Wall clock time and date at job start Tue Mar 31 2020 18:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 120.00136 * 2 1 4 4 H 1.48499 * 109.46944 * 270.00144 * 3 2 1 5 5 H 1.48499 * 109.46898 * 30.00086 * 3 2 1 6 6 H 1.48501 * 109.47258 * 150.00168 * 3 2 1 7 7 C 1.37882 * 119.99952 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00265 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99908 * 180.02562 * 7 2 1 10 10 N 1.46899 * 109.47084 * 180.02562 * 9 7 2 11 11 C 1.46901 * 110.99972 * 169.99926 * 10 9 7 12 12 C 1.53249 * 109.33666 * 187.25030 * 11 10 9 13 13 N 1.47080 * 108.52169 * 306.16631 * 12 11 10 14 14 C 1.34774 * 120.88110 * 231.19047 * 13 12 11 15 15 O 1.21586 * 120.00034 * 354.99606 * 14 13 12 16 16 N 1.34779 * 120.00072 * 174.99857 * 14 13 12 17 17 C 1.46500 * 119.99762 * 185.35496 * 16 14 13 18 18 C 1.53001 * 112.85095 * 66.03862 * 17 16 14 19 19 F 1.39899 * 109.46978 * 54.38250 * 18 17 16 20 20 F 1.39892 * 109.46908 * 294.37642 * 18 17 16 21 21 F 1.39900 * 109.46960 * 174.37835 * 18 17 16 22 22 C 1.53781 * 113.60873 * 197.23371 * 17 16 14 23 23 C 1.53957 * 87.02118 * 89.23058 * 22 17 16 24 24 C 1.53776 * 113.61327 * 294.83712 * 17 16 14 25 25 C 1.47077 * 118.23667 * 51.45812 * 13 12 11 26 26 C 1.46904 * 110.99561 * 294.29566 * 10 9 7 27 27 H 0.96994 * 120.00359 * 359.97438 * 1 2 3 28 28 H 1.08993 * 109.47750 * 59.99609 * 9 7 2 29 29 H 1.09000 * 109.46838 * 299.99102 * 9 7 2 30 30 H 1.09002 * 109.49779 * 67.29256 * 11 10 9 31 31 H 1.08996 * 109.51347 * 307.22077 * 11 10 9 32 32 H 1.09001 * 109.62292 * 186.45899 * 12 11 10 33 33 H 1.08998 * 109.62724 * 65.87692 * 12 11 10 34 34 H 0.96994 * 119.99525 * 5.34613 * 16 14 13 35 35 H 1.09008 * 113.61433 * 203.74975 * 22 17 16 36 36 H 1.09000 * 113.61661 * 334.65077 * 22 17 16 37 37 H 1.09003 * 113.53575 * 270.80985 * 23 22 17 38 38 H 1.08996 * 113.67029 * 139.93262 * 23 22 17 39 39 H 1.09002 * 113.61493 * 25.35808 * 24 17 16 40 40 H 1.08999 * 113.61158 * 156.17157 * 24 17 16 41 41 H 1.08999 * 109.62828 * 68.25254 * 25 13 12 42 42 H 1.08995 * 109.62740 * 188.83101 * 25 13 12 43 43 H 1.08999 * 109.49343 * 292.70496 * 26 10 9 44 44 H 1.09000 * 109.49409 * 52.79371 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 7 4.0012 -2.5791 -0.0013 11 6 5.4501 -2.6249 -0.2390 12 6 5.8898 -4.0826 -0.4131 13 7 5.4259 -4.8528 0.7508 14 6 6.2757 -5.6333 1.4472 15 8 7.4201 -5.7795 1.0633 16 7 5.8571 -6.2519 2.5690 17 6 6.8094 -7.0044 3.3895 18 6 7.8695 -6.1121 4.0382 19 9 7.2416 -5.0924 4.7616 20 9 8.6772 -5.5495 3.0442 21 9 8.6589 -6.8786 4.9022 22 6 6.1398 -7.9796 4.3721 23 6 6.2013 -9.0290 3.2472 24 6 7.3925 -8.2383 2.6809 25 6 4.0086 -4.7534 1.1309 26 6 3.6441 -3.2648 1.2478 27 1 -0.4850 0.8400 0.0004 28 1 3.8746 -0.6808 0.8904 29 1 3.8751 -0.6798 -0.8895 30 1 5.9723 -2.1867 0.6115 31 1 5.6890 -2.0626 -1.1416 32 1 6.9770 -4.1321 -0.4752 33 1 5.4493 -4.4918 -1.3223 34 1 4.9253 -6.1988 2.8332 35 1 6.7603 -8.2262 5.2337 36 1 5.1250 -7.6931 4.6482 37 1 5.3254 -9.0234 2.5984 38 1 6.4656 -10.0278 3.5945 39 1 7.3876 -8.1604 1.5937 40 1 8.3568 -8.5549 3.0782 41 1 3.3907 -5.2259 0.3673 42 1 3.8513 -5.2467 2.0901 43 1 4.1915 -2.8176 2.0776 44 1 2.5728 -3.1667 1.4232 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602993343.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:46 Heat of formation + Delta-G solvation = -153.087069 kcal Electronic energy + Delta-G solvation = -31000.323576 eV Core-core repulsion = 26345.374748 eV Total energy + Delta-G solvation = -4654.948828 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.156 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -51.10058 -48.66415 -48.53057 -41.86038 -40.10846 -38.71718 -36.00414 -34.74198 -34.11017 -32.00069 -30.48290 -29.00247 -27.25478 -26.94154 -24.81054 -24.33746 -23.48180 -22.36828 -20.89434 -20.64612 -19.47092 -19.35753 -19.14069 -18.97976 -18.90620 -17.09941 -16.69505 -16.51715 -16.30503 -16.04669 -15.85512 -15.50785 -15.41198 -15.33866 -15.24277 -15.08621 -15.03043 -14.75743 -14.72321 -14.49180 -14.31534 -14.04918 -13.67915 -13.42062 -13.22678 -13.15444 -12.91779 -12.53651 -12.38062 -12.24597 -12.06851 -12.00682 -11.87950 -11.84860 -11.66885 -11.41840 -11.12826 -10.77577 -10.43974 -9.71617 -9.07758 -8.28030 -6.30617 1.27112 1.34676 1.36274 1.45522 1.65588 2.03708 2.33845 2.57958 2.72138 2.80835 3.04351 3.07989 3.13691 3.47763 3.61499 3.73049 3.89259 4.01120 4.11459 4.13695 4.22321 4.39456 4.48791 4.60700 4.67822 4.72443 4.79333 4.83940 4.85709 4.92389 4.94944 5.00799 5.05008 5.07733 5.12080 5.35443 5.41262 5.52145 5.74478 5.96588 6.28568 6.58215 6.75088 6.76059 7.33020 7.38655 8.87740 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.020727 B = 0.002923 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.558221 B = 9577.581093 C = 9677.060190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.013 3.987 3 Si 0.940 3.060 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.258 1.258 7 C -0.512 4.512 8 H 0.048 0.952 9 C 0.171 3.829 10 N -0.535 5.535 11 C 0.040 3.960 12 C 0.145 3.855 13 N -0.625 5.625 14 C 0.703 3.297 15 O -0.601 6.601 16 N -0.711 5.711 17 C 0.111 3.889 18 C 0.436 3.564 19 F -0.193 7.193 20 F -0.183 7.183 21 F -0.176 7.176 22 C -0.118 4.118 23 C -0.117 4.117 24 C -0.132 4.132 25 C 0.126 3.874 26 C 0.050 3.950 27 H 0.267 0.733 28 H -0.018 1.018 29 H 0.030 0.970 30 H 0.019 0.981 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.418 0.582 35 H 0.120 0.880 36 H 0.108 0.892 37 H 0.093 0.907 38 H 0.103 0.897 39 H 0.071 0.929 40 H 0.102 0.898 41 H 0.086 0.914 42 H 0.106 0.894 43 H 0.019 0.981 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.906 -19.369 9.489 25.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.185 4.185 3 Si 0.764 3.236 4 H -0.191 1.191 5 H -0.209 1.209 6 H -0.182 1.182 7 C -0.550 4.550 8 H 0.067 0.933 9 C 0.044 3.956 10 N -0.260 5.260 11 C -0.089 4.089 12 C 0.022 3.978 13 N -0.361 5.361 14 C 0.405 3.595 15 O -0.480 6.480 16 N -0.371 5.371 17 C 0.020 3.980 18 C 0.380 3.620 19 F -0.174 7.174 20 F -0.164 7.164 21 F -0.158 7.158 22 C -0.156 4.156 23 C -0.154 4.154 24 C -0.171 4.171 25 C 0.003 3.997 26 C -0.079 4.079 27 H 0.076 0.924 28 H 0.000 1.000 29 H 0.048 0.952 30 H 0.037 0.963 31 H 0.111 0.889 32 H 0.109 0.891 33 H 0.100 0.900 34 H 0.259 0.741 35 H 0.138 0.862 36 H 0.126 0.874 37 H 0.111 0.889 38 H 0.122 0.878 39 H 0.089 0.911 40 H 0.121 0.879 41 H 0.105 0.895 42 H 0.124 0.876 43 H 0.038 0.962 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 14.366 -19.559 8.828 25.824 hybrid contribution 0.182 2.185 0.733 2.312 sum 14.549 -17.374 9.561 24.596 Atomic orbital electron populations 1.70018 1.07873 1.28017 1.52509 1.25728 0.95499 1.02714 0.94542 0.85824 0.79209 0.79372 0.79168 1.19053 1.20884 1.18184 1.21205 0.90610 0.93493 1.49713 0.93341 1.19946 0.94646 0.86148 0.94888 1.61825 1.12126 1.17022 1.34984 1.22541 0.88140 0.97178 1.01012 1.21528 1.00213 0.88833 0.87269 1.47414 1.09695 1.47205 1.31830 1.15963 0.84247 0.78926 0.80405 1.90946 1.18695 1.67549 1.70766 1.44659 1.12487 1.55902 1.24009 1.22633 0.90259 0.89094 0.95989 1.21432 0.83551 0.80187 0.76800 1.93157 1.82239 1.62777 1.79264 1.93261 1.75567 1.86356 1.61252 1.93142 1.76267 1.75126 1.71251 1.23429 1.03082 0.92106 0.96942 1.22805 0.97415 0.98846 0.96306 1.23304 1.00580 0.91826 1.01374 1.21942 0.80318 0.95476 1.01923 1.22428 1.01496 0.94085 0.89870 0.92446 1.00028 0.95233 0.96297 0.88937 0.89112 0.89981 0.74080 0.86161 0.87359 0.88878 0.87824 0.91070 0.87916 0.89539 0.87647 0.96243 0.90141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.08 13.96 21.45 0.30 -56.78 16 2 C 0.01 0.73 5.47 84.66 0.46 1.20 16 3 Si 0.94 43.25 27.47 68.60 1.88 45.13 16 4 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 5 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 6 H -0.26 -11.31 6.54 99.48 0.65 -10.66 16 7 C -0.51 -28.18 8.96 25.60 0.23 -27.95 16 8 H 0.05 2.92 7.37 -2.91 -0.02 2.90 16 9 C 0.17 7.90 3.79 85.56 0.32 8.22 16 10 N -0.54 -20.70 4.62 -898.86 -4.15 -24.85 16 11 C 0.04 1.30 5.62 86.39 0.49 1.79 16 12 C 0.14 4.09 6.58 86.35 0.57 4.66 16 13 N -0.62 -16.86 3.00 -835.03 -2.51 -19.37 16 14 C 0.70 19.17 7.76 179.05 1.39 20.56 16 15 O -0.60 -20.08 12.28 -3.99 -0.05 -20.13 16 16 N -0.71 -14.07 4.98 -435.61 -2.17 -16.24 16 17 C 0.11 2.00 0.68 4.13 0.00 2.00 16 18 C 0.44 10.35 2.68 71.98 0.19 10.54 16 19 F -0.19 -4.96 17.23 44.97 0.78 -4.18 16 20 F -0.18 -5.69 14.50 44.97 0.65 -5.04 16 21 F -0.18 -3.64 15.72 44.97 0.71 -2.93 16 22 C -0.12 -1.11 7.27 31.18 0.23 -0.88 16 23 C -0.12 -1.02 8.00 31.18 0.25 -0.77 16 24 C -0.13 -2.12 6.81 31.12 0.21 -1.91 16 25 C 0.13 3.11 6.63 86.51 0.57 3.68 16 26 C 0.05 1.72 5.47 86.54 0.47 2.19 16 27 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 28 H -0.02 -0.85 7.18 -2.39 -0.02 -0.87 16 29 H 0.03 1.35 7.40 -2.39 -0.02 1.33 16 30 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.09 2.79 7.99 -2.39 -0.02 2.77 16 32 H 0.09 2.60 7.10 -2.39 -0.02 2.59 16 33 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.42 6.08 6.16 -92.71 -0.57 5.51 16 35 H 0.12 0.92 7.30 -2.38 -0.02 0.90 16 36 H 0.11 0.65 8.09 -2.39 -0.02 0.64 16 37 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 39 H 0.07 1.51 7.18 -2.39 -0.02 1.49 16 40 H 0.10 1.52 7.69 -2.39 -0.02 1.50 16 41 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 42 H 0.11 1.81 5.63 -2.39 -0.01 1.80 16 43 H 0.02 0.68 8.14 -2.39 -0.02 0.67 16 44 H 0.08 3.11 6.67 -2.39 -0.02 3.09 16 Total: -1.00 -71.33 353.13 1.24 -70.09 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: 0.41 Total: 10.97 kcal Atomic # 6 Polarization: 17.94 SS G_CDS: 5.39 Total: 23.33 kcal Atomic # 7 Polarization: -108.71 SS G_CDS: -8.53 Total: -117.24 kcal Atomic # 8 Polarization: -20.08 SS G_CDS: -0.05 Total: -20.13 kcal Atomic # 9 Polarization: -14.29 SS G_CDS: 2.13 Total: -12.15 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 1.88 Total: 45.13 kcal Total: -71.33 1.24 -70.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602993343.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.998 kcal (2) G-P(sol) polarization free energy of solvation -71.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds