Wall clock time and date at job start Tue Mar 31 2020 18:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81409 * 1 3 3 C 1.81399 * 103.00088 * 2 1 4 4 C 1.50700 * 109.47165 * 179.97438 * 3 2 1 5 5 C 1.38626 * 120.46821 * 85.08907 * 4 3 2 6 6 C 1.38588 * 118.48941 * 180.02562 * 5 4 3 7 7 C 1.38601 * 119.34918 * 359.97438 * 6 5 4 8 8 N 1.31497 * 120.90086 * 359.97438 * 7 6 5 9 9 C 1.32744 * 121.64300 * 0.02694 * 8 7 6 10 10 C 1.48171 * 119.72125 * 179.97438 * 9 8 7 11 11 O 1.21515 * 119.99833 * 255.75802 * 10 9 8 12 12 N 1.34780 * 119.99985 * 75.76096 * 10 9 8 13 13 C 1.47073 * 120.87833 * 4.79548 * 12 10 9 14 14 C 1.53699 * 108.27490 * 128.75600 * 13 12 10 15 15 N 1.46901 * 109.25802 * 54.07970 * 14 13 12 16 16 C 1.46896 * 111.00176 * 172.60635 * 15 14 13 17 17 C 1.50706 * 109.47221 * 294.30290 * 16 15 14 18 18 H 1.07996 * 119.99871 * 359.97438 * 17 16 15 19 19 C 1.37875 * 120.00006 * 179.97438 * 17 16 15 20 20 N 1.31518 * 119.99958 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00136 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47158 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47385 * 120.00053 * 21 19 17 24 24 H 1.48503 * 109.47087 * 240.00270 * 21 19 17 25 25 C 1.46898 * 111.26657 * 296.76053 * 15 14 13 26 26 C 1.47074 * 120.87841 * 185.07235 * 12 10 9 27 27 H 1.08996 * 109.46763 * 59.99755 * 1 2 3 28 28 H 1.09001 * 109.47050 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46594 * 299.99897 * 1 2 3 30 30 H 1.09003 * 109.46986 * 59.99763 * 3 2 1 31 31 H 1.09003 * 109.47168 * 300.00483 * 3 2 1 32 32 H 1.08010 * 120.75662 * 0.04221 * 5 4 3 33 33 H 1.07997 * 120.32432 * 179.97438 * 6 5 4 34 34 H 1.07997 * 119.54798 * 179.97438 * 7 6 5 35 35 H 1.09003 * 109.62775 * 248.52183 * 13 12 10 36 36 H 1.08996 * 109.63598 * 9.10810 * 13 12 10 37 37 H 1.09000 * 109.65158 * 294.07593 * 14 13 12 38 38 H 1.09007 * 109.42302 * 173.94346 * 14 13 12 39 39 H 1.09004 * 109.47116 * 54.30248 * 16 15 14 40 40 H 1.08999 * 109.47308 * 174.29936 * 16 15 14 41 41 H 0.97004 * 120.00032 * 179.97438 * 20 19 17 42 42 H 1.08998 * 109.49097 * 303.14018 * 25 15 14 43 43 H 1.09009 * 109.51280 * 183.07674 * 25 15 14 44 44 H 1.08998 * 109.63199 * 350.89846 * 26 12 10 45 45 H 1.09004 * 109.62702 * 111.48006 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2222 1.7675 0.0000 4 6 3.7196 1.9373 0.0006 5 6 4.4301 1.9148 -1.1895 6 6 5.8059 2.0744 -1.1412 7 6 6.4266 2.2511 0.0854 8 7 5.7281 2.2694 1.1993 9 6 4.4091 2.1201 1.1967 10 6 3.6642 2.1472 2.4773 11 8 3.2509 1.1123 2.9618 12 7 3.4450 3.3197 3.1048 13 6 3.8437 4.5930 2.4860 14 6 2.6333 5.5400 2.5092 15 7 2.1299 5.6493 3.8850 16 6 1.0855 6.6776 3.9833 17 6 1.6858 8.0316 3.7047 18 1 2.7380 8.1194 3.4777 19 6 0.8917 9.1581 3.7395 20 7 -0.3896 9.0512 4.0164 21 14 1.6355 10.8363 3.3935 22 1 3.0858 10.6864 3.1118 23 1 0.9624 11.4431 2.2171 24 1 1.4498 11.7136 4.5772 25 6 1.6421 4.3545 4.3783 26 6 2.8062 3.3594 4.4290 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3632 0.5138 0.8900 30 1 1.8032 2.2371 0.8900 31 1 1.8032 2.2371 -0.8900 32 1 3.9229 1.7762 -2.1330 33 1 6.3886 2.0613 -2.0504 34 1 7.4986 2.3753 0.1268 35 1 4.6668 5.0321 3.0497 36 1 4.1537 4.4184 1.4558 37 1 1.8474 5.1463 1.8646 38 1 2.9366 6.5248 2.1536 39 1 0.3020 6.4705 3.2543 40 1 0.6598 6.6684 4.9867 41 1 -0.9482 9.8438 4.0413 42 1 0.8701 3.9772 3.7077 43 1 1.2262 4.4790 5.3782 44 1 2.4302 2.3686 4.6840 45 1 3.5316 3.6822 5.1759 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602202215.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:12 Heat of formation + Delta-G solvation = 16.490792 kcal Electronic energy + Delta-G solvation = -27053.230333 eV Core-core repulsion = 23390.244565 eV Total energy + Delta-G solvation = -3662.985769 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.01982 -39.32047 -37.46688 -34.44431 -34.03917 -32.66034 -32.20870 -30.76898 -29.25744 -28.42478 -27.68695 -25.86071 -24.50455 -23.30165 -22.69383 -22.00565 -20.80280 -19.20025 -17.58281 -17.13497 -16.71734 -16.44348 -16.21112 -15.76746 -15.07707 -14.86518 -14.60785 -14.46817 -14.40745 -14.07369 -13.88358 -13.76871 -13.68162 -13.60791 -13.41650 -13.09698 -12.81095 -12.68530 -12.32419 -12.07333 -11.94698 -11.33824 -11.12085 -11.00851 -10.80215 -10.68296 -10.56188 -10.45079 -10.20709 -10.03479 -9.92493 -9.60762 -9.31209 -9.16840 -8.55641 -8.47558 -7.79376 -7.37943 -6.10406 -4.12432 0.43785 0.84522 1.68493 2.36065 2.49944 2.93758 3.25651 3.33732 3.37697 3.46976 4.03492 4.17474 4.35322 4.35437 4.59303 4.61562 4.74960 4.92489 4.93893 4.97007 5.03849 5.14075 5.23422 5.26786 5.35395 5.36533 5.49323 5.51729 5.60690 5.70351 5.74577 5.78057 5.84150 6.00288 6.22393 6.25005 6.39725 6.41116 6.61987 7.16752 7.22137 7.43028 7.56023 7.70366 7.96456 8.06843 8.12502 8.42752 8.95133 9.52446 11.00410 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.012758 B = 0.003246 C = 0.003041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.207674 B = 8623.604219 C = 9206.456588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 S -0.233 6.233 3 C -0.049 4.049 4 C -0.092 4.092 5 C -0.057 4.057 6 C -0.161 4.161 7 C 0.106 3.894 8 N -0.455 5.455 9 C 0.122 3.878 10 C 0.571 3.429 11 O -0.518 6.518 12 N -0.595 5.595 13 C 0.116 3.884 14 C 0.052 3.948 15 N -0.534 5.534 16 C 0.194 3.806 17 C -0.509 4.509 18 H 0.065 0.935 19 C 0.056 3.944 20 N -0.897 5.897 21 Si 0.897 3.103 22 H -0.271 1.271 23 H -0.285 1.285 24 H -0.283 1.283 25 C 0.042 3.958 26 C 0.118 3.882 27 H 0.076 0.924 28 H 0.102 0.898 29 H 0.079 0.921 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.143 0.857 33 H 0.142 0.858 34 H 0.165 0.835 35 H 0.080 0.920 36 H 0.070 0.930 37 H 0.023 0.977 38 H 0.098 0.902 39 H -0.009 1.009 40 H 0.033 0.967 41 H 0.261 0.739 42 H 0.025 0.975 43 H 0.083 0.917 44 H 0.090 0.910 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.969 -15.255 -11.812 20.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.295 4.295 2 S -0.005 6.005 3 C -0.197 4.197 4 C -0.096 4.096 5 C -0.085 4.085 6 C -0.181 4.181 7 C -0.053 4.053 8 N -0.165 5.165 9 C -0.020 4.020 10 C 0.356 3.644 11 O -0.393 6.393 12 N -0.328 5.328 13 C -0.007 4.007 14 C -0.077 4.077 15 N -0.259 5.259 16 C 0.069 3.931 17 C -0.548 4.548 18 H 0.083 0.917 19 C -0.145 4.145 20 N -0.537 5.537 21 Si 0.725 3.275 22 H -0.196 1.196 23 H -0.211 1.211 24 H -0.210 1.210 25 C -0.088 4.088 26 C -0.004 4.004 27 H 0.095 0.905 28 H 0.121 0.879 29 H 0.098 0.902 30 H 0.110 0.890 31 H 0.116 0.884 32 H 0.161 0.839 33 H 0.160 0.840 34 H 0.182 0.818 35 H 0.098 0.902 36 H 0.089 0.911 37 H 0.041 0.959 38 H 0.116 0.884 39 H 0.008 0.992 40 H 0.051 0.949 41 H 0.071 0.929 42 H 0.044 0.956 43 H 0.102 0.898 44 H 0.109 0.891 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 8.982 -16.331 -10.390 21.339 hybrid contribution -1.658 1.774 -1.569 2.891 sum 7.324 -14.558 -11.960 20.214 Atomic orbital electron populations 1.23424 0.94377 1.06563 1.05112 1.87096 1.06969 1.08528 1.97948 1.22243 0.94441 0.96630 1.06341 1.20060 0.94699 1.01367 0.93505 1.21458 0.94184 0.95049 0.97781 1.22307 0.95097 1.00721 0.99980 1.22904 1.00496 0.94605 0.87304 1.67724 1.05940 1.11348 1.31449 1.20950 0.90575 0.97284 0.93179 1.17885 0.79409 0.83962 0.83136 1.90824 1.50916 1.32149 1.65415 1.48132 1.59153 1.05869 1.19659 1.22039 0.98478 0.82880 0.97313 1.22414 0.94764 0.99646 0.90886 1.62067 1.39038 1.05038 1.19786 1.19737 0.87830 0.88727 0.96833 1.21174 0.95642 0.90692 1.47290 0.91728 1.24989 0.94790 0.99366 0.95384 1.69967 1.04922 1.29519 1.49274 0.86451 0.79352 0.83844 0.77842 1.19598 1.21130 1.20953 1.22410 0.94752 0.90621 1.00990 1.21836 0.95384 1.00276 0.82873 0.90508 0.87929 0.90214 0.88990 0.88370 0.83892 0.83979 0.81819 0.90173 0.91129 0.95902 0.88387 0.99153 0.94925 0.92911 0.95639 0.89831 0.89135 0.90449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.16 10.76 101.05 1.09 -0.07 16 2 S -0.23 -2.85 22.36 -107.50 -2.40 -5.26 16 3 C -0.05 -0.57 5.77 36.01 0.21 -0.36 16 4 C -0.09 -1.12 5.19 -104.10 -0.54 -1.66 16 5 C -0.06 -0.52 9.87 -39.31 -0.39 -0.91 16 6 C -0.16 -1.27 10.11 -39.32 -0.40 -1.67 16 7 C 0.11 1.02 11.18 -17.56 -0.20 0.83 16 8 N -0.45 -6.11 10.29 -9.80 -0.10 -6.22 16 9 C 0.12 1.74 4.51 -83.01 -0.37 1.37 16 10 C 0.57 9.37 5.72 -12.18 -0.07 9.30 16 11 O -0.52 -9.75 16.56 5.35 0.09 -9.66 16 12 N -0.60 -9.46 3.00 -173.18 -0.52 -9.98 16 13 C 0.12 1.78 6.51 -3.37 -0.02 1.76 16 14 C 0.05 0.95 5.47 -3.46 -0.02 0.93 16 15 N -0.53 -10.90 4.62 -235.46 -1.09 -11.99 16 16 C 0.19 4.83 4.72 -4.97 -0.02 4.80 16 17 C -0.51 -13.67 8.41 -34.44 -0.29 -13.96 16 18 H 0.06 1.71 7.13 -52.49 -0.37 1.33 16 19 C 0.06 1.54 5.46 -17.82 -0.10 1.45 16 20 N -0.90 -25.95 13.29 55.43 0.74 -25.21 16 21 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 22 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 23 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 C 0.04 0.73 5.62 -3.70 -0.02 0.71 16 26 C 0.12 1.86 6.61 -3.61 -0.02 1.83 16 27 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.10 0.81 8.14 -51.92 -0.42 0.38 16 29 H 0.08 0.77 8.14 -51.92 -0.42 0.35 16 30 H 0.09 1.25 6.91 -51.92 -0.36 0.89 16 31 H 0.10 0.92 8.13 -51.92 -0.42 0.49 16 32 H 0.14 0.94 8.06 -52.48 -0.42 0.52 16 33 H 0.14 0.65 8.06 -52.49 -0.42 0.22 16 34 H 0.16 1.05 8.06 -52.49 -0.42 0.63 16 35 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.07 0.99 6.45 -51.93 -0.33 0.65 16 37 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.10 1.89 6.67 -51.93 -0.35 1.54 16 39 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 40 H 0.03 0.87 7.97 -51.93 -0.41 0.46 16 41 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 42 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.08 1.41 7.99 -51.92 -0.41 1.00 16 44 H 0.09 1.39 7.04 -51.93 -0.37 1.03 16 45 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 LS Contribution 382.77 15.07 5.77 5.77 Total: -1.00 -32.57 382.77 -10.52 -43.09 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -6.81 Total: -0.80 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: -1.17 Total: 4.34 kcal Atomic # 7 Polarization: -52.43 SS G_CDS: -0.97 Total: -53.40 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.09 Total: -9.66 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: -2.85 SS G_CDS: -2.40 Total: -5.26 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.57 -10.52 -43.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602202215.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.585 kcal (2) G-P(sol) polarization free energy of solvation -32.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds