4.3808 6.2072 1.0471 38 1 -4.4842 6.3103 -0.7267 39 1 -5.8216 4.1776 0.9997 40 1 -6.6429 5.5803 0.2731 41 1 -6.8867 3.4747 -1.0902 42 1 -6.0857 4.7940 -1.9793 43 1 -7.7152 1.8829 -3.2339 44 1 -3.3653 4.5365 -2.1526 45 1 -2.7164 3.0806 -1.3549 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592945073.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:46 Heat of formation + Delta-G solvation = -9.135236 kcal Electronic energy + Delta-G solvation = -26595.114502 eV Core-core repulsion = 22931.017506 eV Total energy + Delta-G solvation = -3664.096997 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.65978 -40.22286 -39.26956 -36.36149 -34.78122 -33.75348 -32.72303 -32.31038 -31.71488 -29.77379 -27.44294 -27.14995 -25.29551 -24.75965 -23.83471 -22.62179 -21.83036 -20.75551 -19.48792 -18.63850 -18.31468 -17.15906 -17.07787 -16.83910 -16.70402 -16.56790 -15.91302 -15.66410 -15.39986 -15.14400 -15.01472 -14.94975 -14.54036 -14.41888 -14.22612 -14.02659 -13.77587 -13.59290 -13.52991 -13.03896 -12.98427 -12.86855 -12.49949 -12.32260 -11.99691 -11.90000 -11.84837 -11.60030 -11.42616 -11.22733 -11.18628 -11.11497 -10.86002 -10.72328 -10.52816 -10.15898 -8.69060 -8.62897 -7.87168 -5.32671 -0.47559 0.03604 0.43135 1.20938 1.46417 1.49043 1.55439 1.58352 2.01535 2.50730 2.68100 3.09706 3.27596 3.56462 3.77867 3.90025 3.95632 3.97390 4.01203 4.04388 4.21146 4.29635 4.33821 4.38965 4.40674 4.53437 4.57660 4.71627 4.84242 4.85531 4.92246 4.95333 4.98618 5.04759 5.08795 5.18662 5.29607 5.33950 5.40973 5.43349 5.55721 5.65748 5.77663 6.21924 6.38357 6.53547 7.01030 7.14508 7.85519 8.37683 9.19106 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.010680 B = 0.003611 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2621.154859 B = 7752.762795 C =10044.998710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 S -0.066 6.066 3 C 0.098 3.902 4 C -0.123 4.123 5 C -0.051 4.051 6 C -0.121 4.121 7 C 0.070 3.930 8 C 0.567 3.433 9 O -0.565 6.565 10 N -0.701 5.701 11 C 0.134 3.866 12 C -0.100 4.100 13 H 0.074 0.926 14 C -0.096 4.096 15 C -0.130 4.130 16 C 0.173 3.827 17 N -0.608 5.608 18 C -0.262 4.262 19 H 0.069 0.931 20 C -0.050 4.050 21 N -0.936 5.936 22 Si 0.965 3.035 23 H -0.277 1.277 24 H -0.296 1.296 25 H -0.274 1.274 26 C 0.155 3.845 27 N -0.483 5.483 28 H 0.121 0.879 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.174 0.826 32 H 0.190 0.810 33 H 0.156 0.844 34 H 0.412 0.588 35 H 0.080 0.920 36 H 0.063 0.937 37 H 0.082 0.918 38 H 0.057 0.943 39 H 0.052 0.948 40 H 0.071 0.929 41 H 0.052 0.948 42 H -0.007 1.007 43 H 0.249 0.751 44 H 0.005 0.995 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.964 0.609 8.997 22.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.301 4.301 2 S 0.173 5.827 3 C -0.153 4.153 4 C -0.148 4.148 5 C -0.078 4.078 6 C -0.145 4.145 7 C -0.070 4.070 8 C 0.353 3.647 9 O -0.444 6.444 10 N -0.351 5.351 11 C 0.010 3.990 12 C -0.121 4.121 13 H 0.092 0.908 14 C -0.134 4.134 15 C -0.169 4.169 16 C 0.047 3.953 17 N -0.331 5.331 18 C -0.393 4.393 19 H 0.086 0.914 20 C -0.245 4.245 21 N -0.582 5.582 22 Si 0.793 3.207 23 H -0.203 1.203 24 H -0.223 1.223 25 H -0.200 1.200 26 C 0.029 3.971 27 N -0.199 5.199 28 H 0.139 0.861 29 H 0.104 0.896 30 H 0.096 0.904 31 H 0.191 0.809 32 H 0.207 0.793 33 H 0.174 0.826 34 H 0.249 0.751 35 H 0.098 0.902 36 H 0.081 0.919 37 H 0.101 0.899 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.089 0.911 41 H 0.071 0.929 42 H 0.011 0.989 43 H 0.058 0.942 44 H 0.023 0.977 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 20.670 0.108 8.900 22.505 hybrid contribution -1.039 0.053 -0.511 1.159 sum 19.631 0.160 8.389 21.349 Atomic orbital electron populations 1.23536 0.92874 1.07437 1.06295 1.85342 1.08583 0.97498 1.91253 1.23498 0.92943 0.98613 1.00270 1.22289 0.95364 0.98280 0.98886 1.21994 1.01301 0.91237 0.93257 1.22304 0.91459 1.03087 0.97664 1.21010 0.93939 0.89945 1.02113 1.18158 0.83043 0.87215 0.76332 1.90747 1.84964 1.16555 1.52125 1.45946 1.05106 1.11733 1.72353 1.21420 0.84003 0.91180 1.02362 1.21718 0.93348 0.97754 0.99258 0.90777 1.21333 0.93182 0.96685 1.02199 1.21997 0.97656 0.98780 0.98458 1.20641 0.90533 0.91616 0.92507 1.44292 1.01067 1.04700 1.83072 1.19483 1.03570 0.83688 1.32509 0.91354 1.25775 0.99804 1.01514 0.97412 1.70192 1.15203 1.35975 1.36827 0.85384 0.77007 0.80576 0.77766 1.20258 1.22266 1.19961 1.20971 0.87226 0.94804 0.94089 1.67832 1.36479 1.01760 1.13872 0.86074 0.89621 0.90411 0.80852 0.79266 0.82645 0.75085 0.90220 0.91901 0.89940 0.92454 0.92889 0.91071 0.92910 0.98918 0.94179 0.97715 0.93206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.72 10.01 113.37 1.14 -1.59 16 2 S -0.07 -1.26 22.55 -56.49 -1.27 -2.53 16 3 C 0.10 2.07 7.00 84.97 0.59 2.66 16 4 C -0.12 -1.79 9.84 22.58 0.22 -1.57 16 5 C -0.05 -0.65 10.16 22.42 0.23 -0.42 16 6 C -0.12 -2.35 9.63 22.63 0.22 -2.14 16 7 C 0.07 1.79 6.74 41.83 0.28 2.08 16 8 C 0.57 16.92 7.81 86.88 0.68 17.60 16 9 O -0.56 -19.21 16.31 -3.78 -0.06 -19.27 16 10 N -0.70 -20.26 5.32 -465.66 -2.48 -22.73 16 11 C 0.13 3.84 5.07 86.38 0.44 4.28 16 12 C -0.10 -3.22 2.37 -10.72 -0.03 -3.24 16 13 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 14 C -0.10 -2.95 5.17 30.62 0.16 -2.79 16 15 C -0.13 -4.73 6.08 30.67 0.19 -4.54 16 16 C 0.17 8.32 5.31 86.36 0.46 8.78 16 17 N -0.61 -30.26 3.00 -699.10 -2.09 -32.36 16 18 C -0.26 -14.23 9.58 84.03 0.81 -13.43 16 19 H 0.07 3.56 7.89 -2.91 -0.02 3.54 16 20 C -0.05 -2.76 4.91 84.86 0.42 -2.34 16 21 N -0.94 -55.50 11.19 21.65 0.24 -55.25 16 22 Si 0.96 44.29 29.59 68.60 2.03 46.32 16 23 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 24 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 25 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 26 C 0.15 6.33 5.60 86.36 0.48 6.82 16 27 N -0.48 -12.19 8.60 -181.33 -1.56 -13.75 16 28 H 0.12 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.17 1.47 8.06 -2.91 -0.02 1.44 16 32 H 0.19 0.76 8.06 -2.91 -0.02 0.74 16 33 H 0.16 2.79 7.63 -2.91 -0.02 2.77 16 34 H 0.41 11.82 7.03 -92.71 -0.65 11.17 16 35 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.08 2.05 8.14 -2.38 -0.02 2.03 16 38 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 41 H 0.05 2.89 6.04 -2.38 -0.01 2.87 16 42 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 43 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 44 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 45 H 0.05 2.00 7.14 -2.38 -0.02 1.98 16 Total: -1.00 -68.93 381.01 1.43 -67.50 By element: Atomic # 1 Polarization: 21.57 SS G_CDS: 0.34 Total: 21.92 kcal Atomic # 6 Polarization: 3.88 SS G_CDS: 6.28 Total: 10.16 kcal Atomic # 7 Polarization: -118.20 SS G_CDS: -5.89 Total: -124.09 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: -0.06 Total: -19.27 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Atomic # 16 Polarization: -1.26 SS G_CDS: -1.27 Total: -2.53 kcal Total: -68.93 1.43 -67.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592945073.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.365 kcal (2) G-P(sol) polarization free energy of solvation -68.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds