Wall clock time and date at job start Tue Mar 31 2020 18:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99946 * 2 1 4 4 H 1.48505 * 109.47324 * 269.99981 * 3 2 1 5 5 H 1.48506 * 109.47435 * 30.00096 * 3 2 1 6 6 H 1.48498 * 109.47218 * 150.00017 * 3 2 1 7 7 C 1.37874 * 120.00360 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00529 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99686 * 0.02562 * 7 2 1 10 10 H 1.09008 * 109.49891 * 299.93200 * 9 7 2 11 11 C 1.53042 * 109.52514 * 179.85242 * 9 7 2 12 12 C 1.53040 * 109.53764 * 178.66602 * 11 9 7 13 13 C 1.52755 * 109.38491 * 61.24064 * 12 11 9 14 14 N 1.46932 * 109.01056 * 305.58900 * 13 12 11 15 15 C 1.34772 * 120.62720 * 233.58178 * 14 13 12 16 16 O 1.21287 * 119.99492 * 179.71265 * 15 14 13 17 17 C 1.50694 * 120.00555 * 359.71950 * 15 14 13 18 18 N 1.46496 * 109.47452 * 179.97438 * 17 15 14 19 19 C 1.34775 * 120.00372 * 179.97438 * 18 17 15 20 20 O 1.21591 * 119.99561 * 0.02562 * 19 18 17 21 21 N 1.34775 * 120.00344 * 179.97438 * 19 18 17 22 22 C 1.46502 * 120.00055 * 180.02562 * 21 19 18 23 23 C 1.50703 * 109.47054 * 180.02562 * 22 21 19 24 24 C 1.34507 * 125.78834 * 89.71223 * 23 22 21 25 25 C 1.41386 * 106.84010 * 180.26118 * 24 23 22 26 26 C 1.34511 * 106.84141 * 0.02562 * 25 24 23 27 27 O 1.34304 * 125.78797 * 270.02402 * 23 22 21 28 28 C 1.46926 * 118.73484 * 53.30598 * 14 13 12 29 29 H 0.97006 * 120.00024 * 0.02562 * 1 2 3 30 30 H 1.08993 * 109.45825 * 298.68968 * 11 9 7 31 31 H 1.09001 * 109.45471 * 58.66181 * 11 9 7 32 32 H 1.08999 * 109.49619 * 181.32058 * 12 11 9 33 33 H 1.09004 * 109.49741 * 301.41201 * 12 11 9 34 34 H 1.09000 * 109.51228 * 185.70347 * 13 12 11 35 35 H 1.09005 * 109.43228 * 65.42202 * 13 12 11 36 36 H 1.08999 * 109.47353 * 59.99499 * 17 15 14 37 37 H 1.09000 * 109.47129 * 300.00049 * 17 15 14 38 38 H 0.97001 * 119.99670 * 359.97438 * 18 17 15 39 39 H 0.97001 * 119.99698 * 0.02562 * 21 19 18 40 40 H 1.09000 * 109.47474 * 60.00246 * 22 21 19 41 41 H 1.09004 * 109.47079 * 300.00224 * 22 21 19 42 42 H 1.08004 * 126.58507 * 0.26980 * 24 23 22 43 43 H 1.08000 * 126.57862 * 179.97438 * 25 24 23 44 44 H 1.08000 * 125.79502 * 180.02562 * 26 25 24 45 45 H 1.09001 * 109.58841 * 66.43694 * 28 14 13 46 46 H 1.09005 * 109.58091 * 186.71535 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6528 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6248 -2.5576 0.8908 11 6 2.2445 -3.6633 -0.0025 12 6 1.4800 -4.9886 0.0310 13 6 0.6015 -5.0989 -1.2138 14 7 -0.2562 -3.9091 -1.3013 15 6 -1.5929 -4.0335 -1.4203 16 8 -2.2905 -3.0436 -1.4863 17 6 -2.2207 -5.4025 -1.4711 18 7 -3.6738 -5.2689 -1.6008 19 6 -4.4486 -6.3697 -1.6662 20 8 -3.9415 -7.4738 -1.6171 21 7 -5.7855 -6.2468 -1.7851 22 6 -6.6277 -7.4434 -1.8556 23 6 -8.0722 -7.0341 -1.9856 24 6 -8.7280 -6.8191 -3.1402 25 6 -10.0494 -6.4504 -2.7982 26 6 -10.1219 -6.4616 -1.4550 27 8 -8.9214 -6.8163 -0.9682 28 6 0.3706 -2.5812 -1.2504 29 1 -0.4850 0.8401 -0.0004 30 1 2.8538 -3.6182 -0.9051 31 1 2.8884 -3.5934 0.8742 32 1 2.1883 -5.8167 0.0525 33 1 0.8516 -5.0236 0.9210 34 1 -0.0189 -5.9923 -1.1436 35 1 1.2339 -5.1593 -2.0996 36 1 -1.9864 -5.9440 -0.5546 37 1 -1.8280 -5.9508 -2.3274 38 1 -4.0782 -4.3881 -1.6397 39 1 -6.1899 -5.3660 -1.8239 40 1 -6.4972 -8.0336 -0.9486 41 1 -6.3400 -8.0397 -2.7216 42 1 -8.3230 -6.9107 -4.1372 43 1 -10.8473 -6.2059 -3.4837 44 1 -10.9971 -6.2264 -0.8677 45 1 0.9836 -2.4321 -2.1392 46 1 -0.4024 -1.8138 -1.2068 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597912957.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:30 Heat of formation + Delta-G solvation = -72.313699 kcal Electronic energy + Delta-G solvation = -28213.788903 eV Core-core repulsion = 24104.199412 eV Total energy + Delta-G solvation = -4109.589491 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.54754 -41.47696 -40.64468 -38.45563 -36.25890 -35.51637 -35.27803 -33.92657 -33.50492 -31.78197 -31.38652 -29.14489 -27.02910 -26.59579 -25.46364 -23.43325 -22.71198 -22.10378 -21.61464 -21.47533 -20.24022 -19.55058 -18.59445 -18.25517 -17.77563 -17.33510 -17.09564 -17.02611 -16.59284 -16.29162 -16.18875 -15.64425 -15.23513 -15.11909 -15.02410 -14.80713 -14.49521 -14.40472 -14.05409 -13.92259 -13.76863 -13.54059 -13.51288 -13.37597 -12.95295 -12.88555 -12.67644 -12.28359 -12.23808 -11.79645 -11.63040 -11.57606 -11.15066 -10.94821 -10.89681 -10.69613 -10.51887 -10.51053 -9.95179 -9.55594 -9.44201 -8.11178 -6.27439 0.56126 1.40428 1.41593 1.46164 1.52021 1.59489 1.75330 2.01833 2.06470 2.28155 2.42701 3.17035 3.25063 3.46599 3.61748 4.06961 4.10500 4.14641 4.18769 4.29804 4.34059 4.36037 4.38841 4.51330 4.62681 4.75602 4.82078 4.87546 4.88398 4.99885 5.12182 5.13579 5.20706 5.27135 5.28650 5.31042 5.37839 5.54004 5.56052 5.62198 5.82118 5.91256 6.00224 6.15841 6.33327 6.58959 6.84972 6.89476 7.19610 7.42176 7.42587 8.92175 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.017649 B = 0.002102 C = 0.001924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.088552 B =13315.476764 C =14553.275372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.010 3.990 3 Si 0.956 3.044 4 H -0.275 1.275 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.535 4.535 8 H 0.061 0.939 9 C 0.037 3.963 10 H -0.013 1.013 11 C -0.106 4.106 12 C -0.128 4.128 13 C 0.099 3.901 14 N -0.603 5.603 15 C 0.495 3.505 16 O -0.583 6.583 17 C 0.133 3.867 18 N -0.731 5.731 19 C 0.712 3.288 20 O -0.622 6.622 21 N -0.735 5.735 22 C 0.226 3.774 23 C -0.055 4.055 24 C -0.184 4.184 25 C -0.231 4.231 26 C -0.029 4.029 27 O -0.191 6.191 28 C 0.125 3.875 29 H 0.260 0.740 30 H 0.058 0.942 31 H 0.050 0.950 32 H 0.105 0.895 33 H 0.051 0.949 34 H 0.110 0.890 35 H 0.086 0.914 36 H 0.107 0.893 37 H 0.116 0.884 38 H 0.409 0.591 39 H 0.408 0.592 40 H 0.078 0.922 41 H 0.107 0.893 42 H 0.163 0.837 43 H 0.170 0.830 44 H 0.237 0.763 45 H 0.039 0.961 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.187 -16.733 -5.927 23.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.190 4.190 3 Si 0.782 3.218 4 H -0.200 1.200 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.573 4.573 8 H 0.079 0.921 9 C 0.018 3.982 10 H 0.005 0.995 11 C -0.144 4.144 12 C -0.166 4.166 13 C -0.023 4.023 14 N -0.335 5.335 15 C 0.283 3.717 16 O -0.464 6.464 17 C 0.006 3.994 18 N -0.389 5.389 19 C 0.412 3.588 20 O -0.503 6.503 21 N -0.391 5.391 22 C 0.103 3.897 23 C -0.105 4.105 24 C -0.204 4.204 25 C -0.250 4.250 26 C -0.096 4.096 27 O -0.087 6.087 28 C 0.003 3.997 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.123 0.877 33 H 0.070 0.930 34 H 0.128 0.872 35 H 0.104 0.896 36 H 0.125 0.875 37 H 0.133 0.867 38 H 0.246 0.754 39 H 0.244 0.756 40 H 0.096 0.904 41 H 0.125 0.875 42 H 0.180 0.820 43 H 0.187 0.813 44 H 0.253 0.747 45 H 0.057 0.943 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -15.115 -17.150 -5.611 23.538 hybrid contribution -0.177 2.310 -0.017 2.316 sum -15.292 -14.841 -5.628 22.040 Atomic orbital electron populations 1.70071 1.07307 1.27220 1.50701 1.25870 0.95588 1.02825 0.94671 0.85584 0.78738 0.79240 0.78277 1.20020 1.21395 1.18864 1.21517 0.93286 0.91529 1.50991 0.92066 1.18919 0.93158 0.93777 0.92361 0.99479 1.21523 0.97694 0.94205 1.00957 1.21848 0.99080 0.98213 0.97461 1.22009 0.94021 0.86777 0.99448 1.48454 1.05746 1.09146 1.70132 1.21009 0.82733 0.91525 0.76402 1.90678 1.62031 1.41163 1.52517 1.20922 0.80038 0.93008 1.05464 1.44780 1.06303 1.08876 1.78948 1.15745 0.81593 0.83832 0.77657 1.90905 1.73962 1.25551 1.59843 1.45059 1.04045 1.10616 1.79403 1.19387 0.79691 0.86154 1.04455 1.22252 0.93029 1.09183 0.86051 1.22020 0.94887 1.04181 0.99315 1.22231 0.98517 1.08027 0.96208 1.24894 0.87489 1.01933 0.95319 1.84048 1.20673 1.67252 1.36745 1.21737 0.97262 0.82661 0.98010 0.93138 0.92327 0.93115 0.87699 0.93001 0.87184 0.89585 0.87547 0.86662 0.75358 0.75604 0.90366 0.87541 0.81971 0.81251 0.74721 0.94280 0.90262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.66 11.39 21.45 0.24 -54.42 16 2 C 0.01 0.55 5.30 84.65 0.45 1.00 16 3 Si 0.96 43.81 29.54 68.60 2.03 45.83 16 4 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 5 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 6 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 7 C -0.53 -29.02 8.57 25.60 0.22 -28.80 16 8 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 9 C 0.04 1.83 2.25 -11.46 -0.03 1.80 16 10 H -0.01 -0.74 8.14 -2.38 -0.02 -0.76 16 11 C -0.11 -3.96 5.11 30.62 0.16 -3.81 16 12 C -0.13 -3.60 6.06 30.53 0.19 -3.41 16 13 C 0.10 2.62 6.31 86.22 0.54 3.17 16 14 N -0.60 -22.63 2.98 -819.72 -2.44 -25.07 16 15 C 0.50 18.43 7.77 87.66 0.68 19.11 16 16 O -0.58 -26.94 15.08 -3.05 -0.05 -26.99 16 17 C 0.13 3.66 4.50 85.63 0.39 4.04 16 18 N -0.73 -19.73 5.53 -482.31 -2.67 -22.39 16 19 C 0.71 18.73 8.57 179.06 1.53 20.26 16 20 O -0.62 -19.67 16.34 -4.00 -0.07 -19.73 16 21 N -0.73 -14.82 5.55 -482.28 -2.68 -17.50 16 22 C 0.23 4.01 6.20 85.63 0.53 4.54 16 23 C -0.06 -0.94 6.69 24.83 0.17 -0.77 16 24 C -0.18 -2.71 10.81 22.19 0.24 -2.47 16 25 C -0.23 -2.88 10.91 22.19 0.24 -2.64 16 26 C -0.03 -0.35 12.09 66.97 0.81 0.46 16 27 O -0.19 -3.41 10.65 -2.51 -0.03 -3.44 16 28 C 0.13 6.03 5.40 86.36 0.47 6.50 16 29 H 0.26 14.97 8.31 -92.70 -0.77 14.20 16 30 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.10 2.14 8.14 -2.39 -0.02 2.13 16 33 H 0.05 1.56 8.14 -2.39 -0.02 1.55 16 34 H 0.11 2.16 5.93 -2.39 -0.01 2.15 16 35 H 0.09 1.99 8.14 -2.38 -0.02 1.98 16 36 H 0.11 2.70 7.68 -2.39 -0.02 2.68 16 37 H 0.12 2.69 7.95 -2.39 -0.02 2.67 16 38 H 0.41 11.28 7.45 -92.71 -0.69 10.59 16 39 H 0.41 7.13 8.48 -92.71 -0.79 6.34 16 40 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.16 1.90 8.06 -2.91 -0.02 1.87 16 43 H 0.17 1.33 8.06 -2.91 -0.02 1.31 16 44 H 0.24 0.96 8.06 -2.91 -0.02 0.94 16 45 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 46 H 0.08 4.57 5.13 -2.38 -0.01 4.56 16 Total: -1.00 -75.75 381.05 0.47 -75.28 By element: Atomic # 1 Polarization: 29.90 SS G_CDS: -0.46 Total: 29.44 kcal Atomic # 6 Polarization: 12.40 SS G_CDS: 6.58 Total: 18.98 kcal Atomic # 7 Polarization: -111.84 SS G_CDS: -7.54 Total: -119.38 kcal Atomic # 8 Polarization: -50.02 SS G_CDS: -0.14 Total: -50.16 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.83 kcal Total: -75.75 0.47 -75.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597912957.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.970 kcal (2) G-P(sol) polarization free energy of solvation -75.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds