Wall clock time and date at job start Tue Mar 31 2020 18:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86796 * 119.99565 * 2 1 4 4 H 1.48496 * 109.46869 * 269.99619 * 3 2 1 5 5 H 1.48497 * 109.47333 * 30.00007 * 3 2 1 6 6 H 1.48502 * 109.46868 * 150.00354 * 3 2 1 7 7 C 1.37876 * 119.99950 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99706 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00373 * 359.97438 * 7 2 1 10 10 N 1.46894 * 109.47555 * 180.02562 * 9 7 2 11 11 C 1.46900 * 111.00128 * 169.99945 * 10 9 7 12 12 C 1.53240 * 109.33864 * 187.25344 * 11 10 9 13 13 N 1.47080 * 108.52284 * 306.17657 * 12 11 10 14 14 C 1.34785 * 120.87884 * 231.18949 * 13 12 11 15 15 O 1.21280 * 119.99868 * 359.97438 * 14 13 12 16 16 C 1.50698 * 119.99994 * 179.97438 * 14 13 12 17 17 C 1.53004 * 109.47094 * 179.97438 * 16 14 13 18 18 N 1.46493 * 109.47077 * 180.02562 * 17 16 14 19 19 C 1.34778 * 120.00286 * 180.02562 * 18 17 16 20 20 O 1.21702 * 119.99455 * 359.97438 * 19 18 17 21 21 C 1.46648 * 120.00461 * 179.97438 * 19 18 17 22 22 C 1.36548 * 125.99061 * 179.97438 * 21 19 18 23 23 C 1.40360 * 106.70846 * 180.19236 * 22 21 19 24 24 C 1.35135 * 107.11904 * 359.63470 * 23 22 21 25 25 O 1.33936 * 108.76005 * 0.36846 * 24 23 22 26 26 C 1.47074 * 118.23959 * 51.45247 * 13 12 11 27 27 C 1.46897 * 110.99813 * 294.30493 * 10 9 7 28 28 H 0.96996 * 120.00455 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.46923 * 59.99707 * 9 7 2 30 30 H 1.09001 * 109.47369 * 300.00673 * 9 7 2 31 31 H 1.08996 * 109.48803 * 67.29875 * 11 10 9 32 32 H 1.08996 * 109.49293 * 307.21149 * 11 10 9 33 33 H 1.09000 * 109.62896 * 186.45889 * 12 11 10 34 34 H 1.09003 * 109.62724 * 65.87721 * 12 11 10 35 35 H 1.09005 * 109.46903 * 59.99735 * 16 14 13 36 36 H 1.09000 * 109.47366 * 299.99987 * 16 14 13 37 37 H 1.08994 * 109.46715 * 59.99802 * 17 16 14 38 38 H 1.08995 * 109.46839 * 300.00037 * 17 16 14 39 39 H 0.97007 * 120.00144 * 359.97438 * 18 17 16 40 40 H 1.08002 * 126.64113 * 359.92504 * 22 21 19 41 41 H 1.07998 * 126.43957 * 179.77000 * 23 22 21 42 42 H 1.07992 * 125.61842 * 180.11453 * 24 23 22 43 43 H 1.08993 * 109.62925 * 68.25972 * 26 13 12 44 44 H 1.09007 * 109.62615 * 188.83698 * 26 13 12 45 45 H 1.08999 * 109.49619 * 292.70154 * 27 10 9 46 46 H 1.09002 * 109.49789 * 52.78424 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 1.5212 -4.8935 0.2376 12 6 2.5639 -6.0032 0.4104 13 7 3.4618 -5.9862 -0.7544 14 6 3.7121 -7.1123 -1.4514 15 8 3.1946 -8.1580 -1.1203 16 6 4.6350 -7.0721 -2.6420 17 6 4.7471 -8.4726 -3.2479 18 7 5.6447 -8.4336 -4.4050 19 6 5.8952 -9.5596 -5.1019 20 8 5.3759 -10.6090 -4.7696 21 6 6.7933 -9.5205 -6.2606 22 6 7.1314 -10.5822 -7.0499 23 6 8.0106 -10.0934 -8.0288 24 6 8.1623 -8.7699 -7.8020 25 8 7.4296 -8.4291 -6.7339 26 6 4.0839 -4.7089 -1.1348 27 6 2.9768 -3.6490 -1.2504 28 1 -0.4850 0.8400 0.0004 29 1 0.6241 -2.5567 -0.8903 30 1 0.6247 -2.5572 0.8896 31 1 0.8798 -5.1264 -0.6123 32 1 0.9161 -4.8191 1.1411 33 1 2.0633 -6.9694 0.4729 34 1 3.1395 -5.8264 1.3190 35 1 5.6216 -6.7333 -2.3257 36 1 4.2364 -6.3841 -3.3876 37 1 3.7607 -8.8116 -3.5640 38 1 5.1459 -9.1601 -2.5021 39 1 6.0583 -7.5971 -4.6701 40 1 6.7919 -11.6015 -6.9394 41 1 8.4764 -10.6668 -8.8165 42 1 8.7766 -8.0985 -8.3835 43 1 4.8028 -4.4102 -0.3720 44 1 4.5887 -4.8191 -2.0947 45 1 2.3150 -3.8993 -2.0796 46 1 3.4273 -2.6721 -1.4261 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602210794.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:50 Heat of formation + Delta-G solvation = -43.869941 kcal Electronic energy + Delta-G solvation = -27867.833436 eV Core-core repulsion = 23759.477359 eV Total energy + Delta-G solvation = -4108.356077 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.10163 -40.26563 -39.61470 -37.66168 -35.59292 -34.48386 -33.52195 -32.55053 -31.85090 -30.77975 -29.88307 -28.26800 -25.88729 -24.75383 -23.37867 -22.83296 -22.17281 -21.89578 -20.87958 -20.48979 -19.13029 -18.45076 -17.35986 -16.82565 -16.72443 -16.44007 -16.15367 -15.91898 -15.56606 -15.05507 -14.81391 -14.49258 -14.47810 -14.10541 -13.78111 -13.65850 -13.55808 -13.44338 -13.35157 -13.08012 -12.77290 -12.49728 -12.09281 -11.90832 -11.76682 -11.35210 -11.12233 -11.01852 -10.82286 -10.71482 -10.67538 -10.59255 -10.51568 -9.95795 -9.76594 -9.56460 -9.33181 -9.10369 -8.58027 -8.49502 -7.39506 -6.11030 -4.13493 0.63910 1.91669 2.21419 2.59112 2.68127 2.81545 3.16610 3.25180 3.32407 3.35609 4.19967 4.33974 4.41040 4.45380 4.51865 4.61821 4.71068 4.77237 5.08563 5.17663 5.22427 5.26165 5.32238 5.32817 5.43463 5.45383 5.56968 5.57976 5.68583 5.70459 5.80547 5.86013 5.94282 5.97313 6.22801 6.35880 6.37633 6.38848 6.59457 7.04378 7.16122 7.21930 7.44914 7.68522 7.69336 7.95649 8.06036 8.14586 8.41314 8.93532 9.51212 10.99676 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015907 B = 0.001966 C = 0.001786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.836138 B =14237.413010 C =15675.706710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.899 3.101 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.511 4.511 8 H 0.064 0.936 9 C 0.193 3.807 10 N -0.535 5.535 11 C 0.041 3.959 12 C 0.118 3.882 13 N -0.606 5.606 14 C 0.518 3.482 15 O -0.547 6.547 16 C -0.154 4.154 17 C 0.135 3.865 18 N -0.720 5.720 19 C 0.603 3.397 20 O -0.515 6.515 21 C -0.080 4.080 22 C -0.120 4.120 23 C -0.226 4.226 24 C -0.005 4.005 25 O -0.164 6.164 26 C 0.107 3.893 27 C 0.049 3.951 28 H 0.262 0.738 29 H -0.009 1.009 30 H 0.032 0.968 31 H 0.027 0.973 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.073 0.927 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.406 0.594 40 H 0.161 0.839 41 H 0.157 0.843 42 H 0.211 0.789 43 H 0.078 0.922 44 H 0.080 0.920 45 H 0.025 0.975 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.520 -15.675 -13.742 26.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.549 4.549 8 H 0.082 0.918 9 C 0.068 3.932 10 N -0.261 5.261 11 C -0.089 4.089 12 C -0.005 4.005 13 N -0.340 5.340 14 C 0.306 3.694 15 O -0.425 6.425 16 C -0.194 4.194 17 C 0.011 3.989 18 N -0.372 5.372 19 C 0.389 3.611 20 O -0.392 6.392 21 C -0.132 4.132 22 C -0.140 4.140 23 C -0.245 4.245 24 C -0.075 4.075 25 O -0.060 6.060 26 C -0.015 4.015 27 C -0.080 4.080 28 H 0.072 0.928 29 H 0.009 0.991 30 H 0.050 0.950 31 H 0.045 0.955 32 H 0.100 0.900 33 H 0.107 0.893 34 H 0.092 0.908 35 H 0.120 0.880 36 H 0.120 0.880 37 H 0.100 0.900 38 H 0.100 0.900 39 H 0.240 0.760 40 H 0.179 0.821 41 H 0.175 0.825 42 H 0.228 0.772 43 H 0.096 0.904 44 H 0.098 0.902 45 H 0.044 0.956 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 15.967 -16.478 -12.749 26.248 hybrid contribution 0.097 1.341 -1.023 1.690 sum 16.063 -15.137 -13.772 26.016 Atomic orbital electron populations 1.69956 1.06097 1.26914 1.50621 1.25006 0.94875 0.99394 0.95343 0.86488 0.79797 0.83050 0.78020 1.20738 1.21241 1.19749 1.21120 0.93430 0.89839 1.50521 0.91804 1.19735 0.90004 0.87148 0.96292 1.62078 1.28135 1.02749 1.33104 1.22410 0.94958 0.90492 1.01012 1.21777 0.91704 0.99586 0.87390 1.48232 1.46750 1.08568 1.30417 1.20196 0.81984 0.83444 0.83812 1.90714 1.52282 1.30045 1.69464 1.21833 1.01324 0.98761 0.97521 1.21130 0.94706 0.96173 0.86853 1.45881 1.48939 1.11164 1.31189 1.16500 0.79945 0.84224 0.80463 1.90925 1.50603 1.30134 1.67581 1.22088 1.03933 0.86079 1.01079 1.22017 0.97752 1.00035 0.94209 1.21896 1.04147 0.95175 1.03271 1.24456 0.96977 0.96988 0.89104 1.84062 1.48455 1.35447 1.38003 1.22148 0.96275 0.82627 1.00489 1.22418 0.95070 0.99012 0.91493 0.92829 0.99081 0.94975 0.95512 0.89988 0.89307 0.90838 0.88020 0.87956 0.90003 0.90007 0.75952 0.82149 0.82506 0.77214 0.90383 0.90187 0.95643 0.88418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.84 13.29 55.43 0.74 -25.10 16 2 C 0.06 1.51 5.46 -17.82 -0.10 1.41 16 3 Si 0.90 20.71 29.54 -169.99 -5.02 15.69 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.51 -13.53 8.41 -34.44 -0.29 -13.82 16 8 H 0.06 1.65 7.12 -52.49 -0.37 1.27 16 9 C 0.19 4.77 4.72 -4.98 -0.02 4.75 16 10 N -0.54 -10.64 4.62 -235.47 -1.09 -11.73 16 11 C 0.04 0.70 5.62 -3.70 -0.02 0.68 16 12 C 0.12 1.75 6.60 -3.60 -0.02 1.73 16 13 N -0.61 -8.37 3.00 -172.18 -0.52 -8.89 16 14 C 0.52 6.94 7.71 -10.98 -0.08 6.86 16 15 O -0.55 -9.21 15.43 5.56 0.09 -9.12 16 16 C -0.15 -1.38 4.18 -27.88 -0.12 -1.50 16 17 C 0.13 1.40 4.96 -4.04 -0.02 1.38 16 18 N -0.72 -6.42 5.55 -61.63 -0.34 -6.77 16 19 C 0.60 6.76 7.79 -12.87 -0.10 6.66 16 20 O -0.52 -7.59 16.87 5.19 0.09 -7.51 16 21 C -0.08 -0.75 7.13 -36.80 -0.26 -1.02 16 22 C -0.12 -1.01 10.62 -39.39 -0.42 -1.43 16 23 C -0.23 -1.35 10.87 -39.89 -0.43 -1.78 16 24 C -0.01 -0.03 12.08 29.63 0.36 0.33 16 25 O -0.16 -1.26 10.40 4.99 0.05 -1.21 16 26 C 0.11 1.35 6.53 -3.37 -0.02 1.33 16 27 C 0.05 0.83 5.47 -3.46 -0.02 0.81 16 28 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 29 H -0.01 -0.23 8.12 -51.93 -0.42 -0.65 16 30 H 0.03 0.86 7.97 -51.93 -0.41 0.44 16 31 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 1.38 7.99 -51.93 -0.41 0.97 16 33 H 0.09 1.33 7.06 -51.93 -0.37 0.96 16 34 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 35 H 0.10 0.68 7.99 -51.93 -0.41 0.27 16 36 H 0.10 0.77 7.67 -51.93 -0.40 0.37 16 37 H 0.08 1.00 8.10 -51.93 -0.42 0.58 16 38 H 0.08 0.97 8.10 -51.93 -0.42 0.55 16 39 H 0.41 2.55 8.23 -40.82 -0.34 2.22 16 40 H 0.16 1.26 8.06 -52.49 -0.42 0.84 16 41 H 0.16 0.55 8.06 -52.49 -0.42 0.13 16 42 H 0.21 0.23 8.06 -52.49 -0.42 -0.20 16 43 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.08 0.73 6.02 -51.92 -0.31 0.42 16 45 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 46 H 0.10 1.75 6.67 -51.93 -0.35 1.41 16 LS Contribution 384.26 15.07 5.79 5.79 Total: -1.00 -34.22 384.26 -8.52 -42.75 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -6.73 Total: -0.31 kcal Atomic # 6 Polarization: 7.98 SS G_CDS: -1.57 Total: 6.40 kcal Atomic # 7 Polarization: -51.27 SS G_CDS: -1.21 Total: -52.48 kcal Atomic # 8 Polarization: -18.06 SS G_CDS: 0.23 Total: -17.83 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.22 -8.52 -42.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602210794.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.124 kcal (2) G-P(sol) polarization free energy of solvation -34.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds