Wall clock time and date at job start Tue Mar 31 2020 18:06:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81393 * 1 3 3 C 1.76202 * 103.00507 * 2 1 4 4 C 1.39546 * 119.64590 * 180.02562 * 3 2 1 5 5 C 1.38220 * 119.28991 * 179.97438 * 4 3 2 6 6 C 1.38862 * 118.58719 * 0.02562 * 5 4 3 7 7 C 1.39100 * 119.24157 * 359.97438 * 6 5 4 8 8 C 1.48151 * 119.68052 * 179.97438 * 7 6 5 9 9 O 1.21522 * 119.99638 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00248 * 179.97438 * 8 7 6 11 11 C 1.46498 * 120.00336 * 180.02562 * 10 8 7 12 12 C 1.52996 * 109.47270 * 180.02562 * 11 10 8 13 13 H 1.08999 * 109.52500 * 305.07746 * 12 11 10 14 14 C 1.53039 * 109.49695 * 184.99585 * 12 11 10 15 15 C 1.53045 * 109.53823 * 178.68454 * 14 12 11 16 16 C 1.53190 * 109.31268 * 61.36420 * 15 14 12 17 17 N 1.46922 * 108.77625 * 305.36643 * 16 15 14 18 18 C 1.36943 * 120.63253 * 233.58592 * 17 16 15 19 19 H 1.07990 * 120.00256 * 152.29272 * 18 17 16 20 20 C 1.38815 * 119.99581 * 332.29987 * 18 17 16 21 21 N 1.31620 * 120.00321 * 342.60833 * 20 18 17 22 22 Si 1.86797 * 120.00011 * 162.60927 * 20 18 17 23 23 H 1.48498 * 109.47121 * 94.34418 * 22 20 18 24 24 H 1.48494 * 109.47249 * 214.34635 * 22 20 18 25 25 H 1.48498 * 109.46937 * 334.34891 * 22 20 18 26 26 C 1.46922 * 118.73992 * 53.86210 * 17 16 15 27 27 N 1.32124 * 119.63808 * 0.25174 * 3 2 1 28 28 H 1.09000 * 109.47515 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.46992 * 300.00302 * 1 2 3 30 30 H 1.08997 * 109.46928 * 59.99817 * 1 2 3 31 31 H 1.07997 * 120.35561 * 359.97438 * 4 3 2 32 32 H 1.08000 * 120.70884 * 180.02562 * 5 4 3 33 33 H 1.08004 * 120.38053 * 179.97438 * 6 5 4 34 34 H 0.97008 * 119.99966 * 359.97438 * 10 8 7 35 35 H 1.08997 * 109.47061 * 59.99821 * 11 10 8 36 36 H 1.09008 * 109.46594 * 299.99807 * 11 10 8 37 37 H 1.08998 * 109.45900 * 58.66537 * 14 12 11 38 38 H 1.08997 * 109.45267 * 298.69435 * 14 12 11 39 39 H 1.09000 * 109.49357 * 301.41438 * 15 14 12 40 40 H 1.09006 * 109.52292 * 181.33825 * 15 14 12 41 41 H 1.09003 * 109.58516 * 185.58004 * 16 15 14 42 42 H 1.09000 * 109.70365 * 65.22328 * 16 15 14 43 43 H 0.96992 * 120.00549 * 180.02562 * 21 20 18 44 44 H 1.09000 * 109.58597 * 65.92672 * 26 17 16 45 45 H 1.08999 * 109.59027 * 186.35116 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2105 1.7168 0.0000 4 6 3.5475 2.1164 -0.0005 5 6 3.8501 3.4651 -0.0011 6 6 2.8059 4.3804 -0.0005 7 6 1.4949 3.9156 0.0000 8 6 0.3733 4.8836 0.0012 9 8 0.6011 6.0773 0.0012 10 7 -0.8994 4.4404 0.0012 11 6 -2.0085 5.3975 0.0018 12 6 -3.3370 4.6388 0.0023 13 1 -3.3610 3.9456 -0.8385 14 6 -4.4934 5.6335 -0.1227 15 6 -5.8212 4.8732 -0.1552 16 6 -5.9919 4.0954 1.1534 17 7 -4.8128 3.2420 1.3535 18 6 -4.9536 1.8979 1.5743 19 1 -4.1662 1.2177 1.2852 20 6 -6.1086 1.4096 2.1698 21 7 -6.9062 2.2255 2.8259 22 14 -6.5309 -0.4053 2.0398 23 1 -6.0196 -1.1195 3.2372 24 1 -8.0049 -0.5660 1.9595 25 1 -5.9038 -0.9733 0.8194 26 6 -3.4799 3.8592 1.3184 27 7 1.2386 2.6119 0.0050 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 4.3373 1.3799 -0.0005 32 1 4.8769 3.7999 -0.0019 33 1 3.0093 5.4411 -0.0005 34 1 -1.0812 3.4875 0.0001 35 1 -1.9479 6.0243 -0.8879 36 1 -1.9476 6.0235 0.8922 37 1 -4.3808 6.2073 -1.0425 38 1 -4.4836 6.3106 0.7314 39 1 -5.8217 4.1778 -0.9946 40 1 -6.6431 5.5803 -0.2682 41 1 -6.8863 3.4750 1.0957 42 1 -6.0839 4.7927 1.9861 43 1 -7.7130 1.8843 3.2423 44 1 -3.3698 4.5393 2.1630 45 1 -2.7163 3.0831 1.3697 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592945074.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:49 Heat of formation + Delta-G solvation = -9.211939 kcal Electronic energy + Delta-G solvation = -26593.442991 eV Core-core repulsion = 22929.342669 eV Total energy + Delta-G solvation = -3664.100323 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.65810 -40.21577 -39.25734 -36.35899 -34.77901 -33.75238 -32.72150 -32.30892 -31.70278 -29.77345 -27.43876 -27.15026 -25.29496 -24.75842 -23.82537 -22.61871 -21.83095 -20.75999 -19.48530 -18.63898 -18.31364 -17.15812 -17.07662 -16.83628 -16.70176 -16.56898 -15.91051 -15.65896 -15.39825 -15.14675 -15.01394 -14.94900 -14.53805 -14.41748 -14.22543 -14.02596 -13.77199 -13.59315 -13.52950 -13.02379 -12.98351 -12.89784 -12.51811 -12.28274 -11.98922 -11.89928 -11.85382 -11.60178 -11.42687 -11.22556 -11.18564 -11.10824 -10.85941 -10.72276 -10.53585 -10.15728 -8.68735 -8.62833 -7.87330 -5.32863 -0.47491 0.03669 0.43169 1.21044 1.45743 1.47698 1.57233 1.58441 2.01657 2.50599 2.68165 3.09796 3.27631 3.56856 3.77941 3.90108 3.95819 3.97078 4.01290 4.04829 4.21206 4.29684 4.33897 4.39159 4.40742 4.53045 4.57732 4.71942 4.84094 4.85658 4.92276 4.95428 4.98715 5.04829 5.08921 5.18749 5.29734 5.34014 5.41172 5.43465 5.55978 5.65964 5.77779 6.22041 6.38454 6.53638 7.01151 7.14442 7.85434 8.37726 9.18975 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.010680 B = 0.003610 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2621.099967 B = 7754.770541 C =10046.333535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 S -0.066 6.066 3 C 0.098 3.902 4 C -0.123 4.123 5 C -0.051 4.051 6 C -0.121 4.121 7 C 0.070 3.930 8 C 0.567 3.433 9 O -0.565 6.565 10 N -0.701 5.701 11 C 0.134 3.866 12 C -0.100 4.100 13 H 0.074 0.926 14 C -0.096 4.096 15 C -0.130 4.130 16 C 0.173 3.827 17 N -0.608 5.608 18 C -0.261 4.261 19 H 0.069 0.931 20 C -0.050 4.050 21 N -0.936 5.936 22 Si 0.964 3.036 23 H -0.287 1.287 24 H -0.294 1.294 25 H -0.266 1.266 26 C 0.154 3.846 27 N -0.483 5.483 28 H 0.121 0.879 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.174 0.826 32 H 0.190 0.810 33 H 0.156 0.844 34 H 0.412 0.588 35 H 0.079 0.921 36 H 0.063 0.937 37 H 0.082 0.918 38 H 0.057 0.943 39 H 0.053 0.947 40 H 0.071 0.929 41 H 0.052 0.948 42 H -0.007 1.007 43 H 0.249 0.751 44 H 0.005 0.995 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.956 0.619 -9.092 22.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.301 4.301 2 S 0.173 5.827 3 C -0.153 4.153 4 C -0.148 4.148 5 C -0.078 4.078 6 C -0.145 4.145 7 C -0.070 4.070 8 C 0.352 3.648 9 O -0.444 6.444 10 N -0.351 5.351 11 C 0.010 3.990 12 C -0.121 4.121 13 H 0.093 0.907 14 C -0.134 4.134 15 C -0.169 4.169 16 C 0.047 3.953 17 N -0.331 5.331 18 C -0.391 4.391 19 H 0.086 0.914 20 C -0.245 4.245 21 N -0.582 5.582 22 Si 0.792 3.208 23 H -0.214 1.214 24 H -0.220 1.220 25 H -0.190 1.190 26 C 0.029 3.971 27 N -0.199 5.199 28 H 0.139 0.861 29 H 0.096 0.904 30 H 0.104 0.896 31 H 0.191 0.809 32 H 0.207 0.793 33 H 0.174 0.826 34 H 0.249 0.751 35 H 0.098 0.902 36 H 0.081 0.919 37 H 0.101 0.899 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.089 0.911 41 H 0.071 0.929 42 H 0.011 0.989 43 H 0.058 0.942 44 H 0.023 0.977 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 20.663 0.117 -9.002 22.539 hybrid contribution -1.048 0.056 0.546 1.183 sum 19.615 0.173 -8.456 21.361 Atomic orbital electron populations 1.23534 0.92876 1.07434 1.06296 1.85341 1.08578 0.97502 1.91256 1.23496 0.92944 0.98613 1.00271 1.22285 0.95364 0.98280 0.98890 1.21995 1.01301 0.91237 0.93255 1.22303 0.91460 1.03087 0.97670 1.21013 0.93939 0.89946 1.02104 1.18157 0.83045 0.87214 0.76335 1.90748 1.84961 1.16561 1.52131 1.45943 1.05103 1.11735 1.72341 1.21420 0.84029 0.91187 1.02348 1.21794 0.93305 0.97746 0.99206 0.90748 1.21335 0.93195 0.96687 1.02186 1.21995 0.97641 0.98779 0.98438 1.20644 0.90524 0.91619 0.92514 1.44318 1.01117 1.04672 1.83037 1.19514 1.03557 0.83688 1.32365 0.91353 1.25781 0.99838 1.01484 0.97445 1.70196 1.15274 1.35883 1.36848 0.85316 0.76811 0.80586 0.78096 1.21393 1.22039 1.19047 1.21064 0.87247 0.94787 0.94034 1.67837 1.36477 1.01760 1.13867 0.86077 0.90389 0.89645 0.80853 0.79265 0.82648 0.75084 0.90236 0.91910 0.89946 0.92468 0.92854 0.91078 0.92925 0.98933 0.94189 0.97681 0.93202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.72 10.01 113.37 1.14 -1.59 16 2 S -0.07 -1.26 22.55 -56.49 -1.27 -2.53 16 3 C 0.10 2.07 7.00 84.96 0.59 2.66 16 4 C -0.12 -1.79 9.84 22.58 0.22 -1.57 16 5 C -0.05 -0.65 10.16 22.41 0.23 -0.42 16 6 C -0.12 -2.35 9.63 22.63 0.22 -2.14 16 7 C 0.07 1.80 6.74 41.83 0.28 2.08 16 8 C 0.57 16.92 7.81 86.88 0.68 17.60 16 9 O -0.56 -19.22 16.31 -3.79 -0.06 -19.28 16 10 N -0.70 -20.24 5.32 -465.68 -2.48 -22.72 16 11 C 0.13 3.83 5.06 86.38 0.44 4.27 16 12 C -0.10 -3.20 2.39 -10.57 -0.03 -3.23 16 13 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 14 C -0.10 -2.95 5.16 30.62 0.16 -2.79 16 15 C -0.13 -4.70 6.08 30.67 0.19 -4.52 16 16 C 0.17 8.31 5.31 86.36 0.46 8.77 16 17 N -0.61 -30.24 2.99 -698.27 -2.09 -32.33 16 18 C -0.26 -14.15 9.58 84.03 0.81 -13.35 16 19 H 0.07 3.56 7.89 -2.92 -0.02 3.54 16 20 C -0.05 -2.78 4.91 84.86 0.42 -2.37 16 21 N -0.94 -55.47 11.19 21.65 0.24 -55.23 16 22 Si 0.96 44.28 29.59 68.60 2.03 46.31 16 23 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 24 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 25 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 26 C 0.15 6.31 5.63 86.51 0.49 6.80 16 27 N -0.48 -12.18 8.60 -181.33 -1.56 -13.74 16 28 H 0.12 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.17 1.46 8.06 -2.91 -0.02 1.44 16 32 H 0.19 0.76 8.06 -2.91 -0.02 0.74 16 33 H 0.16 2.79 7.63 -2.91 -0.02 2.77 16 34 H 0.41 11.81 7.05 -92.70 -0.65 11.16 16 35 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 37 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 38 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 41 H 0.05 2.88 6.04 -2.39 -0.01 2.86 16 42 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 43 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 44 H 0.01 0.23 8.14 -2.39 -0.02 0.21 16 45 H 0.05 2.00 7.16 -2.39 -0.02 1.98 16 Total: -1.00 -68.96 381.09 1.43 -67.53 By element: Atomic # 1 Polarization: 21.44 SS G_CDS: 0.34 Total: 21.78 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: 6.28 Total: 10.21 kcal Atomic # 7 Polarization: -118.14 SS G_CDS: -5.88 Total: -124.02 kcal Atomic # 8 Polarization: -19.22 SS G_CDS: -0.06 Total: -19.28 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Atomic # 16 Polarization: -1.26 SS G_CDS: -1.27 Total: -2.53 kcal Total: -68.96 1.43 -67.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592945074.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.316 kcal (2) G-P(sol) polarization free energy of solvation -68.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds