Wall clock time and date at job start Tue Mar 31 2020 18:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 120.00136 * 2 1 4 4 H 1.48499 * 109.46944 * 270.00144 * 3 2 1 5 5 H 1.48499 * 109.46898 * 30.00086 * 3 2 1 6 6 H 1.48501 * 109.47258 * 150.00168 * 3 2 1 7 7 C 1.37882 * 119.99952 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00265 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99908 * 180.02562 * 7 2 1 10 10 N 1.46899 * 109.47084 * 180.02562 * 9 7 2 11 11 C 1.46901 * 110.99972 * 169.99926 * 10 9 7 12 12 C 1.53249 * 109.33666 * 187.25030 * 11 10 9 13 13 N 1.47080 * 108.52169 * 306.16631 * 12 11 10 14 14 C 1.34774 * 120.88110 * 231.19047 * 13 12 11 15 15 O 1.21586 * 120.00034 * 354.99606 * 14 13 12 16 16 N 1.34779 * 120.00072 * 174.99857 * 14 13 12 17 17 C 1.46500 * 119.99762 * 185.35496 * 16 14 13 18 18 C 1.53001 * 112.85095 * 66.03862 * 17 16 14 19 19 F 1.39899 * 109.46978 * 54.38250 * 18 17 16 20 20 F 1.39892 * 109.46908 * 294.37642 * 18 17 16 21 21 F 1.39900 * 109.46960 * 174.37835 * 18 17 16 22 22 C 1.53781 * 113.60873 * 197.23371 * 17 16 14 23 23 C 1.53957 * 87.02118 * 89.23058 * 22 17 16 24 24 C 1.53776 * 113.61327 * 294.83712 * 17 16 14 25 25 C 1.47077 * 118.23667 * 51.45812 * 13 12 11 26 26 C 1.46904 * 110.99561 * 294.29566 * 10 9 7 27 27 H 0.96994 * 120.00359 * 359.97438 * 1 2 3 28 28 H 1.08993 * 109.47750 * 59.99609 * 9 7 2 29 29 H 1.09000 * 109.46838 * 299.99102 * 9 7 2 30 30 H 1.09002 * 109.49779 * 67.29256 * 11 10 9 31 31 H 1.08996 * 109.51347 * 307.22077 * 11 10 9 32 32 H 1.09001 * 109.62292 * 186.45899 * 12 11 10 33 33 H 1.08998 * 109.62724 * 65.87692 * 12 11 10 34 34 H 0.96994 * 119.99525 * 5.34613 * 16 14 13 35 35 H 1.09008 * 113.61433 * 203.74975 * 22 17 16 36 36 H 1.09000 * 113.61661 * 334.65077 * 22 17 16 37 37 H 1.09003 * 113.53575 * 270.80985 * 23 22 17 38 38 H 1.08996 * 113.67029 * 139.93262 * 23 22 17 39 39 H 1.09002 * 113.61493 * 25.35808 * 24 17 16 40 40 H 1.08999 * 113.61158 * 156.17157 * 24 17 16 41 41 H 1.08999 * 109.62828 * 68.25254 * 25 13 12 42 42 H 1.08995 * 109.62740 * 188.83101 * 25 13 12 43 43 H 1.08999 * 109.49343 * 292.70496 * 26 10 9 44 44 H 1.09000 * 109.49409 * 52.79371 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 7 4.0012 -2.5791 -0.0013 11 6 5.4501 -2.6249 -0.2390 12 6 5.8898 -4.0826 -0.4131 13 7 5.4259 -4.8528 0.7508 14 6 6.2757 -5.6333 1.4472 15 8 7.4201 -5.7795 1.0633 16 7 5.8571 -6.2519 2.5690 17 6 6.8094 -7.0044 3.3895 18 6 7.8695 -6.1121 4.0382 19 9 7.2416 -5.0924 4.7616 20 9 8.6772 -5.5495 3.0442 21 9 8.6589 -6.8786 4.9022 22 6 6.1398 -7.9796 4.3721 23 6 6.2013 -9.0290 3.2472 24 6 7.3925 -8.2383 2.6809 25 6 4.0086 -4.7534 1.1309 26 6 3.6441 -3.2648 1.2478 27 1 -0.4850 0.8400 0.0004 28 1 3.8746 -0.6808 0.8904 29 1 3.8751 -0.6798 -0.8895 30 1 5.9723 -2.1867 0.6115 31 1 5.6890 -2.0626 -1.1416 32 1 6.9770 -4.1321 -0.4752 33 1 5.4493 -4.4918 -1.3223 34 1 4.9253 -6.1988 2.8332 35 1 6.7603 -8.2262 5.2337 36 1 5.1250 -7.6931 4.6482 37 1 5.3254 -9.0234 2.5984 38 1 6.4656 -10.0278 3.5945 39 1 7.3876 -8.1604 1.5937 40 1 8.3568 -8.5549 3.0782 41 1 3.3907 -5.2259 0.3673 42 1 3.8513 -5.2467 2.0901 43 1 4.1915 -2.8176 2.0776 44 1 2.5728 -3.1667 1.4232 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602993343.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:47 Heat of formation + Delta-G solvation = -130.806550 kcal Electronic energy + Delta-G solvation = -30999.357420 eV Core-core repulsion = 26345.374748 eV Total energy + Delta-G solvation = -4653.982672 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.156 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.12364 -47.71548 -47.47142 -40.88242 -39.13724 -37.46284 -34.58410 -33.51651 -32.34199 -30.75654 -28.87517 -28.02422 -26.37010 -25.70021 -23.62622 -23.31515 -22.06801 -20.93823 -19.99388 -19.54514 -18.53310 -18.35633 -18.10488 -17.97914 -16.87115 -16.17279 -15.62560 -15.27131 -14.95397 -14.65443 -14.59102 -14.50908 -14.39691 -14.14831 -14.05505 -13.88573 -13.71836 -13.67349 -13.64064 -13.24642 -13.08595 -12.85718 -12.53393 -12.45001 -12.21352 -11.59390 -11.43589 -11.34604 -11.21615 -11.16315 -11.02840 -10.84010 -10.62546 -10.38263 -10.01287 -9.93640 -9.48525 -9.38023 -8.63750 -8.51422 -7.50672 -6.12466 -4.10536 2.23447 2.59135 3.09500 3.24266 3.32139 3.34160 3.44133 3.60526 3.69416 3.81066 4.23050 4.33734 4.36151 4.52429 4.56084 4.66938 5.11038 5.14656 5.16057 5.19450 5.27701 5.31795 5.37877 5.45403 5.53039 5.61733 5.67030 5.68715 5.73803 5.95393 6.12946 6.14387 6.31851 6.33718 6.45984 6.76484 6.81338 6.88856 7.49077 7.71740 7.81884 7.90831 8.46563 8.55923 8.94093 9.49183 11.00289 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.020727 B = 0.002923 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.558221 B = 9577.581093 C = 9677.060190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.070 3.930 3 Si 0.874 3.126 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.512 4.512 8 H 0.081 0.919 9 C 0.162 3.838 10 N -0.525 5.525 11 C 0.037 3.963 12 C 0.138 3.862 13 N -0.621 5.621 14 C 0.705 3.295 15 O -0.573 6.573 16 N -0.723 5.723 17 C 0.123 3.877 18 C 0.445 3.555 19 F -0.184 7.184 20 F -0.159 7.159 21 F -0.184 7.184 22 C -0.131 4.131 23 C -0.131 4.131 24 C -0.128 4.128 25 C 0.115 3.885 26 C 0.050 3.950 27 H 0.264 0.736 28 H -0.011 1.011 29 H 0.026 0.974 30 H 0.027 0.973 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.073 0.927 34 H 0.407 0.593 35 H 0.109 0.891 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.095 0.905 40 H 0.098 0.902 41 H 0.081 0.919 42 H 0.070 0.930 43 H 0.026 0.974 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.118 -18.154 8.630 24.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.132 4.132 3 Si 0.702 3.298 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.193 1.193 7 C -0.550 4.550 8 H 0.099 0.901 9 C 0.036 3.964 10 N -0.250 5.250 11 C -0.093 4.093 12 C 0.015 3.985 13 N -0.358 5.358 14 C 0.407 3.593 15 O -0.449 6.449 16 N -0.382 5.382 17 C 0.032 3.968 18 C 0.389 3.611 19 F -0.166 7.166 20 F -0.140 7.140 21 F -0.165 7.165 22 C -0.169 4.169 23 C -0.169 4.169 24 C -0.167 4.167 25 C -0.009 4.009 26 C -0.080 4.080 27 H 0.074 0.926 28 H 0.007 0.993 29 H 0.044 0.956 30 H 0.046 0.954 31 H 0.101 0.899 32 H 0.109 0.891 33 H 0.092 0.908 34 H 0.246 0.754 35 H 0.127 0.873 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.101 0.899 39 H 0.113 0.887 40 H 0.117 0.883 41 H 0.099 0.901 42 H 0.088 0.912 43 H 0.044 0.956 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 13.580 -18.311 7.946 24.142 hybrid contribution 0.398 1.875 0.971 2.149 sum 13.979 -16.435 8.917 23.346 Atomic orbital electron populations 1.69880 1.06113 1.26955 1.50779 1.24887 0.94731 0.98875 0.94714 0.86875 0.80287 0.84018 0.78663 1.20075 1.21170 1.19327 1.20992 0.88566 0.94719 1.50741 0.90068 1.20183 0.97162 0.83782 0.95264 1.61897 1.10181 1.19201 1.33678 1.22500 0.90282 0.95533 1.00975 1.21645 1.00195 0.90078 0.86586 1.47397 1.09371 1.47154 1.31874 1.15827 0.84747 0.78896 0.79857 1.90960 1.17478 1.66602 1.69910 1.44779 1.11720 1.56621 1.25129 1.22221 0.90344 0.89479 0.94753 1.20924 0.83109 0.80081 0.77005 1.93179 1.82182 1.62140 1.79080 1.93312 1.74718 1.85826 1.60186 1.93136 1.76310 1.75535 1.71547 1.23342 1.02252 0.94005 0.97251 1.22832 0.98878 0.98194 0.96976 1.23256 0.98948 0.91576 1.02898 1.21992 0.80841 0.98330 0.99695 1.22442 1.02989 0.91511 0.91012 0.92583 0.99335 0.95561 0.95437 0.89892 0.89142 0.90837 0.75411 0.87291 0.89260 0.89279 0.89942 0.88684 0.88348 0.90123 0.91231 0.95566 0.87892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.66 13.96 55.43 0.77 -25.89 16 2 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 3 Si 0.87 21.02 27.47 -169.99 -4.67 16.35 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.27 -6.28 6.54 56.52 0.37 -5.91 16 7 C -0.51 -13.85 8.96 -34.44 -0.31 -14.16 16 8 H 0.08 2.36 7.37 -52.49 -0.39 1.97 16 9 C 0.16 3.77 3.79 -4.98 -0.02 3.75 16 10 N -0.52 -10.26 4.62 -235.46 -1.09 -11.34 16 11 C 0.04 0.61 5.62 -3.70 -0.02 0.59 16 12 C 0.14 2.03 6.58 -3.60 -0.02 2.00 16 13 N -0.62 -8.83 3.00 -177.90 -0.53 -9.37 16 14 C 0.71 10.08 7.76 -86.92 -0.67 9.40 16 15 O -0.57 -9.72 12.28 5.29 0.06 -9.65 16 16 N -0.72 -7.89 4.98 -51.66 -0.26 -8.15 16 17 C 0.12 1.23 0.68 -131.01 -0.09 1.14 16 18 C 0.44 5.52 2.68 37.16 0.10 5.62 16 19 F -0.18 -2.47 17.23 2.25 0.04 -2.43 16 20 F -0.16 -2.48 14.50 2.25 0.03 -2.45 16 21 F -0.18 -2.02 15.72 2.25 0.04 -1.99 16 22 C -0.13 -0.84 7.27 -25.83 -0.19 -1.03 16 23 C -0.13 -0.80 8.00 -25.83 -0.21 -1.00 16 24 C -0.13 -1.14 6.81 -25.92 -0.18 -1.32 16 25 C 0.11 1.51 6.63 -3.36 -0.02 1.49 16 26 C 0.05 0.86 5.47 -3.46 -0.02 0.84 16 27 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 28 H -0.01 -0.27 7.18 -51.93 -0.37 -0.64 16 29 H 0.03 0.61 7.40 -51.93 -0.38 0.23 16 30 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.08 1.30 7.99 -51.93 -0.41 0.89 16 32 H 0.09 1.34 7.10 -51.93 -0.37 0.97 16 33 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.41 3.56 6.16 -40.82 -0.25 3.31 16 35 H 0.11 0.61 7.30 -51.92 -0.38 0.24 16 36 H 0.09 0.46 8.09 -51.93 -0.42 0.04 16 37 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.09 1.04 7.18 -51.93 -0.37 0.67 16 40 H 0.10 0.80 7.69 -51.93 -0.40 0.40 16 41 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.07 0.69 5.63 -51.93 -0.29 0.40 16 43 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 44 H 0.10 1.95 6.67 -51.93 -0.35 1.60 16 LS Contribution 353.13 15.07 5.32 5.32 Total: -1.00 -32.24 353.13 -8.12 -40.35 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -6.09 Total: 0.06 kcal Atomic # 6 Polarization: 10.93 SS G_CDS: -1.75 Total: 9.18 kcal Atomic # 7 Polarization: -53.65 SS G_CDS: -1.11 Total: -54.75 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: 0.06 Total: -9.65 kcal Atomic # 9 Polarization: -6.97 SS G_CDS: 0.11 Total: -6.86 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.67 Total: 16.35 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.24 -8.12 -40.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602993343.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.453 kcal (2) G-P(sol) polarization free energy of solvation -32.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds