Wall clock time and date at job start Tue Mar 31 2020 18:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99946 * 2 1 4 4 H 1.48505 * 109.47324 * 269.99981 * 3 2 1 5 5 H 1.48506 * 109.47435 * 30.00096 * 3 2 1 6 6 H 1.48498 * 109.47218 * 150.00017 * 3 2 1 7 7 C 1.37874 * 120.00360 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00529 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99686 * 0.02562 * 7 2 1 10 10 H 1.09008 * 109.49891 * 299.93200 * 9 7 2 11 11 C 1.53042 * 109.52514 * 179.85242 * 9 7 2 12 12 C 1.53040 * 109.53764 * 178.66602 * 11 9 7 13 13 C 1.52755 * 109.38491 * 61.24064 * 12 11 9 14 14 N 1.46932 * 109.01056 * 305.58900 * 13 12 11 15 15 C 1.34772 * 120.62720 * 233.58178 * 14 13 12 16 16 O 1.21287 * 119.99492 * 179.71265 * 15 14 13 17 17 C 1.50694 * 120.00555 * 359.71950 * 15 14 13 18 18 N 1.46496 * 109.47452 * 179.97438 * 17 15 14 19 19 C 1.34775 * 120.00372 * 179.97438 * 18 17 15 20 20 O 1.21591 * 119.99561 * 0.02562 * 19 18 17 21 21 N 1.34775 * 120.00344 * 179.97438 * 19 18 17 22 22 C 1.46502 * 120.00055 * 180.02562 * 21 19 18 23 23 C 1.50703 * 109.47054 * 180.02562 * 22 21 19 24 24 C 1.34507 * 125.78834 * 89.71223 * 23 22 21 25 25 C 1.41386 * 106.84010 * 180.26118 * 24 23 22 26 26 C 1.34511 * 106.84141 * 0.02562 * 25 24 23 27 27 O 1.34304 * 125.78797 * 270.02402 * 23 22 21 28 28 C 1.46926 * 118.73484 * 53.30598 * 14 13 12 29 29 H 0.97006 * 120.00024 * 0.02562 * 1 2 3 30 30 H 1.08993 * 109.45825 * 298.68968 * 11 9 7 31 31 H 1.09001 * 109.45471 * 58.66181 * 11 9 7 32 32 H 1.08999 * 109.49619 * 181.32058 * 12 11 9 33 33 H 1.09004 * 109.49741 * 301.41201 * 12 11 9 34 34 H 1.09000 * 109.51228 * 185.70347 * 13 12 11 35 35 H 1.09005 * 109.43228 * 65.42202 * 13 12 11 36 36 H 1.08999 * 109.47353 * 59.99499 * 17 15 14 37 37 H 1.09000 * 109.47129 * 300.00049 * 17 15 14 38 38 H 0.97001 * 119.99670 * 359.97438 * 18 17 15 39 39 H 0.97001 * 119.99698 * 0.02562 * 21 19 18 40 40 H 1.09000 * 109.47474 * 60.00246 * 22 21 19 41 41 H 1.09004 * 109.47079 * 300.00224 * 22 21 19 42 42 H 1.08004 * 126.58507 * 0.26980 * 24 23 22 43 43 H 1.08000 * 126.57862 * 179.97438 * 25 24 23 44 44 H 1.08000 * 125.79502 * 180.02562 * 26 25 24 45 45 H 1.09001 * 109.58841 * 66.43694 * 28 14 13 46 46 H 1.09005 * 109.58091 * 186.71535 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6528 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6248 -2.5576 0.8908 11 6 2.2445 -3.6633 -0.0025 12 6 1.4800 -4.9886 0.0310 13 6 0.6015 -5.0989 -1.2138 14 7 -0.2562 -3.9091 -1.3013 15 6 -1.5929 -4.0335 -1.4203 16 8 -2.2905 -3.0436 -1.4863 17 6 -2.2207 -5.4025 -1.4711 18 7 -3.6738 -5.2689 -1.6008 19 6 -4.4486 -6.3697 -1.6662 20 8 -3.9415 -7.4738 -1.6171 21 7 -5.7855 -6.2468 -1.7851 22 6 -6.6277 -7.4434 -1.8556 23 6 -8.0722 -7.0341 -1.9856 24 6 -8.7280 -6.8191 -3.1402 25 6 -10.0494 -6.4504 -2.7982 26 6 -10.1219 -6.4616 -1.4550 27 8 -8.9214 -6.8163 -0.9682 28 6 0.3706 -2.5812 -1.2504 29 1 -0.4850 0.8401 -0.0004 30 1 2.8538 -3.6182 -0.9051 31 1 2.8884 -3.5934 0.8742 32 1 2.1883 -5.8167 0.0525 33 1 0.8516 -5.0236 0.9210 34 1 -0.0189 -5.9923 -1.1436 35 1 1.2339 -5.1593 -2.0996 36 1 -1.9864 -5.9440 -0.5546 37 1 -1.8280 -5.9508 -2.3274 38 1 -4.0782 -4.3881 -1.6397 39 1 -6.1899 -5.3660 -1.8239 40 1 -6.4972 -8.0336 -0.9486 41 1 -6.3400 -8.0397 -2.7216 42 1 -8.3230 -6.9107 -4.1372 43 1 -10.8473 -6.2059 -3.4837 44 1 -10.9971 -6.2264 -0.8677 45 1 0.9836 -2.4321 -2.1392 46 1 -0.4024 -1.8138 -1.2068 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597912957.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:30 Heat of formation + Delta-G solvation = -48.652367 kcal Electronic energy + Delta-G solvation = -28212.762871 eV Core-core repulsion = 24104.199412 eV Total energy + Delta-G solvation = -4108.563459 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.95402 -40.23804 -39.31051 -36.90562 -35.33756 -34.29904 -33.45608 -33.31957 -31.86851 -30.81482 -29.91988 -27.94101 -25.85421 -25.05576 -24.01021 -22.13664 -21.86835 -21.04106 -20.96227 -19.95791 -19.05793 -18.27251 -17.63786 -16.75057 -16.53692 -16.19048 -15.98253 -15.88033 -15.16473 -15.04285 -14.77487 -14.54184 -14.12138 -13.83712 -13.75282 -13.63811 -13.23720 -13.20991 -13.01233 -12.76186 -12.63335 -12.46638 -12.28665 -11.98415 -11.85499 -11.03965 -10.93391 -10.54808 -10.45567 -10.42052 -10.29354 -10.27547 -9.93953 -9.47717 -9.44156 -9.15953 -8.97546 -8.95928 -8.94023 -8.47776 -7.84572 -6.03530 -4.12134 1.19570 2.14297 2.49853 2.76393 3.02893 3.14589 3.28470 3.36018 3.38254 3.63611 4.20022 4.24031 4.39975 4.63682 4.66951 4.78025 5.03457 5.19351 5.25262 5.27946 5.41172 5.42033 5.45882 5.52036 5.55125 5.65517 5.67963 5.95643 6.07844 6.13100 6.15809 6.28095 6.35116 6.57476 6.62299 6.73588 6.76433 6.82361 6.93378 7.08045 7.19252 7.58826 7.82391 7.89536 7.94838 8.14258 8.34136 8.48024 8.68097 8.92070 9.53687 11.01766 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.017649 B = 0.002102 C = 0.001924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.088552 B =13315.476764 C =14553.275372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.062 3.938 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.059 0.941 9 C 0.039 3.961 10 H 0.029 0.971 11 C -0.111 4.111 12 C -0.135 4.135 13 C 0.105 3.895 14 N -0.599 5.599 15 C 0.500 3.500 16 O -0.538 6.538 17 C 0.120 3.880 18 N -0.729 5.729 19 C 0.711 3.289 20 O -0.594 6.594 21 N -0.746 5.746 22 C 0.224 3.776 23 C -0.037 4.037 24 C -0.183 4.183 25 C -0.219 4.219 26 C -0.029 4.029 27 O -0.171 6.171 28 C 0.112 3.888 29 H 0.263 0.737 30 H 0.050 0.950 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.409 0.591 39 H 0.401 0.599 40 H 0.084 0.916 41 H 0.099 0.901 42 H 0.151 0.849 43 H 0.150 0.850 44 H 0.205 0.795 45 H 0.044 0.956 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.275 -14.984 -5.230 22.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.141 4.141 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.559 4.559 8 H 0.077 0.923 9 C 0.020 3.980 10 H 0.047 0.953 11 C -0.149 4.149 12 C -0.173 4.173 13 C -0.019 4.019 14 N -0.332 5.332 15 C 0.286 3.714 16 O -0.415 6.415 17 C -0.008 4.008 18 N -0.387 5.387 19 C 0.410 3.590 20 O -0.473 6.473 21 N -0.403 5.403 22 C 0.100 3.900 23 C -0.087 4.087 24 C -0.203 4.203 25 C -0.238 4.238 26 C -0.098 4.098 27 O -0.066 6.066 28 C -0.008 4.008 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.092 0.908 35 H 0.084 0.916 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.247 0.753 39 H 0.236 0.764 40 H 0.103 0.897 41 H 0.117 0.883 42 H 0.169 0.831 43 H 0.168 0.832 44 H 0.221 0.779 45 H 0.062 0.938 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -15.207 -15.367 -4.910 22.170 hybrid contribution -0.082 1.768 -0.244 1.787 sum -15.288 -13.599 -5.154 21.100 Atomic orbital electron populations 1.69882 1.05744 1.26847 1.49388 1.25057 0.94902 0.99303 0.94818 0.86582 0.79812 0.83418 0.78121 1.20637 1.21211 1.19920 1.21078 0.92940 0.90082 1.51792 0.92313 1.18977 0.92653 0.92385 0.93955 0.95283 1.21630 0.98564 0.94007 1.00682 1.21875 0.98690 0.99241 0.97485 1.21644 0.93790 0.87534 0.98923 1.48465 1.04966 1.09392 1.70344 1.20298 0.83102 0.90323 0.77700 1.90699 1.61013 1.39162 1.50666 1.20995 0.79831 0.96084 1.03909 1.44777 1.06414 1.08733 1.78766 1.15705 0.80872 0.84521 0.77859 1.90928 1.73240 1.24730 1.58394 1.45083 1.04982 1.09636 1.80638 1.19366 0.79411 0.86789 1.04417 1.22334 0.93148 1.07505 0.85720 1.21742 0.94397 1.05137 0.99052 1.21899 0.98335 1.07931 0.95630 1.24159 0.87528 1.03373 0.94716 1.84062 1.19731 1.66719 1.36104 1.22350 0.98732 0.81002 0.98712 0.92657 0.93108 0.92929 0.91943 0.92066 0.90842 0.91619 0.88856 0.88949 0.75332 0.76446 0.89736 0.88324 0.83078 0.83199 0.77874 0.93778 0.85864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.21 11.39 55.43 0.63 -24.58 16 2 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 3 Si 0.89 20.98 29.54 -169.99 -5.02 15.95 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.52 -13.82 8.57 -34.44 -0.29 -14.11 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.04 0.95 2.25 -91.65 -0.21 0.74 16 10 H 0.03 0.78 8.14 -51.92 -0.42 0.36 16 11 C -0.11 -2.14 5.11 -26.69 -0.14 -2.27 16 12 C -0.13 -2.08 6.06 -26.84 -0.16 -2.24 16 13 C 0.10 1.54 6.31 -3.93 -0.02 1.52 16 14 N -0.60 -11.36 2.98 -173.03 -0.52 -11.87 16 15 C 0.50 9.31 7.77 -10.99 -0.09 9.22 16 16 O -0.54 -11.97 15.08 5.55 0.08 -11.89 16 17 C 0.12 1.75 4.50 -5.20 -0.02 1.72 16 18 N -0.73 -10.13 5.53 -66.42 -0.37 -10.50 16 19 C 0.71 9.72 8.57 -86.92 -0.74 8.98 16 20 O -0.59 -9.83 16.34 5.29 0.09 -9.74 16 21 N -0.75 -7.80 5.55 -66.41 -0.37 -8.16 16 22 C 0.22 2.06 6.20 -5.19 -0.03 2.02 16 23 C -0.04 -0.33 6.69 -35.63 -0.24 -0.56 16 24 C -0.18 -1.46 10.81 -39.70 -0.43 -1.89 16 25 C -0.22 -1.56 10.91 -39.70 -0.43 -1.99 16 26 C -0.03 -0.20 12.09 29.41 0.36 0.15 16 27 O -0.17 -1.60 10.65 5.70 0.06 -1.54 16 28 C 0.11 2.61 5.40 -3.71 -0.02 2.59 16 29 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 30 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.07 0.88 5.93 -51.93 -0.31 0.57 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.09 1.30 7.68 -51.93 -0.40 0.90 16 37 H 0.09 1.22 7.95 -51.93 -0.41 0.81 16 38 H 0.41 5.63 7.45 -40.82 -0.30 5.33 16 39 H 0.40 3.61 8.48 -40.82 -0.35 3.27 16 40 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 42 H 0.15 0.99 8.06 -52.48 -0.42 0.57 16 43 H 0.15 0.76 8.06 -52.49 -0.42 0.34 16 44 H 0.20 0.67 8.06 -52.49 -0.42 0.25 16 45 H 0.04 1.03 8.14 -51.93 -0.42 0.60 16 46 H 0.12 3.37 5.13 -51.93 -0.27 3.10 16 LS Contribution 381.05 15.07 5.74 5.74 Total: -1.00 -33.19 381.05 -8.89 -42.08 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -6.65 Total: 9.05 kcal Atomic # 6 Polarization: 8.03 SS G_CDS: -2.57 Total: 5.46 kcal Atomic # 7 Polarization: -54.49 SS G_CDS: -0.62 Total: -55.11 kcal Atomic # 8 Polarization: -23.40 SS G_CDS: 0.23 Total: -23.17 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.19 -8.89 -42.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597912957.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.576 kcal (2) G-P(sol) polarization free energy of solvation -33.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds