Wall clock time and date at job start Tue Mar 31 2020 18:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81409 * 1 3 3 C 1.81399 * 103.00088 * 2 1 4 4 C 1.50700 * 109.47165 * 179.97438 * 3 2 1 5 5 C 1.38626 * 120.46821 * 85.08907 * 4 3 2 6 6 C 1.38588 * 118.48941 * 180.02562 * 5 4 3 7 7 C 1.38601 * 119.34918 * 359.97438 * 6 5 4 8 8 N 1.31497 * 120.90086 * 359.97438 * 7 6 5 9 9 C 1.32744 * 121.64300 * 0.02694 * 8 7 6 10 10 C 1.48171 * 119.72125 * 179.97438 * 9 8 7 11 11 O 1.21515 * 119.99833 * 255.75802 * 10 9 8 12 12 N 1.34780 * 119.99985 * 75.76096 * 10 9 8 13 13 C 1.47073 * 120.87833 * 4.79548 * 12 10 9 14 14 C 1.53699 * 108.27490 * 128.75600 * 13 12 10 15 15 N 1.46901 * 109.25802 * 54.07970 * 14 13 12 16 16 C 1.46896 * 111.00176 * 172.60635 * 15 14 13 17 17 C 1.50706 * 109.47221 * 294.30290 * 16 15 14 18 18 H 1.07996 * 119.99871 * 359.97438 * 17 16 15 19 19 C 1.37875 * 120.00006 * 179.97438 * 17 16 15 20 20 N 1.31518 * 119.99958 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00136 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47158 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47385 * 120.00053 * 21 19 17 24 24 H 1.48503 * 109.47087 * 240.00270 * 21 19 17 25 25 C 1.46898 * 111.26657 * 296.76053 * 15 14 13 26 26 C 1.47074 * 120.87841 * 185.07235 * 12 10 9 27 27 H 1.08996 * 109.46763 * 59.99755 * 1 2 3 28 28 H 1.09001 * 109.47050 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46594 * 299.99897 * 1 2 3 30 30 H 1.09003 * 109.46986 * 59.99763 * 3 2 1 31 31 H 1.09003 * 109.47168 * 300.00483 * 3 2 1 32 32 H 1.08010 * 120.75662 * 0.04221 * 5 4 3 33 33 H 1.07997 * 120.32432 * 179.97438 * 6 5 4 34 34 H 1.07997 * 119.54798 * 179.97438 * 7 6 5 35 35 H 1.09003 * 109.62775 * 248.52183 * 13 12 10 36 36 H 1.08996 * 109.63598 * 9.10810 * 13 12 10 37 37 H 1.09000 * 109.65158 * 294.07593 * 14 13 12 38 38 H 1.09007 * 109.42302 * 173.94346 * 14 13 12 39 39 H 1.09004 * 109.47116 * 54.30248 * 16 15 14 40 40 H 1.08999 * 109.47308 * 174.29936 * 16 15 14 41 41 H 0.97004 * 120.00032 * 179.97438 * 20 19 17 42 42 H 1.08998 * 109.49097 * 303.14018 * 25 15 14 43 43 H 1.09009 * 109.51280 * 183.07674 * 25 15 14 44 44 H 1.08998 * 109.63199 * 350.89846 * 26 12 10 45 45 H 1.09004 * 109.62702 * 111.48006 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2222 1.7675 0.0000 4 6 3.7196 1.9373 0.0006 5 6 4.4301 1.9148 -1.1895 6 6 5.8059 2.0744 -1.1412 7 6 6.4266 2.2511 0.0854 8 7 5.7281 2.2694 1.1993 9 6 4.4091 2.1201 1.1967 10 6 3.6642 2.1472 2.4773 11 8 3.2509 1.1123 2.9618 12 7 3.4450 3.3197 3.1048 13 6 3.8437 4.5930 2.4860 14 6 2.6333 5.5400 2.5092 15 7 2.1299 5.6493 3.8850 16 6 1.0855 6.6776 3.9833 17 6 1.6858 8.0316 3.7047 18 1 2.7380 8.1194 3.4777 19 6 0.8917 9.1581 3.7395 20 7 -0.3896 9.0512 4.0164 21 14 1.6355 10.8363 3.3935 22 1 3.0858 10.6864 3.1118 23 1 0.9624 11.4431 2.2171 24 1 1.4498 11.7136 4.5772 25 6 1.6421 4.3545 4.3783 26 6 2.8062 3.3594 4.4290 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3632 0.5138 0.8900 30 1 1.8032 2.2371 0.8900 31 1 1.8032 2.2371 -0.8900 32 1 3.9229 1.7762 -2.1330 33 1 6.3886 2.0613 -2.0504 34 1 7.4986 2.3753 0.1268 35 1 4.6668 5.0321 3.0497 36 1 4.1537 4.4184 1.4558 37 1 1.8474 5.1463 1.8646 38 1 2.9366 6.5248 2.1536 39 1 0.3020 6.4705 3.2543 40 1 0.6598 6.6684 4.9867 41 1 -0.9482 9.8438 4.0413 42 1 0.8701 3.9772 3.7077 43 1 1.2262 4.4790 5.3782 44 1 2.4302 2.3686 4.6840 45 1 3.5316 3.6822 5.1759 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602202215.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:11 Heat of formation + Delta-G solvation = -4.915181 kcal Electronic energy + Delta-G solvation = -27054.158566 eV Core-core repulsion = 23390.244565 eV Total energy + Delta-G solvation = -3663.914001 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.01531 -40.46971 -38.93121 -36.03529 -34.87602 -34.45605 -33.25332 -32.11158 -30.14329 -29.95839 -28.65203 -27.43546 -25.64047 -24.73229 -23.82338 -23.38452 -22.19582 -20.44527 -18.77769 -18.50206 -18.01053 -17.69289 -17.36019 -16.73185 -16.54451 -16.16208 -16.04374 -15.80354 -15.48434 -15.35351 -15.22865 -14.90447 -14.79315 -14.51746 -14.32155 -14.17939 -14.00164 -13.85652 -13.59432 -13.51669 -13.09784 -12.87694 -12.77041 -12.65121 -12.46268 -12.36725 -12.17082 -11.81288 -11.38792 -11.29020 -11.26365 -10.80346 -10.62978 -10.53772 -10.01049 -9.88330 -9.10559 -8.72702 -8.20894 -6.30994 -0.38718 0.09717 0.86342 1.30464 1.42228 1.43934 1.52800 1.56667 1.74881 2.40573 2.67512 3.02177 3.11225 3.18493 3.29009 3.54794 3.84087 3.85497 3.95004 3.98272 4.10039 4.15467 4.17670 4.23191 4.26771 4.28557 4.35555 4.39834 4.51953 4.59050 4.66536 4.77605 4.79818 4.86563 4.94696 5.02346 5.09412 5.14871 5.19074 5.33895 5.57537 5.63368 6.00657 6.12544 6.27206 6.52513 6.74533 6.84692 6.89239 7.39140 8.90586 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.012758 B = 0.003246 C = 0.003041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.207674 B = 8623.604219 C = 9206.456588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 S -0.279 6.279 3 C -0.039 4.039 4 C -0.103 4.103 5 C -0.057 4.057 6 C -0.140 4.140 7 C 0.100 3.900 8 N -0.485 5.485 9 C 0.090 3.910 10 C 0.572 3.428 11 O -0.552 6.552 12 N -0.599 5.599 13 C 0.133 3.867 14 C 0.056 3.944 15 N -0.537 5.537 16 C 0.209 3.791 17 C -0.521 4.521 18 H 0.068 0.932 19 C 0.003 3.997 20 N -0.935 5.935 21 Si 0.968 3.032 22 H -0.260 1.260 23 H -0.280 1.280 24 H -0.281 1.281 25 C 0.046 3.954 26 C 0.126 3.874 27 H 0.095 0.905 28 H 0.116 0.884 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.121 0.879 32 H 0.172 0.828 33 H 0.186 0.814 34 H 0.196 0.804 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.017 0.983 38 H 0.087 0.913 39 H -0.039 1.039 40 H 0.007 0.993 41 H 0.264 0.736 42 H 0.017 0.983 43 H 0.087 0.913 44 H 0.094 0.906 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.128 -15.053 -14.280 23.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.284 4.284 2 S -0.051 6.051 3 C -0.187 4.187 4 C -0.107 4.107 5 C -0.084 4.084 6 C -0.159 4.159 7 C -0.060 4.060 8 N -0.195 5.195 9 C -0.050 4.050 10 C 0.359 3.641 11 O -0.429 6.429 12 N -0.331 5.331 13 C 0.010 3.990 14 C -0.073 4.073 15 N -0.262 5.262 16 C 0.083 3.917 17 C -0.559 4.559 18 H 0.086 0.914 19 C -0.195 4.195 20 N -0.576 5.576 21 Si 0.793 3.207 22 H -0.183 1.183 23 H -0.205 1.205 24 H -0.207 1.207 25 C -0.083 4.083 26 C 0.004 3.996 27 H 0.114 0.886 28 H 0.134 0.866 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.139 0.861 32 H 0.189 0.811 33 H 0.203 0.797 34 H 0.213 0.787 35 H 0.102 0.898 36 H 0.107 0.893 37 H 0.035 0.965 38 H 0.106 0.894 39 H -0.021 1.021 40 H 0.025 0.975 41 H 0.073 0.927 42 H 0.035 0.965 43 H 0.105 0.895 44 H 0.112 0.888 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 11.156 -16.141 -12.863 23.462 hybrid contribution -2.310 1.633 -0.856 2.955 sum 8.847 -14.508 -13.719 21.839 Atomic orbital electron populations 1.23463 0.91714 1.07635 1.05557 1.87173 1.10056 1.09872 1.98002 1.22200 0.94771 0.95662 1.06025 1.20188 0.94750 1.01813 0.93977 1.21861 0.94922 0.93987 0.97678 1.22785 0.94740 0.97475 1.00913 1.23544 1.01811 0.93610 0.87027 1.67650 1.05633 1.12574 1.33666 1.20620 0.91232 1.00643 0.92476 1.18323 0.78808 0.83247 0.83732 1.90785 1.52340 1.33141 1.66602 1.48197 1.59097 1.06201 1.19602 1.21877 0.96775 0.81863 0.98511 1.22390 0.95654 0.99904 0.89345 1.61991 1.37346 1.05486 1.21401 1.19386 0.88066 0.89942 0.94335 1.21473 0.95848 0.91563 1.47023 0.91371 1.25895 0.95106 1.03485 0.95017 1.70097 1.06411 1.30750 1.50326 0.85343 0.79016 0.78665 0.77662 1.18340 1.20548 1.20726 1.22423 0.95475 0.89671 1.00763 1.21728 0.94778 0.99652 0.83463 0.88625 0.86565 0.91140 0.91728 0.86051 0.81056 0.79688 0.78746 0.89830 0.89293 0.96517 0.89427 1.02100 0.97460 0.92731 0.96475 0.89515 0.88820 0.89566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.05 10.76 113.37 1.22 -0.83 16 2 S -0.28 -6.74 22.36 -56.49 -1.26 -8.01 16 3 C -0.04 -0.89 5.77 71.24 0.41 -0.48 16 4 C -0.10 -2.36 5.19 -19.52 -0.10 -2.46 16 5 C -0.06 -0.86 9.87 22.45 0.22 -0.64 16 6 C -0.14 -1.60 10.11 22.44 0.23 -1.38 16 7 C 0.10 1.60 11.18 84.83 0.95 2.54 16 8 N -0.48 -12.31 10.29 -184.91 -1.90 -14.21 16 9 C 0.09 2.53 4.51 41.89 0.19 2.72 16 10 C 0.57 19.05 5.72 86.88 0.50 19.55 16 11 O -0.55 -21.41 16.56 -3.76 -0.06 -21.47 16 12 N -0.60 -19.20 3.00 -820.11 -2.46 -21.67 16 13 C 0.13 4.02 6.51 86.51 0.56 4.58 16 14 C 0.06 2.06 5.47 86.54 0.47 2.54 16 15 N -0.54 -22.52 4.62 -898.86 -4.15 -26.67 16 16 C 0.21 10.83 4.72 85.56 0.40 11.23 16 17 C -0.52 -28.36 8.41 25.60 0.22 -28.15 16 18 H 0.07 3.59 7.13 -2.91 -0.02 3.57 16 19 C 0.00 0.17 5.46 84.65 0.46 0.63 16 20 N -0.94 -55.15 13.29 21.45 0.28 -54.86 16 21 Si 0.97 42.82 29.54 68.60 2.03 44.85 16 22 H -0.26 -10.88 7.11 99.48 0.71 -10.18 16 23 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 24 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 25 C 0.05 1.66 5.62 86.38 0.49 2.14 16 26 C 0.13 4.02 6.61 86.35 0.57 4.59 16 27 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.06 1.81 6.91 -2.39 -0.02 1.79 16 31 H 0.12 2.09 8.13 -2.39 -0.02 2.07 16 32 H 0.17 1.54 8.06 -2.91 -0.02 1.51 16 33 H 0.19 0.54 8.06 -2.91 -0.02 0.51 16 34 H 0.20 1.72 8.06 -2.91 -0.02 1.69 16 35 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 36 H 0.09 2.41 6.45 -2.39 -0.02 2.39 16 37 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.09 3.40 6.67 -2.38 -0.02 3.39 16 39 H -0.04 -2.20 8.12 -2.38 -0.02 -2.22 16 40 H 0.01 0.41 7.97 -2.39 -0.02 0.39 16 41 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 42 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 43 H 0.09 3.05 7.99 -2.38 -0.02 3.04 16 44 H 0.09 2.96 7.04 -2.39 -0.02 2.94 16 45 H 0.09 2.61 8.14 -2.38 -0.02 2.59 16 Total: -1.00 -73.18 382.77 0.23 -72.94 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: 0.98 Total: 12.50 kcal Atomic # 6 Polarization: 9.82 SS G_CDS: 6.79 Total: 16.60 kcal Atomic # 7 Polarization: -109.18 SS G_CDS: -8.23 Total: -117.41 kcal Atomic # 8 Polarization: -21.41 SS G_CDS: -0.06 Total: -21.47 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Atomic # 16 Polarization: -6.74 SS G_CDS: -1.26 Total: -8.01 kcal Total: -73.18 0.23 -72.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602202215.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.027 kcal (2) G-P(sol) polarization free energy of solvation -73.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds