Wall clock time and date at job start Tue Mar 31 2020 18:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86796 * 119.99565 * 2 1 4 4 H 1.48496 * 109.46869 * 269.99619 * 3 2 1 5 5 H 1.48497 * 109.47333 * 30.00007 * 3 2 1 6 6 H 1.48502 * 109.46868 * 150.00354 * 3 2 1 7 7 C 1.37876 * 119.99950 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99706 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00373 * 359.97438 * 7 2 1 10 10 N 1.46894 * 109.47555 * 180.02562 * 9 7 2 11 11 C 1.46900 * 111.00128 * 169.99945 * 10 9 7 12 12 C 1.53240 * 109.33864 * 187.25344 * 11 10 9 13 13 N 1.47080 * 108.52284 * 306.17657 * 12 11 10 14 14 C 1.34785 * 120.87884 * 231.18949 * 13 12 11 15 15 O 1.21280 * 119.99868 * 359.97438 * 14 13 12 16 16 C 1.50698 * 119.99994 * 179.97438 * 14 13 12 17 17 C 1.53004 * 109.47094 * 179.97438 * 16 14 13 18 18 N 1.46493 * 109.47077 * 180.02562 * 17 16 14 19 19 C 1.34778 * 120.00286 * 180.02562 * 18 17 16 20 20 O 1.21702 * 119.99455 * 359.97438 * 19 18 17 21 21 C 1.46648 * 120.00461 * 179.97438 * 19 18 17 22 22 C 1.36548 * 125.99061 * 179.97438 * 21 19 18 23 23 C 1.40360 * 106.70846 * 180.19236 * 22 21 19 24 24 C 1.35135 * 107.11904 * 359.63470 * 23 22 21 25 25 O 1.33936 * 108.76005 * 0.36846 * 24 23 22 26 26 C 1.47074 * 118.23959 * 51.45247 * 13 12 11 27 27 C 1.46897 * 110.99813 * 294.30493 * 10 9 7 28 28 H 0.96996 * 120.00455 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.46923 * 59.99707 * 9 7 2 30 30 H 1.09001 * 109.47369 * 300.00673 * 9 7 2 31 31 H 1.08996 * 109.48803 * 67.29875 * 11 10 9 32 32 H 1.08996 * 109.49293 * 307.21149 * 11 10 9 33 33 H 1.09000 * 109.62896 * 186.45889 * 12 11 10 34 34 H 1.09003 * 109.62724 * 65.87721 * 12 11 10 35 35 H 1.09005 * 109.46903 * 59.99735 * 16 14 13 36 36 H 1.09000 * 109.47366 * 299.99987 * 16 14 13 37 37 H 1.08994 * 109.46715 * 59.99802 * 17 16 14 38 38 H 1.08995 * 109.46839 * 300.00037 * 17 16 14 39 39 H 0.97007 * 120.00144 * 359.97438 * 18 17 16 40 40 H 1.08002 * 126.64113 * 359.92504 * 22 21 19 41 41 H 1.07998 * 126.43957 * 179.77000 * 23 22 21 42 42 H 1.07992 * 125.61842 * 180.11453 * 24 23 22 43 43 H 1.08993 * 109.62925 * 68.25972 * 26 13 12 44 44 H 1.09007 * 109.62615 * 188.83698 * 26 13 12 45 45 H 1.08999 * 109.49619 * 292.70154 * 27 10 9 46 46 H 1.09002 * 109.49789 * 52.78424 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 1.5212 -4.8935 0.2376 12 6 2.5639 -6.0032 0.4104 13 7 3.4618 -5.9862 -0.7544 14 6 3.7121 -7.1123 -1.4514 15 8 3.1946 -8.1580 -1.1203 16 6 4.6350 -7.0721 -2.6420 17 6 4.7471 -8.4726 -3.2479 18 7 5.6447 -8.4336 -4.4050 19 6 5.8952 -9.5596 -5.1019 20 8 5.3759 -10.6090 -4.7696 21 6 6.7933 -9.5205 -6.2606 22 6 7.1314 -10.5822 -7.0499 23 6 8.0106 -10.0934 -8.0288 24 6 8.1623 -8.7699 -7.8020 25 8 7.4296 -8.4291 -6.7339 26 6 4.0839 -4.7089 -1.1348 27 6 2.9768 -3.6490 -1.2504 28 1 -0.4850 0.8400 0.0004 29 1 0.6241 -2.5567 -0.8903 30 1 0.6247 -2.5572 0.8896 31 1 0.8798 -5.1264 -0.6123 32 1 0.9161 -4.8191 1.1411 33 1 2.0633 -6.9694 0.4729 34 1 3.1395 -5.8264 1.3190 35 1 5.6216 -6.7333 -2.3257 36 1 4.2364 -6.3841 -3.3876 37 1 3.7607 -8.8116 -3.5640 38 1 5.1459 -9.1601 -2.5021 39 1 6.0583 -7.5971 -4.6701 40 1 6.7919 -11.6015 -6.9394 41 1 8.4764 -10.6668 -8.8165 42 1 8.7766 -8.0985 -8.3835 43 1 4.8028 -4.4102 -0.3720 44 1 4.5887 -4.8191 -2.0947 45 1 2.3150 -3.8993 -2.0796 46 1 3.4273 -2.6721 -1.4261 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602210794.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:50 Heat of formation + Delta-G solvation = -69.887830 kcal Electronic energy + Delta-G solvation = -27868.961657 eV Core-core repulsion = 23759.477359 eV Total energy + Delta-G solvation = -4109.484298 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.63110 -41.34610 -40.53154 -39.02946 -36.47996 -35.97558 -34.41866 -34.05107 -32.87250 -31.84871 -30.61487 -29.88012 -27.40514 -25.77827 -24.61401 -23.93674 -23.32575 -22.66729 -21.96472 -21.44141 -20.01122 -19.37400 -18.48038 -18.39954 -17.47979 -17.35985 -17.01093 -16.86867 -16.68538 -16.52958 -16.02784 -15.96583 -15.52140 -15.30781 -15.15256 -14.86572 -14.59897 -14.17555 -14.08173 -13.96403 -13.93390 -13.55745 -13.54881 -13.10375 -12.90610 -12.73560 -12.59414 -12.55846 -12.36097 -12.25459 -12.10863 -11.75778 -11.62438 -11.27111 -11.04941 -10.89634 -10.60960 -10.39832 -9.77334 -9.64626 -9.05159 -8.19086 -6.29637 0.00945 1.43072 1.44513 1.46252 1.53331 1.56078 1.57519 1.88960 2.05686 2.27580 2.42231 3.13604 3.24088 3.45817 3.66134 3.77312 3.95910 4.00781 4.01037 4.06254 4.13665 4.24437 4.30240 4.40141 4.46865 4.60273 4.62173 4.74484 4.77118 4.83244 4.86943 4.92455 4.96278 4.97038 5.04155 5.15573 5.21566 5.23915 5.39678 5.44595 5.64997 5.82043 6.03195 6.23576 6.35725 6.43506 6.56567 6.86699 6.93813 7.08445 7.40571 8.92193 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015907 B = 0.001966 C = 0.001786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.836138 B =14237.413010 C =15675.706710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.002 4.002 3 Si 0.972 3.028 4 H -0.271 1.271 5 H -0.289 1.289 6 H -0.261 1.261 7 C -0.519 4.519 8 H 0.072 0.928 9 C 0.207 3.793 10 N -0.538 5.538 11 C 0.044 3.956 12 C 0.127 3.873 13 N -0.610 5.610 14 C 0.516 3.484 15 O -0.587 6.587 16 C -0.141 4.141 17 C 0.141 3.859 18 N -0.704 5.704 19 C 0.599 3.401 20 O -0.564 6.564 21 C -0.109 4.109 22 C -0.127 4.127 23 C -0.237 4.237 24 C 0.015 3.985 25 O -0.167 6.167 26 C 0.118 3.882 27 C 0.046 3.954 28 H 0.263 0.737 29 H -0.041 1.041 30 H 0.002 0.998 31 H 0.013 0.987 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.139 0.861 36 H 0.129 0.871 37 H 0.057 0.943 38 H 0.064 0.936 39 H 0.421 0.579 40 H 0.155 0.845 41 H 0.182 0.818 42 H 0.256 0.744 43 H 0.089 0.911 44 H 0.127 0.873 45 H 0.016 0.984 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.201 -14.468 -15.518 29.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.200 4.200 3 Si 0.797 3.203 4 H -0.197 1.197 5 H -0.214 1.214 6 H -0.185 1.185 7 C -0.557 4.557 8 H 0.090 0.910 9 C 0.080 3.920 10 N -0.263 5.263 11 C -0.086 4.086 12 C 0.003 3.997 13 N -0.343 5.343 14 C 0.305 3.695 15 O -0.467 6.467 16 C -0.180 4.180 17 C 0.017 3.983 18 N -0.355 5.355 19 C 0.387 3.613 20 O -0.445 6.445 21 C -0.161 4.161 22 C -0.148 4.148 23 C -0.256 4.256 24 C -0.055 4.055 25 O -0.062 6.062 26 C -0.004 4.004 27 C -0.083 4.083 28 H 0.072 0.928 29 H -0.024 1.024 30 H 0.020 0.980 31 H 0.032 0.968 32 H 0.096 0.904 33 H 0.105 0.895 34 H 0.101 0.899 35 H 0.157 0.843 36 H 0.146 0.854 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.259 0.741 40 H 0.173 0.827 41 H 0.199 0.801 42 H 0.272 0.728 43 H 0.107 0.893 44 H 0.145 0.855 45 H 0.034 0.966 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 19.691 -15.246 -14.539 28.837 hybrid contribution -1.042 0.913 -0.547 1.489 sum 18.649 -14.333 -15.086 27.943 Atomic orbital electron populations 1.70105 1.07947 1.27880 1.51861 1.25971 0.95692 1.03427 0.94874 0.85337 0.78579 0.78002 0.78420 1.19688 1.21445 1.18459 1.21453 0.93896 0.90527 1.49837 0.90958 1.19388 0.90165 0.89085 0.93324 1.62013 1.26931 1.02327 1.35060 1.22421 0.95662 0.90205 1.00280 1.21582 0.91428 0.98076 0.88569 1.48317 1.46564 1.09339 1.30062 1.20917 0.81803 0.82470 0.84292 1.90708 1.53908 1.31524 1.70597 1.21816 1.02131 0.98176 0.95910 1.20903 0.93615 0.96921 0.86842 1.45681 1.48186 1.11394 1.30269 1.16778 0.79713 0.83944 0.80853 1.90890 1.52678 1.31825 1.69119 1.21709 1.05623 0.87132 1.01641 1.22271 0.97948 0.99861 0.94751 1.22225 1.03967 0.95925 1.03442 1.25406 0.95107 0.97466 0.87499 1.84052 1.48647 1.34727 1.38815 1.22208 0.94435 0.80307 1.03423 1.22516 0.95741 1.00417 0.89649 0.92818 1.02362 0.97973 0.96828 0.90386 0.89519 0.89900 0.84343 0.85354 0.92434 0.91802 0.74058 0.82692 0.80103 0.72795 0.89291 0.85511 0.96583 0.89319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.26 13.29 21.45 0.28 -54.98 16 2 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 3 Si 0.97 42.15 29.54 68.60 2.03 44.18 16 4 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 5 H -0.29 -12.52 7.11 99.48 0.71 -11.82 16 6 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 7 C -0.52 -27.70 8.41 25.60 0.22 -27.48 16 8 H 0.07 3.66 7.12 -2.91 -0.02 3.64 16 9 C 0.21 10.60 4.72 85.56 0.40 11.01 16 10 N -0.54 -21.56 4.62 -898.90 -4.15 -25.72 16 11 C 0.04 1.53 5.62 86.38 0.49 2.02 16 12 C 0.13 3.69 6.60 86.35 0.57 4.26 16 13 N -0.61 -15.59 3.00 -817.04 -2.45 -18.04 16 14 C 0.52 12.89 7.71 87.66 0.68 13.56 16 15 O -0.59 -19.68 15.43 -3.03 -0.05 -19.73 16 16 C -0.14 -2.07 4.18 29.85 0.12 -1.95 16 17 C 0.14 2.81 4.96 86.38 0.43 3.24 16 18 N -0.70 -11.65 5.55 -467.12 -2.59 -14.24 16 19 C 0.60 13.53 7.79 86.44 0.67 14.20 16 20 O -0.56 -17.50 16.87 -4.35 -0.07 -17.58 16 21 C -0.11 -1.98 7.13 24.07 0.17 -1.81 16 22 C -0.13 -2.07 10.62 22.39 0.24 -1.83 16 23 C -0.24 -2.22 10.87 22.07 0.24 -1.98 16 24 C 0.01 0.10 12.08 67.10 0.81 0.91 16 25 O -0.17 -2.13 10.40 -5.08 -0.05 -2.18 16 26 C 0.12 2.58 6.53 86.50 0.57 3.14 16 27 C 0.05 1.49 5.47 86.54 0.47 1.96 16 28 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 29 H -0.04 -2.34 8.12 -2.39 -0.02 -2.36 16 30 H 0.00 0.12 7.97 -2.39 -0.02 0.10 16 31 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.08 2.76 7.99 -2.39 -0.02 2.74 16 33 H 0.09 2.59 7.06 -2.39 -0.02 2.58 16 34 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.14 1.13 7.99 -2.38 -0.02 1.11 16 36 H 0.13 1.33 7.67 -2.39 -0.02 1.31 16 37 H 0.06 1.44 8.10 -2.39 -0.02 1.42 16 38 H 0.06 1.52 8.10 -2.39 -0.02 1.50 16 39 H 0.42 4.14 8.23 -92.70 -0.76 3.37 16 40 H 0.16 2.55 8.06 -2.91 -0.02 2.52 16 41 H 0.18 0.70 8.06 -2.91 -0.02 0.68 16 42 H 0.26 -0.84 8.06 -2.91 -0.02 -0.86 16 43 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.13 1.61 6.02 -2.38 -0.01 1.60 16 45 H 0.02 0.55 8.14 -2.39 -0.02 0.53 16 46 H 0.09 3.06 6.67 -2.39 -0.02 3.04 16 Total: -1.00 -79.41 384.26 -0.29 -79.70 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: 0.24 Total: 8.98 kcal Atomic # 6 Polarization: 13.07 SS G_CDS: 6.54 Total: 19.61 kcal Atomic # 7 Polarization: -104.06 SS G_CDS: -8.91 Total: -112.97 kcal Atomic # 8 Polarization: -39.31 SS G_CDS: -0.17 Total: -39.49 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal Total: -79.41 -0.29 -79.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602210794.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.808 kcal (2) G-P(sol) polarization free energy of solvation -79.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds