Wall clock time and date at job start Tue Mar 31 2020 18:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86797 * 120.00001 * 2 1 4 4 H 1.48498 * 109.47165 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47119 * 299.99941 * 3 2 1 6 6 H 1.48503 * 109.47261 * 59.99879 * 3 2 1 7 7 C 1.38817 * 119.99909 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99749 * 164.85435 * 7 2 1 9 9 N 1.36936 * 119.99826 * 344.85497 * 7 2 1 10 10 C 1.46926 * 120.62949 * 151.49921 * 9 7 2 11 11 C 1.53198 * 108.89546 * 126.45578 * 10 9 7 12 12 C 1.53042 * 109.30630 * 54.56595 * 11 10 9 13 13 N 1.46503 * 109.45534 * 178.61300 * 12 11 10 14 14 C 1.34777 * 119.99864 * 204.99608 * 13 12 11 15 15 O 1.21591 * 120.00180 * 0.02562 * 14 13 12 16 16 N 1.34777 * 120.00301 * 179.97438 * 14 13 12 17 17 C 1.46498 * 120.00392 * 175.57773 * 16 14 13 18 18 C 1.53000 * 112.85199 * 293.61424 * 17 16 14 19 19 F 1.39897 * 109.47077 * 62.66186 * 18 17 16 20 20 F 1.39898 * 109.47054 * 182.66670 * 18 17 16 21 21 F 1.39904 * 109.46674 * 302.66441 * 18 17 16 22 22 C 1.53776 * 113.61313 * 162.41440 * 17 16 14 23 23 C 1.54056 * 86.98635 * 270.83943 * 22 17 16 24 24 C 1.53784 * 87.07714 * 334.56951 * 23 22 17 25 25 C 1.53034 * 109.53993 * 298.63422 * 12 11 10 26 26 C 1.46962 * 120.65888 * 331.31066 * 9 7 2 27 27 H 0.96994 * 120.00118 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.58494 * 6.60115 * 10 9 7 29 29 H 1.08997 * 109.58895 * 246.31769 * 10 9 7 30 30 H 1.08995 * 109.49641 * 174.51326 * 11 10 9 31 31 H 1.09002 * 109.49752 * 294.61709 * 11 10 9 32 32 H 1.08998 * 109.46316 * 58.64256 * 12 11 10 33 33 H 0.96999 * 120.00185 * 25.00122 * 13 12 11 34 34 H 0.97003 * 119.99552 * 355.58407 * 16 14 13 35 35 H 1.08993 * 113.61859 * 25.43256 * 22 17 16 36 36 H 1.09001 * 113.61455 * 156.33790 * 22 17 16 37 37 H 1.08998 * 113.61878 * 220.02091 * 23 22 17 38 38 H 1.09002 * 113.68742 * 89.12948 * 23 22 17 39 39 H 1.08999 * 113.61348 * 270.87966 * 24 23 22 40 40 H 1.09002 * 113.61422 * 139.97385 * 24 23 22 41 41 H 1.09005 * 109.50101 * 181.31997 * 25 12 11 42 42 H 1.09006 * 109.49622 * 301.38071 * 25 12 11 43 43 H 1.09003 * 109.46462 * 113.75014 * 26 9 7 44 44 H 1.09004 * 109.70786 * 353.47232 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0622 -1.2185 -0.2438 9 7 1.3612 -2.3673 0.3109 10 6 1.8154 -3.6486 -0.2466 11 6 2.0419 -4.6369 0.9018 12 6 0.7679 -4.7344 1.7442 13 7 0.9698 -5.7037 2.8240 14 6 -0.0887 -6.3344 3.3701 15 8 -1.2112 -6.0993 2.9662 16 7 0.0971 -7.2265 4.3632 17 6 -1.0584 -7.8398 5.0226 18 6 -1.8899 -6.8339 5.8212 19 9 -2.4177 -5.8719 4.9533 20 9 -2.9350 -7.5021 6.4680 21 9 -1.0771 -6.2080 6.7724 22 6 -0.7136 -9.1157 5.8086 23 6 -0.9779 -9.8927 4.5048 24 6 -1.8974 -8.7312 4.0918 25 6 0.4441 -3.3639 2.3431 26 6 0.1996 -2.3612 1.2111 27 1 -0.4850 0.8400 0.0004 28 1 2.7484 -3.5003 -0.7904 29 1 1.0568 -4.0422 -0.9231 30 1 2.2848 -5.6183 0.4946 31 1 2.8646 -4.2875 1.5256 32 1 -0.0600 -5.0599 1.1142 33 1 1.8653 -5.8914 3.1460 34 1 0.9959 -7.4623 4.6413 35 1 0.3238 -9.1572 6.1405 36 1 -1.4230 -9.3437 6.6041 37 1 -1.5054 -10.8343 4.6569 38 1 -0.0969 -9.9985 3.8718 39 1 -2.9299 -8.8542 4.4188 40 1 -1.8150 -8.4624 3.0386 41 1 -0.4501 -3.4392 2.9619 42 1 1.2817 -3.0267 2.9539 43 1 -0.6926 -2.6485 0.6548 44 1 0.0640 -1.3638 1.6294 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602991635.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:50 Heat of formation + Delta-G solvation = -135.329499 kcal Electronic energy + Delta-G solvation = -30821.202902 eV Core-core repulsion = 26167.024101 eV Total energy + Delta-G solvation = -4654.178802 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.156 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.05783 -47.66312 -47.38463 -40.68045 -38.87540 -37.21014 -34.37211 -33.49749 -31.92207 -29.99604 -29.42178 -28.00589 -26.34318 -25.02229 -23.45840 -22.28461 -22.14918 -20.84981 -19.96236 -19.48281 -18.43479 -18.37963 -18.21398 -17.92169 -16.77782 -16.16336 -15.53303 -14.97357 -14.81530 -14.61323 -14.48185 -14.35239 -14.15940 -14.00327 -13.76633 -13.61628 -13.54827 -13.47096 -13.22054 -12.98462 -12.86274 -12.68638 -12.46773 -12.33764 -11.47913 -11.41350 -11.33404 -11.10186 -11.01650 -10.88290 -10.73206 -10.36818 -10.19884 -10.10040 -9.96664 -9.74770 -9.54091 -9.41122 -8.67057 -8.40062 -6.65595 -5.76089 -3.20758 2.31992 2.66765 3.23182 3.38549 3.46004 3.47938 3.48046 3.75557 3.83991 4.06171 4.24844 4.42532 4.50685 4.58707 4.71821 5.12820 5.18574 5.30412 5.38565 5.42413 5.46159 5.46919 5.66166 5.70748 5.73207 5.84069 6.09651 6.17318 6.24251 6.34220 6.45494 6.56574 6.66867 6.74286 6.87457 6.95251 7.03132 7.42644 7.73177 7.81634 8.00475 8.47602 8.64695 9.23232 9.86110 10.42915 11.32229 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.022647 B = 0.002847 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.075729 B = 9833.477353 C =10459.375034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.002 3.998 3 Si 0.903 3.097 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.254 4.254 8 H 0.066 0.934 9 N -0.593 5.593 10 C 0.149 3.851 11 C -0.138 4.138 12 C 0.169 3.831 13 N -0.735 5.735 14 C 0.698 3.302 15 O -0.562 6.562 16 N -0.726 5.726 17 C 0.125 3.875 18 C 0.444 3.556 19 F -0.155 7.155 20 F -0.184 7.184 21 F -0.187 7.187 22 C -0.130 4.130 23 C -0.132 4.132 24 C -0.130 4.130 25 C -0.147 4.147 26 C 0.174 3.826 27 H 0.254 0.746 28 H 0.058 0.942 29 H 0.020 0.980 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.083 0.917 33 H 0.390 0.610 34 H 0.404 0.596 35 H 0.087 0.913 36 H 0.108 0.892 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.099 0.901 40 H 0.095 0.905 41 H 0.054 0.946 42 H 0.053 0.947 43 H 0.021 0.979 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.540 -22.041 12.641 25.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.196 4.196 3 Si 0.733 3.267 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.384 4.384 8 H 0.083 0.917 9 N -0.316 5.316 10 C 0.022 3.978 11 C -0.178 4.178 12 C 0.066 3.934 13 N -0.388 5.388 14 C 0.397 3.603 15 O -0.437 6.437 16 N -0.384 5.384 17 C 0.034 3.966 18 C 0.388 3.612 19 F -0.136 7.136 20 F -0.166 7.166 21 F -0.168 7.168 22 C -0.167 4.167 23 C -0.169 4.169 24 C -0.168 4.168 25 C -0.188 4.188 26 C 0.048 3.952 27 H 0.064 0.936 28 H 0.076 0.924 29 H 0.038 0.962 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.101 0.899 33 H 0.223 0.777 34 H 0.239 0.761 35 H 0.106 0.894 36 H 0.126 0.874 37 H 0.100 0.900 38 H 0.106 0.894 39 H 0.117 0.883 40 H 0.114 0.886 41 H 0.073 0.927 42 H 0.071 0.929 43 H 0.039 0.961 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.622 -21.584 12.215 24.809 hybrid contribution 1.137 1.015 0.619 1.644 sum 0.515 -20.570 12.834 24.250 Atomic orbital electron populations 1.70026 1.05250 1.25419 1.53841 1.25093 0.95321 0.98436 1.00781 0.86221 0.79263 0.83977 0.77275 1.20285 1.21704 1.21584 1.19209 0.91972 0.84524 1.42652 0.91651 1.44106 1.34297 1.01851 1.51322 1.20828 0.98005 0.86739 0.92245 1.22350 0.96560 0.99687 0.99237 1.20949 0.98609 0.87540 0.86308 1.45525 1.07637 1.45147 1.40487 1.16041 0.85714 0.78866 0.79641 1.91013 1.21901 1.67221 1.63586 1.44650 1.07572 1.47331 1.38798 1.22178 0.89148 0.89666 0.95617 1.20940 0.79231 0.82446 0.78598 1.93350 1.87018 1.64956 1.68320 1.93133 1.60127 1.80524 1.82804 1.93164 1.72864 1.84172 1.66600 1.23334 1.03907 0.91355 0.98146 1.22845 1.00336 0.97785 0.95925 1.23273 0.98705 0.93350 1.01488 1.22583 1.00471 0.95279 1.00435 1.20769 0.88404 0.97855 0.88200 0.93617 0.92375 0.96187 0.92664 0.91915 0.89934 0.77672 0.76074 0.89427 0.87415 0.90030 0.89370 0.88267 0.88600 0.92729 0.92850 0.96125 0.89201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.55 11.12 55.49 0.62 -25.94 16 2 C 0.00 0.07 4.96 -17.43 -0.09 -0.02 16 3 Si 0.90 21.79 29.58 -169.99 -5.03 16.76 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 7 C -0.25 -6.96 9.59 -15.06 -0.14 -7.10 16 8 H 0.07 1.75 7.87 -52.49 -0.41 1.33 16 9 N -0.59 -14.86 3.00 -172.29 -0.52 -15.38 16 10 C 0.15 3.05 6.51 -3.71 -0.02 3.02 16 11 C -0.14 -2.25 5.55 -26.61 -0.15 -2.40 16 12 C 0.17 2.92 2.41 -67.89 -0.16 2.76 16 13 N -0.73 -9.99 5.08 -58.63 -0.30 -10.29 16 14 C 0.70 10.07 7.93 -86.92 -0.69 9.38 16 15 O -0.56 -10.44 12.42 5.29 0.07 -10.38 16 16 N -0.73 -7.39 5.11 -51.65 -0.26 -7.65 16 17 C 0.13 1.25 0.68 -131.01 -0.09 1.16 16 18 C 0.44 5.69 2.69 37.16 0.10 5.79 16 19 F -0.16 -2.62 14.40 2.25 0.03 -2.59 16 20 F -0.18 -2.13 15.70 2.25 0.04 -2.09 16 21 F -0.19 -2.45 17.27 2.25 0.04 -2.42 16 22 C -0.13 -0.79 7.28 -25.78 -0.19 -0.98 16 23 C -0.13 -0.79 8.00 -25.77 -0.21 -1.00 16 24 C -0.13 -1.21 6.83 -25.91 -0.18 -1.39 16 25 C -0.15 -3.00 5.65 -26.62 -0.15 -3.15 16 26 C 0.17 4.30 5.28 -3.69 -0.02 4.28 16 27 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 28 H 0.06 1.14 7.93 -51.93 -0.41 0.73 16 29 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.08 1.61 7.58 -51.93 -0.39 1.22 16 33 H 0.39 4.05 8.62 -40.82 -0.35 3.70 16 34 H 0.40 2.76 8.68 -40.82 -0.35 2.41 16 35 H 0.09 0.39 8.09 -51.93 -0.42 -0.03 16 36 H 0.11 0.59 7.40 -51.93 -0.38 0.21 16 37 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.10 0.88 7.58 -51.93 -0.39 0.48 16 40 H 0.10 1.12 7.17 -51.93 -0.37 0.75 16 41 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 42 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.09 2.49 6.05 -51.93 -0.31 2.18 16 LS Contribution 358.81 15.07 5.41 5.41 Total: -1.00 -33.05 358.81 -8.22 -41.27 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -6.33 Total: 2.94 kcal Atomic # 6 Polarization: 12.34 SS G_CDS: -1.99 Total: 10.36 kcal Atomic # 7 Polarization: -58.80 SS G_CDS: -0.46 Total: -59.26 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.07 Total: -10.38 kcal Atomic # 9 Polarization: -7.21 SS G_CDS: 0.11 Total: -7.10 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.03 Total: 16.76 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.05 -8.22 -41.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602991635.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.058 kcal (2) G-P(sol) polarization free energy of solvation -33.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds