Wall clock time and date at job start Tue Mar 31 2020 18:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 119.99892 * 2 1 4 4 H 1.48502 * 109.46940 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46979 * 299.99869 * 3 2 1 6 6 H 1.48494 * 109.46957 * 59.99790 * 3 2 1 7 7 C 1.37876 * 119.99968 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99977 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00109 * 359.97438 * 7 2 1 10 10 N 1.46896 * 109.47100 * 179.97438 * 9 7 2 11 11 C 1.46900 * 111.00057 * 169.99941 * 10 9 7 12 12 C 1.53241 * 109.34178 * 187.25350 * 11 10 9 13 13 N 1.47077 * 108.52152 * 306.17435 * 12 11 10 14 14 C 1.34780 * 120.88091 * 231.18716 * 13 12 11 15 15 O 1.21347 * 120.00035 * 181.53820 * 14 13 12 16 16 C 1.49455 * 119.99958 * 1.53644 * 14 13 12 17 17 O 1.21351 * 119.99715 * 353.51989 * 16 14 13 18 18 N 1.34773 * 120.00061 * 173.51554 * 16 14 13 19 19 C 1.46500 * 119.99967 * 179.97438 * 18 16 14 20 20 C 1.52999 * 109.46961 * 180.02562 * 19 18 16 21 21 C 1.50706 * 109.46808 * 180.02562 * 20 19 18 22 22 C 1.34512 * 125.78632 * 90.00161 * 21 20 19 23 23 C 1.41390 * 106.83740 * 180.02562 * 22 21 20 24 24 C 1.34515 * 106.84100 * 359.97438 * 23 22 21 25 25 O 1.34300 * 108.41975 * 359.73989 * 24 23 22 26 26 C 1.47073 * 118.23876 * 51.45459 * 13 12 11 27 27 C 1.46902 * 111.00228 * 294.30481 * 10 9 7 28 28 H 0.96996 * 119.99911 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.46833 * 59.99925 * 9 7 2 30 30 H 1.09000 * 109.46933 * 300.00375 * 9 7 2 31 31 H 1.09002 * 109.49337 * 67.29678 * 11 10 9 32 32 H 1.08996 * 109.49343 * 307.21558 * 11 10 9 33 33 H 1.08998 * 109.62899 * 186.46076 * 12 11 10 34 34 H 1.08999 * 109.62671 * 65.88305 * 12 11 10 35 35 H 0.96999 * 120.00134 * 0.02562 * 18 16 14 36 36 H 1.09001 * 109.47171 * 60.00610 * 19 18 16 37 37 H 1.08998 * 109.46991 * 300.00174 * 19 18 16 38 38 H 1.08998 * 109.46975 * 299.99651 * 20 19 18 39 39 H 1.08993 * 109.47391 * 60.00237 * 20 19 18 40 40 H 1.07994 * 126.58859 * 0.02812 * 22 21 20 41 41 H 1.08003 * 126.58001 * 179.97438 * 23 22 21 42 42 H 1.07995 * 125.79096 * 180.02562 * 24 23 22 43 43 H 1.08998 * 109.63290 * 68.25411 * 26 13 12 44 44 H 1.09007 * 109.63197 * 188.83482 * 26 13 12 45 45 H 1.09002 * 109.49271 * 292.70548 * 27 10 9 46 46 H 1.09000 * 109.49101 * 52.78331 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0017 10 7 2.2057 -3.6157 0.0015 11 6 1.5214 -4.8934 0.2407 12 6 2.5641 -6.0030 0.4132 13 7 3.4611 -5.9865 -0.7523 14 6 3.7109 -7.1130 -1.4489 15 8 4.4753 -7.0868 -2.3910 16 6 3.0464 -8.3943 -1.0612 17 8 2.3755 -8.4484 -0.0514 18 7 3.1922 -9.4895 -1.8329 19 6 2.5412 -10.7456 -1.4525 20 6 2.8654 -11.8225 -2.4898 21 6 2.1953 -13.1145 -2.0988 22 6 0.9615 -13.5035 -2.4672 23 6 0.7386 -14.7697 -1.8788 24 6 1.8497 -15.0789 -1.1866 25 8 2.7310 -14.0754 -1.3284 26 6 4.0829 -4.7095 -1.1338 27 6 2.9759 -3.6496 -1.2490 28 1 -0.4850 0.8400 -0.0004 29 1 0.6241 -2.5575 -0.8880 30 1 0.6247 -2.5563 0.8919 31 1 0.8792 -5.1267 -0.6085 32 1 0.9169 -4.8186 1.1446 33 1 2.0636 -6.9692 0.4765 34 1 3.1404 -5.8259 1.3213 35 1 3.7287 -9.4463 -2.6399 36 1 1.4624 -10.5968 -1.4078 37 1 2.9052 -11.0619 -0.4750 38 1 2.5017 -11.5064 -3.4675 39 1 3.9442 -11.9713 -2.5341 40 1 0.2732 -12.9543 -3.0924 41 1 -0.1528 -15.3730 -1.9680 42 1 2.0083 -15.9829 -0.6175 43 1 4.8025 -4.4104 -0.3716 44 1 4.5871 -4.8201 -2.0939 45 1 2.3134 -3.9002 -2.0775 46 1 3.4261 -2.6728 -1.4254 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602224422.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:40 Heat of formation + Delta-G solvation = -47.496449 kcal Electronic energy + Delta-G solvation = -28066.720666 eV Core-core repulsion = 23958.207331 eV Total energy + Delta-G solvation = -4108.513335 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.47575 -42.07682 -40.06617 -39.01112 -37.13457 -35.90725 -34.40520 -34.03739 -33.08689 -32.17672 -30.25284 -29.13605 -27.54552 -26.06813 -24.68287 -24.05140 -23.29189 -22.66960 -22.07095 -21.37020 -20.66452 -18.90611 -18.44606 -18.32995 -17.98948 -17.33207 -17.19931 -16.84976 -16.58095 -16.18588 -16.07853 -15.99489 -15.58590 -15.46343 -15.23147 -15.03759 -14.80606 -14.30245 -14.10858 -13.73005 -13.64841 -13.52628 -13.41615 -13.20208 -13.13841 -12.82897 -12.74786 -12.58779 -12.38271 -12.34014 -12.22466 -12.04399 -11.75602 -11.33729 -10.84328 -10.63697 -10.44219 -10.22463 -9.92451 -9.39623 -9.08290 -8.20834 -6.31089 0.24539 0.74706 1.18686 1.42268 1.43153 1.56569 1.71931 2.03043 2.08090 2.39120 2.43593 3.11515 3.17306 3.24861 3.79544 3.81191 3.93355 3.99394 4.01970 4.16015 4.20476 4.29411 4.31327 4.40582 4.44710 4.53046 4.66531 4.72702 4.81847 4.89078 4.90974 4.96603 4.99646 5.07096 5.10125 5.18055 5.24134 5.26093 5.37977 5.61791 5.63531 5.89950 6.02325 6.13335 6.21488 6.27475 6.55515 6.61083 6.83789 6.85205 7.38846 8.90583 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.030315 B = 0.001822 C = 0.001765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.418195 B =15362.495583 C =15856.681704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.001 3.999 3 Si 0.971 3.029 4 H -0.261 1.261 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.522 4.522 8 H 0.068 0.932 9 C 0.207 3.793 10 N -0.541 5.541 11 C 0.041 3.959 12 C 0.073 3.927 13 N -0.577 5.577 14 C 0.504 3.496 15 O -0.545 6.545 16 C 0.516 3.484 17 O -0.523 6.523 18 N -0.682 5.682 19 C 0.123 3.877 20 C -0.042 4.042 21 C -0.028 4.028 22 C -0.214 4.214 23 C -0.231 4.231 24 C -0.042 4.042 25 O -0.193 6.193 26 C 0.121 3.879 27 C 0.055 3.945 28 H 0.264 0.736 29 H -0.040 1.040 30 H 0.008 0.992 31 H 0.017 0.983 32 H 0.084 0.916 33 H 0.160 0.840 34 H 0.079 0.921 35 H 0.424 0.576 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.122 0.878 39 H 0.103 0.897 40 H 0.160 0.840 41 H 0.164 0.836 42 H 0.233 0.767 43 H 0.088 0.912 44 H 0.102 0.898 45 H 0.014 0.986 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.973 -30.016 -5.214 31.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.197 4.197 3 Si 0.796 3.204 4 H -0.185 1.185 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.561 4.561 8 H 0.086 0.914 9 C 0.081 3.919 10 N -0.266 5.266 11 C -0.088 4.088 12 C -0.048 4.048 13 N -0.309 5.309 14 C 0.287 3.713 15 O -0.424 6.424 16 C 0.297 3.703 17 O -0.401 6.401 18 N -0.335 5.335 19 C 0.000 4.000 20 C -0.079 4.079 21 C -0.078 4.078 22 C -0.233 4.233 23 C -0.250 4.250 24 C -0.109 4.109 25 O -0.090 6.090 26 C -0.001 4.001 27 C -0.074 4.074 28 H 0.073 0.927 29 H -0.022 1.022 30 H 0.026 0.974 31 H 0.035 0.965 32 H 0.102 0.898 33 H 0.176 0.824 34 H 0.098 0.902 35 H 0.262 0.738 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.141 0.859 39 H 0.122 0.878 40 H 0.177 0.823 41 H 0.181 0.819 42 H 0.249 0.751 43 H 0.107 0.893 44 H 0.120 0.880 45 H 0.032 0.968 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 6.373 -29.857 -4.496 30.859 hybrid contribution -0.831 1.065 -0.922 1.636 sum 5.542 -28.792 -5.418 29.817 Atomic orbital electron populations 1.70098 1.07802 1.27849 1.51810 1.25934 0.95732 1.03283 0.94789 0.85303 0.79077 0.78464 0.77576 1.18457 1.20589 1.20561 1.21497 0.93793 0.90817 1.49959 0.91423 1.19397 0.90090 0.88881 0.93552 1.62049 1.27230 1.03010 1.34268 1.22507 0.95901 0.89822 1.00564 1.23313 0.91555 1.03095 0.86815 1.48225 1.45086 1.07922 1.29709 1.20172 0.82823 0.85296 0.83013 1.90723 1.37076 1.85720 1.28868 1.19964 0.81211 0.85195 0.83921 1.90364 1.40702 1.82933 1.26118 1.45642 1.51193 1.09067 1.27595 1.21513 0.98392 0.81214 0.98846 1.20237 1.02571 0.85646 0.99491 1.22294 0.94654 0.92455 0.98387 1.21977 0.97273 0.98171 1.05915 1.22208 1.01341 0.98446 1.03040 1.24753 0.88719 0.93643 1.03819 1.84019 1.42741 1.26063 1.56162 1.21991 0.94856 0.80552 1.02675 1.22384 0.95363 0.99649 0.89994 0.92718 1.02246 0.97394 0.96475 0.89806 0.82423 0.90233 0.73786 0.90429 0.90992 0.85939 0.87836 0.82263 0.81857 0.75069 0.89333 0.88016 0.96771 0.89556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.27 13.29 21.45 0.28 -55.98 16 2 C 0.00 0.03 5.46 84.65 0.46 0.50 16 3 Si 0.97 43.99 29.54 68.60 2.03 46.01 16 4 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 5 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 6 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 7 C -0.52 -29.30 8.41 25.60 0.22 -29.09 16 8 H 0.07 3.68 7.13 -2.91 -0.02 3.66 16 9 C 0.21 11.07 4.72 85.56 0.40 11.47 16 10 N -0.54 -23.39 4.62 -898.87 -4.15 -27.54 16 11 C 0.04 1.50 5.62 86.38 0.49 1.99 16 12 C 0.07 2.21 6.35 86.35 0.55 2.76 16 13 N -0.58 -17.45 3.00 -818.63 -2.46 -19.91 16 14 C 0.50 13.99 7.77 87.27 0.68 14.67 16 15 O -0.55 -16.23 15.95 -3.24 -0.05 -16.28 16 16 C 0.52 12.09 7.81 87.27 0.68 12.77 16 17 O -0.52 -14.05 13.03 -3.25 -0.04 -14.10 16 18 N -0.68 -10.83 5.55 -464.41 -2.58 -13.40 16 19 C 0.12 1.61 5.66 86.38 0.49 2.10 16 20 C -0.04 -0.37 5.86 29.85 0.17 -0.19 16 21 C -0.03 -0.37 6.58 24.83 0.16 -0.21 16 22 C -0.21 -2.83 10.81 22.19 0.24 -2.59 16 23 C -0.23 -2.79 10.91 22.19 0.24 -2.55 16 24 C -0.04 -0.47 12.09 66.97 0.81 0.34 16 25 O -0.19 -2.96 10.65 -2.48 -0.03 -2.99 16 26 C 0.12 3.79 6.62 86.50 0.57 4.36 16 27 C 0.06 2.13 5.47 86.54 0.47 2.61 16 28 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 29 H -0.04 -2.35 8.12 -2.39 -0.02 -2.37 16 30 H 0.01 0.46 7.97 -2.39 -0.02 0.44 16 31 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.08 3.02 7.99 -2.39 -0.02 3.00 16 33 H 0.16 4.58 3.92 -75.36 -0.30 4.29 16 34 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 35 H 0.42 5.26 7.96 -92.71 -0.74 4.53 16 36 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.16 1.63 8.06 -2.91 -0.02 1.61 16 41 H 0.16 1.32 8.06 -2.91 -0.02 1.30 16 42 H 0.23 0.77 8.06 -2.91 -0.02 0.75 16 43 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 44 H 0.10 2.97 7.07 -2.38 -0.02 2.96 16 45 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 46 H 0.09 3.54 6.67 -2.39 -0.02 3.52 16 Total: -1.00 -71.47 381.53 -0.38 -71.85 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -0.02 Total: 13.41 kcal Atomic # 6 Polarization: 12.29 SS G_CDS: 6.64 Total: 18.93 kcal Atomic # 7 Polarization: -107.93 SS G_CDS: -8.90 Total: -116.83 kcal Atomic # 8 Polarization: -33.24 SS G_CDS: -0.12 Total: -33.36 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.01 kcal Total: -71.47 -0.38 -71.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602224422.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.352 kcal (2) G-P(sol) polarization free energy of solvation -71.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds