Wall clock time and date at job start Tue Mar 31 2020 18:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86797 * 120.00001 * 2 1 4 4 H 1.48498 * 109.47165 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47119 * 299.99941 * 3 2 1 6 6 H 1.48503 * 109.47261 * 59.99879 * 3 2 1 7 7 C 1.38817 * 119.99909 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99749 * 164.85435 * 7 2 1 9 9 N 1.36936 * 119.99826 * 344.85497 * 7 2 1 10 10 C 1.46926 * 120.62949 * 151.49921 * 9 7 2 11 11 C 1.53198 * 108.89546 * 126.45578 * 10 9 7 12 12 C 1.53042 * 109.30630 * 54.56595 * 11 10 9 13 13 N 1.46503 * 109.45534 * 178.61300 * 12 11 10 14 14 C 1.34777 * 119.99864 * 204.99608 * 13 12 11 15 15 O 1.21591 * 120.00180 * 0.02562 * 14 13 12 16 16 N 1.34777 * 120.00301 * 179.97438 * 14 13 12 17 17 C 1.46498 * 120.00392 * 175.57773 * 16 14 13 18 18 C 1.53000 * 112.85199 * 293.61424 * 17 16 14 19 19 F 1.39897 * 109.47077 * 62.66186 * 18 17 16 20 20 F 1.39898 * 109.47054 * 182.66670 * 18 17 16 21 21 F 1.39904 * 109.46674 * 302.66441 * 18 17 16 22 22 C 1.53776 * 113.61313 * 162.41440 * 17 16 14 23 23 C 1.54056 * 86.98635 * 270.83943 * 22 17 16 24 24 C 1.53784 * 87.07714 * 334.56951 * 23 22 17 25 25 C 1.53034 * 109.53993 * 298.63422 * 12 11 10 26 26 C 1.46962 * 120.65888 * 331.31066 * 9 7 2 27 27 H 0.96994 * 120.00118 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.58494 * 6.60115 * 10 9 7 29 29 H 1.08997 * 109.58895 * 246.31769 * 10 9 7 30 30 H 1.08995 * 109.49641 * 174.51326 * 11 10 9 31 31 H 1.09002 * 109.49752 * 294.61709 * 11 10 9 32 32 H 1.08998 * 109.46316 * 58.64256 * 12 11 10 33 33 H 0.96999 * 120.00185 * 25.00122 * 13 12 11 34 34 H 0.97003 * 119.99552 * 355.58407 * 16 14 13 35 35 H 1.08993 * 113.61859 * 25.43256 * 22 17 16 36 36 H 1.09001 * 113.61455 * 156.33790 * 22 17 16 37 37 H 1.08998 * 113.61878 * 220.02091 * 23 22 17 38 38 H 1.09002 * 113.68742 * 89.12948 * 23 22 17 39 39 H 1.08999 * 113.61348 * 270.87966 * 24 23 22 40 40 H 1.09002 * 113.61422 * 139.97385 * 24 23 22 41 41 H 1.09005 * 109.50101 * 181.31997 * 25 12 11 42 42 H 1.09006 * 109.49622 * 301.38071 * 25 12 11 43 43 H 1.09003 * 109.46462 * 113.75014 * 26 9 7 44 44 H 1.09004 * 109.70786 * 353.47232 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0622 -1.2185 -0.2438 9 7 1.3612 -2.3673 0.3109 10 6 1.8154 -3.6486 -0.2466 11 6 2.0419 -4.6369 0.9018 12 6 0.7679 -4.7344 1.7442 13 7 0.9698 -5.7037 2.8240 14 6 -0.0887 -6.3344 3.3701 15 8 -1.2112 -6.0993 2.9662 16 7 0.0971 -7.2265 4.3632 17 6 -1.0584 -7.8398 5.0226 18 6 -1.8899 -6.8339 5.8212 19 9 -2.4177 -5.8719 4.9533 20 9 -2.9350 -7.5021 6.4680 21 9 -1.0771 -6.2080 6.7724 22 6 -0.7136 -9.1157 5.8086 23 6 -0.9779 -9.8927 4.5048 24 6 -1.8974 -8.7312 4.0918 25 6 0.4441 -3.3639 2.3431 26 6 0.1996 -2.3612 1.2111 27 1 -0.4850 0.8400 0.0004 28 1 2.7484 -3.5003 -0.7904 29 1 1.0568 -4.0422 -0.9231 30 1 2.2848 -5.6183 0.4946 31 1 2.8646 -4.2875 1.5256 32 1 -0.0600 -5.0599 1.1142 33 1 1.8653 -5.8914 3.1460 34 1 0.9959 -7.4623 4.6413 35 1 0.3238 -9.1572 6.1405 36 1 -1.4230 -9.3437 6.6041 37 1 -1.5054 -10.8343 4.6569 38 1 -0.0969 -9.9985 3.8718 39 1 -2.9299 -8.8542 4.4188 40 1 -1.8150 -8.4624 3.0386 41 1 -0.4501 -3.4392 2.9619 42 1 1.2817 -3.0267 2.9539 43 1 -0.6926 -2.6485 0.6548 44 1 0.0640 -1.3638 1.6294 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602991635.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:49 Heat of formation + Delta-G solvation = -158.112552 kcal Electronic energy + Delta-G solvation = -30822.190850 eV Core-core repulsion = 26167.024101 eV Total energy + Delta-G solvation = -4655.166749 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.156 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -51.07961 -48.64550 -48.51154 -41.65408 -39.95681 -38.69543 -35.95628 -34.61668 -33.59873 -31.71123 -31.08547 -28.93335 -26.96910 -26.86417 -24.48971 -23.90141 -23.61701 -22.05755 -21.14761 -20.71810 -19.55297 -19.39440 -19.27934 -18.90923 -18.65386 -17.26455 -16.77253 -16.35364 -16.16746 -15.74182 -15.49093 -15.46633 -15.34556 -15.30390 -15.20586 -15.01995 -14.76568 -14.71504 -14.68204 -14.29256 -14.13814 -13.92324 -13.42930 -13.24592 -13.16802 -13.01082 -12.67205 -12.58351 -12.12346 -12.07692 -12.02941 -11.91798 -11.85219 -11.66047 -11.52633 -11.37718 -11.11116 -10.60008 -10.41592 -9.88084 -8.70613 -7.86982 -5.34968 1.34631 1.46851 1.48216 1.59049 1.70670 2.13652 2.51255 2.74608 2.82922 2.98656 3.15369 3.29934 3.53720 3.63498 3.67313 3.74602 3.88635 4.09995 4.16683 4.35018 4.47977 4.61398 4.67197 4.68611 4.80295 4.85798 4.87596 4.96025 5.03978 5.06634 5.09060 5.10476 5.14002 5.32918 5.42616 5.46710 5.58741 5.63966 5.69871 5.91963 6.38996 7.04088 7.13397 7.55696 7.84249 8.37121 9.20015 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.022647 B = 0.002847 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.075729 B = 9833.477353 C =10459.375034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.056 4.056 3 Si 0.970 3.030 4 H -0.260 1.260 5 H -0.293 1.293 6 H -0.294 1.294 7 C -0.259 4.259 8 H 0.075 0.925 9 N -0.610 5.610 10 C 0.141 3.859 11 C -0.119 4.119 12 C 0.183 3.817 13 N -0.721 5.721 14 C 0.694 3.306 15 O -0.607 6.607 16 N -0.706 5.706 17 C 0.114 3.886 18 C 0.433 3.567 19 F -0.186 7.186 20 F -0.179 7.179 21 F -0.190 7.190 22 C -0.113 4.113 23 C -0.115 4.115 24 C -0.139 4.139 25 C -0.130 4.130 26 C 0.184 3.816 27 H 0.248 0.752 28 H 0.069 0.931 29 H 0.012 0.988 30 H 0.094 0.906 31 H 0.075 0.925 32 H 0.057 0.943 33 H 0.412 0.588 34 H 0.424 0.576 35 H 0.114 0.886 36 H 0.117 0.883 37 H 0.101 0.899 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.066 0.934 41 H 0.038 0.962 42 H 0.059 0.941 43 H -0.013 1.013 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.353 -24.713 13.942 28.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.251 4.251 3 Si 0.798 3.202 4 H -0.184 1.184 5 H -0.221 1.221 6 H -0.221 1.221 7 C -0.389 4.389 8 H 0.093 0.907 9 N -0.334 5.334 10 C 0.015 3.985 11 C -0.159 4.159 12 C 0.078 3.922 13 N -0.376 5.376 14 C 0.394 3.606 15 O -0.485 6.485 16 N -0.364 5.364 17 C 0.023 3.977 18 C 0.377 3.623 19 F -0.168 7.168 20 F -0.160 7.160 21 F -0.172 7.172 22 C -0.150 4.150 23 C -0.152 4.152 24 C -0.178 4.178 25 C -0.171 4.171 26 C 0.058 3.942 27 H 0.057 0.943 28 H 0.087 0.913 29 H 0.030 0.970 30 H 0.113 0.887 31 H 0.094 0.906 32 H 0.076 0.924 33 H 0.248 0.752 34 H 0.263 0.737 35 H 0.133 0.867 36 H 0.135 0.865 37 H 0.120 0.880 38 H 0.115 0.885 39 H 0.117 0.883 40 H 0.085 0.915 41 H 0.057 0.943 42 H 0.077 0.923 43 H 0.005 0.995 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.269 -24.330 13.556 27.943 hybrid contribution 0.181 1.810 0.217 1.832 sum 2.450 -22.519 13.772 26.511 Atomic orbital electron populations 1.70209 1.06946 1.25717 1.55742 1.25921 0.96041 1.01868 1.01300 0.85163 0.78826 0.79636 0.76559 1.18431 1.22051 1.22068 1.19621 0.92522 0.85507 1.41296 0.90704 1.44350 1.33991 1.03115 1.51907 1.21054 0.97941 0.85596 0.93882 1.22133 0.95869 1.00372 0.97511 1.20497 0.98583 0.86250 0.86866 1.45071 1.08700 1.44162 1.39671 1.16229 0.84974 0.79265 0.80135 1.91003 1.23808 1.68614 1.65058 1.44379 1.08918 1.45918 1.37199 1.22582 0.88988 0.89691 0.96429 1.21551 0.79694 0.82443 0.78601 1.93289 1.87595 1.66484 1.69420 1.93134 1.60063 1.80146 1.82672 1.93148 1.72828 1.84447 1.66751 1.23407 1.05810 0.87711 0.98076 1.22820 0.99682 0.97234 0.95438 1.23339 0.99621 0.95247 0.99592 1.22315 0.99920 0.96347 0.98507 1.20439 0.87654 0.97048 0.89098 0.94261 0.91270 0.97024 0.88714 0.90615 0.92439 0.75159 0.73689 0.86718 0.86461 0.88025 0.88523 0.88349 0.91478 0.94295 0.92258 0.99454 0.92859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.73 11.12 21.65 0.24 -57.49 16 2 C -0.06 -3.21 4.96 84.86 0.42 -2.79 16 3 Si 0.97 45.43 29.58 68.60 2.03 47.46 16 4 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 5 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 6 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 7 C -0.26 -14.26 9.59 84.03 0.81 -13.46 16 8 H 0.08 3.91 7.87 -2.91 -0.02 3.89 16 9 N -0.61 -30.97 3.00 -698.99 -2.10 -33.07 16 10 C 0.14 5.62 6.51 86.36 0.56 6.18 16 11 C -0.12 -3.55 5.55 30.67 0.17 -3.38 16 12 C 0.18 6.18 2.41 45.02 0.11 6.29 16 13 N -0.72 -18.13 5.08 -457.68 -2.33 -20.45 16 14 C 0.69 19.35 7.93 179.05 1.42 20.77 16 15 O -0.61 -23.08 12.42 -4.00 -0.05 -23.13 16 16 N -0.71 -12.79 5.11 -435.60 -2.23 -15.02 16 17 C 0.11 2.07 0.68 4.13 0.00 2.07 16 18 C 0.43 10.88 2.69 71.98 0.19 11.07 16 19 F -0.19 -6.53 14.40 44.97 0.65 -5.89 16 20 F -0.18 -4.01 15.70 44.97 0.71 -3.30 16 21 F -0.19 -4.82 17.27 44.97 0.78 -4.05 16 22 C -0.11 -0.94 7.28 31.21 0.23 -0.72 16 23 C -0.11 -0.98 8.00 31.22 0.25 -0.73 16 24 C -0.14 -2.45 6.83 31.12 0.21 -2.24 16 25 C -0.13 -5.42 5.65 30.67 0.17 -5.25 16 26 C 0.18 9.55 5.28 86.35 0.46 10.01 16 27 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 28 H 0.07 2.59 7.93 -2.38 -0.02 2.57 16 29 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.06 2.27 7.58 -2.39 -0.02 2.26 16 33 H 0.41 6.99 8.62 -92.71 -0.80 6.19 16 34 H 0.42 4.19 8.68 -92.71 -0.80 3.39 16 35 H 0.11 0.41 8.09 -2.39 -0.02 0.39 16 36 H 0.12 0.84 7.40 -2.39 -0.02 0.82 16 37 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 38 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.10 1.69 7.58 -2.39 -0.02 1.68 16 40 H 0.07 1.58 7.17 -2.39 -0.02 1.57 16 41 H 0.04 1.72 8.14 -2.38 -0.02 1.70 16 42 H 0.06 2.38 8.14 -2.38 -0.02 2.36 16 43 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 44 H 0.05 3.13 6.05 -2.39 -0.01 3.12 16 Total: -1.00 -76.96 358.81 2.15 -74.81 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -0.56 Total: 12.29 kcal Atomic # 6 Polarization: 22.83 SS G_CDS: 5.00 Total: 27.84 kcal Atomic # 7 Polarization: -119.63 SS G_CDS: -6.41 Total: -126.03 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: -0.05 Total: -23.13 kcal Atomic # 9 Polarization: -15.37 SS G_CDS: 2.13 Total: -13.23 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -76.96 2.15 -74.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602991635.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.304 kcal (2) G-P(sol) polarization free energy of solvation -76.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds