Wall clock time and date at job start Tue Mar 31 2020 18:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.76201 * 103.00073 * 2 1 4 4 C 1.39042 * 120.04403 * 359.97438 * 3 2 1 5 5 C 1.38099 * 120.05777 * 179.97438 * 4 3 2 6 6 C 1.38205 * 120.14979 * 359.97438 * 5 4 3 7 7 C 1.38917 * 120.09072 * 0.02562 * 6 5 4 8 8 N 1.39944 * 120.02830 * 179.97438 * 7 6 5 9 9 C 1.34779 * 119.99381 * 144.32487 * 8 7 6 10 10 O 1.21586 * 120.00122 * 4.51366 * 9 8 7 11 11 N 1.34781 * 119.99648 * 184.51570 * 9 8 7 12 12 C 1.47082 * 120.87730 * 174.47141 * 11 9 8 13 13 C 1.53238 * 108.52058 * 129.08603 * 12 11 9 14 14 N 1.46899 * 109.34165 * 53.82865 * 13 12 11 15 15 C 1.46903 * 111.00187 * 172.74894 * 14 13 12 16 16 C 1.50705 * 109.46564 * 294.29730 * 15 14 13 17 17 H 1.07995 * 120.00398 * 0.02562 * 16 15 14 18 18 C 1.37871 * 119.99561 * 179.97438 * 16 15 14 19 19 N 1.31518 * 120.00542 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00088 * 180.02562 * 18 16 15 21 21 H 1.48508 * 109.46869 * 0.02562 * 20 18 16 22 22 H 1.48493 * 109.47460 * 120.00097 * 20 18 16 23 23 H 1.48506 * 109.47517 * 240.00465 * 20 18 16 24 24 C 1.46906 * 111.26810 * 296.89310 * 14 13 12 25 25 C 1.47078 * 120.88029 * 354.74519 * 11 9 8 26 26 C 1.38730 * 119.93674 * 0.27531 * 7 6 5 27 27 H 1.08997 * 109.47048 * 59.99991 * 1 2 3 28 28 H 1.09002 * 109.46764 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47003 * 299.99874 * 1 2 3 30 30 H 1.07997 * 119.97038 * 0.02562 * 4 3 2 31 31 H 1.08000 * 119.92738 * 179.97438 * 5 4 3 32 32 H 1.08004 * 119.95278 * 179.97438 * 6 5 4 33 33 H 0.96999 * 120.00720 * 324.32788 * 8 7 6 34 34 H 1.09001 * 109.62622 * 248.79099 * 12 11 9 35 35 H 1.08995 * 109.63265 * 9.37604 * 12 11 9 36 36 H 1.09003 * 109.49607 * 293.86514 * 13 12 11 37 37 H 1.09004 * 109.49138 * 173.78421 * 13 12 11 38 38 H 1.08994 * 109.47020 * 54.29745 * 15 14 13 39 39 H 1.08997 * 109.46915 * 174.29774 * 15 14 13 40 40 H 0.97002 * 120.00570 * 180.02562 * 19 18 16 41 41 H 1.09000 * 109.48924 * 303.14801 * 24 14 13 42 42 H 1.08997 * 109.49664 * 183.06555 * 24 14 13 43 43 H 1.08993 * 109.63037 * 350.62051 * 25 11 9 44 44 H 1.08995 * 109.62780 * 111.20719 * 25 11 9 45 45 H 1.08003 * 120.06812 * 179.69992 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1942 2.6659 -0.0005 5 6 1.5046 4.0116 0.0000 6 6 2.8251 4.4194 0.0016 7 6 3.8452 3.4765 0.0021 8 7 5.1819 3.8909 0.0032 9 6 6.1058 3.1846 0.6845 10 8 5.7945 2.1434 1.2298 11 7 7.3746 3.6325 0.7613 12 6 8.3691 2.9433 1.5976 13 6 9.6161 2.6738 0.7488 14 7 10.0760 3.9323 0.1465 15 6 11.3650 3.7501 -0.5342 16 6 12.4278 3.4211 0.4824 17 1 12.1713 3.3537 1.5293 18 6 13.7273 3.2052 0.0757 19 7 14.0396 3.2867 -1.1992 20 14 15.0446 2.7967 1.3356 21 1 14.4397 2.7644 2.6915 22 1 15.6324 1.4690 1.0246 23 1 16.1088 3.8316 1.2924 24 6 9.0695 4.4831 -0.7708 25 6 7.8000 4.8268 0.0157 26 6 3.5377 2.1237 -0.0047 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 0.1614 2.3504 -0.0005 31 1 0.7136 4.7469 -0.0008 32 1 3.0642 5.4726 0.0016 33 1 5.4436 4.6864 -0.4862 34 1 8.6334 3.5736 2.4467 35 1 7.9572 1.9989 1.9532 36 1 9.3727 1.9611 -0.0392 37 1 10.4042 2.2635 1.3802 38 1 11.2843 2.9343 -1.2525 39 1 11.6332 4.6686 -1.0561 40 1 14.9539 3.1344 -1.4854 41 1 8.8337 3.7452 -1.5376 42 1 9.4610 5.3849 -1.2415 43 1 7.0119 5.1276 -0.6744 44 1 8.0096 5.6381 0.7127 45 1 4.3291 1.3889 -0.0092 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603839488.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:28 Heat of formation + Delta-G solvation = 22.460284 kcal Electronic energy + Delta-G solvation = -26008.008513 eV Core-core repulsion = 22345.281601 eV Total energy + Delta-G solvation = -3662.726912 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.87989 -39.10112 -37.60370 -34.98337 -34.47709 -32.44213 -31.25326 -30.94822 -30.23672 -28.96803 -27.94786 -25.56218 -23.65075 -23.27321 -22.74124 -21.99732 -20.75512 -19.44241 -18.72280 -17.67171 -16.62935 -16.43158 -16.24606 -15.80570 -15.31242 -14.87609 -14.73242 -14.54479 -14.43753 -14.19949 -14.02740 -13.97791 -13.69439 -13.55763 -13.29819 -12.90835 -12.83868 -12.35157 -12.09848 -11.95651 -11.80950 -11.33178 -11.22090 -10.88785 -10.80258 -10.74479 -10.63214 -10.55279 -10.44041 -9.99265 -9.89788 -9.79109 -9.29511 -8.68352 -8.49469 -8.26048 -7.62030 -7.37686 -6.08389 -4.10278 0.94944 1.16570 1.26552 2.16978 2.49534 3.03507 3.28406 3.36198 3.40603 3.55494 3.70921 4.37041 4.62856 4.68846 4.69927 4.70581 4.81957 4.93095 5.09415 5.20826 5.23299 5.27841 5.29272 5.32738 5.36546 5.52713 5.61328 5.75251 5.86155 5.96004 6.00322 6.11385 6.12454 6.14814 6.21086 6.35261 6.50528 6.61459 6.80387 6.88420 7.17816 7.24887 7.71078 7.77549 7.97021 8.08117 8.43968 8.45609 8.97238 9.54566 11.02434 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.024397 B = 0.002133 C = 0.002035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.386379 B =13123.906512 C =13753.135589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 S -0.110 6.110 3 C -0.067 4.067 4 C -0.156 4.156 5 C -0.081 4.081 6 C -0.154 4.154 7 C 0.189 3.811 8 N -0.690 5.690 9 C 0.706 3.294 10 O -0.575 6.575 11 N -0.619 5.619 12 C 0.132 3.868 13 C 0.050 3.950 14 N -0.535 5.535 15 C 0.193 3.807 16 C -0.509 4.509 17 H 0.065 0.935 18 C 0.055 3.945 19 N -0.898 5.898 20 Si 0.898 3.102 21 H -0.271 1.271 22 H -0.285 1.285 23 H -0.284 1.284 24 C 0.040 3.960 25 C 0.116 3.884 26 C -0.100 4.100 27 H 0.083 0.917 28 H 0.107 0.893 29 H 0.083 0.917 30 H 0.122 0.878 31 H 0.128 0.872 32 H 0.127 0.873 33 H 0.407 0.593 34 H 0.073 0.927 35 H 0.091 0.909 36 H 0.026 0.974 37 H 0.099 0.901 38 H -0.008 1.008 39 H 0.032 0.968 40 H 0.261 0.739 41 H 0.028 0.972 42 H 0.083 0.917 43 H 0.069 0.931 44 H 0.079 0.921 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.398 1.736 0.423 27.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.316 4.316 2 S 0.132 5.868 3 C -0.181 4.181 4 C -0.181 4.181 5 C -0.102 4.102 6 C -0.177 4.177 7 C 0.092 3.908 8 N -0.339 5.339 9 C 0.408 3.592 10 O -0.453 6.453 11 N -0.355 5.355 12 C 0.009 3.991 13 C -0.079 4.079 14 N -0.260 5.260 15 C 0.069 3.931 16 C -0.548 4.548 17 H 0.083 0.917 18 C -0.146 4.146 19 N -0.537 5.537 20 Si 0.726 3.274 21 H -0.196 1.196 22 H -0.211 1.211 23 H -0.210 1.210 24 C -0.089 4.089 25 C -0.008 4.008 26 C -0.125 4.125 27 H 0.102 0.898 28 H 0.125 0.875 29 H 0.102 0.898 30 H 0.140 0.860 31 H 0.146 0.854 32 H 0.145 0.855 33 H 0.246 0.754 34 H 0.091 0.909 35 H 0.109 0.891 36 H 0.044 0.956 37 H 0.117 0.883 38 H 0.009 0.991 39 H 0.050 0.950 40 H 0.071 0.929 41 H 0.046 0.954 42 H 0.101 0.899 43 H 0.087 0.913 44 H 0.097 0.903 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -26.645 0.232 1.105 26.668 hybrid contribution 0.093 0.885 -0.457 1.000 sum -26.552 1.117 0.648 26.583 Atomic orbital electron populations 1.23681 0.95318 1.07010 1.05558 1.85739 1.05623 1.03020 1.92388 1.21579 0.96119 0.96581 1.03781 1.21074 0.98013 0.93176 1.05791 1.20760 0.95683 0.95205 0.98534 1.20907 0.92083 0.98899 1.05852 1.17357 0.82627 0.92516 0.98331 1.42829 1.05787 1.31429 1.53898 1.15821 0.80726 0.83291 0.79380 1.90917 1.79350 1.23180 1.51816 1.47451 1.07980 1.30508 1.49574 1.21821 0.86850 0.97687 0.92714 1.22376 0.95859 0.91531 0.98154 1.62098 1.03697 1.26630 1.33553 1.19737 0.83658 0.96204 0.93544 1.21170 0.92464 1.47072 0.94049 0.91687 1.24998 0.98720 0.95551 0.95362 1.69964 1.19280 1.50010 1.14465 0.86433 0.81525 0.77868 0.81550 1.19587 1.21095 1.21016 1.22381 0.92207 1.00312 0.94047 1.21834 0.96336 0.87556 0.95049 1.20907 0.95050 0.95355 1.01228 0.89803 0.87462 0.89770 0.85971 0.85396 0.85466 0.75427 0.90874 0.89087 0.95603 0.88291 0.99061 0.95022 0.92916 0.95428 0.89914 0.91310 0.90270 0.83545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.15 101.05 0.92 0.02 16 2 S -0.11 -1.17 22.56 -107.50 -2.43 -3.59 16 3 C -0.07 -0.79 6.11 -39.07 -0.24 -1.03 16 4 C -0.16 -1.46 9.36 -39.33 -0.37 -1.83 16 5 C -0.08 -0.69 10.03 -39.64 -0.40 -1.09 16 6 C -0.15 -1.45 9.96 -39.34 -0.39 -1.84 16 7 C 0.19 2.30 6.28 -83.72 -0.53 1.77 16 8 N -0.69 -8.22 5.24 -14.24 -0.07 -8.29 16 9 C 0.71 10.78 8.15 -86.91 -0.71 10.07 16 10 O -0.58 -10.63 13.29 5.29 0.07 -10.56 16 11 N -0.62 -9.14 3.01 -178.19 -0.54 -9.67 16 12 C 0.13 2.12 6.61 -3.60 -0.02 2.09 16 13 C 0.05 0.94 5.46 -3.70 -0.02 0.92 16 14 N -0.53 -10.79 4.62 -235.75 -1.09 -11.88 16 15 C 0.19 4.83 4.72 -4.97 -0.02 4.81 16 16 C -0.51 -13.80 8.41 -34.44 -0.29 -14.09 16 17 H 0.06 1.74 7.13 -52.49 -0.37 1.36 16 18 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 19 N -0.90 -26.17 13.29 55.43 0.74 -25.43 16 20 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 21 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 C 0.04 0.65 5.62 -3.69 -0.02 0.63 16 25 C 0.12 1.46 6.53 -3.60 -0.02 1.43 16 26 C -0.10 -1.37 8.43 -39.18 -0.33 -1.70 16 27 H 0.08 0.43 7.75 -51.93 -0.40 0.03 16 28 H 0.11 0.50 8.14 -51.92 -0.42 0.08 16 29 H 0.08 0.46 7.75 -51.93 -0.40 0.05 16 30 H 0.12 0.86 5.87 -52.49 -0.31 0.55 16 31 H 0.13 0.72 8.06 -52.49 -0.42 0.29 16 32 H 0.13 0.89 8.06 -52.48 -0.42 0.47 16 33 H 0.41 3.65 6.36 -40.82 -0.26 3.39 16 34 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.09 1.48 7.04 -51.93 -0.37 1.12 16 36 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.10 1.99 6.67 -51.93 -0.35 1.65 16 38 H -0.01 -0.23 8.12 -51.93 -0.42 -0.65 16 39 H 0.03 0.84 7.97 -51.93 -0.41 0.42 16 40 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 41 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.08 1.26 7.99 -51.93 -0.41 0.85 16 43 H 0.07 0.63 5.75 -51.93 -0.30 0.33 16 44 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 45 H 0.15 2.37 6.29 -52.48 -0.33 2.04 16 LS Contribution 372.97 15.07 5.62 5.62 Total: -1.00 -32.54 372.97 -11.69 -44.23 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -6.43 Total: 1.76 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: -2.53 Total: 1.60 kcal Atomic # 7 Polarization: -54.31 SS G_CDS: -0.96 Total: -55.27 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.07 Total: -10.56 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: -1.17 SS G_CDS: -2.43 Total: -3.59 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.54 -11.69 -44.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603839488.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.690 kcal (2) G-P(sol) polarization free energy of solvation -32.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds