Wall clock time and date at job start Tue Mar 31 2020 18:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.76201 * 103.00073 * 2 1 4 4 C 1.39042 * 120.04403 * 359.97438 * 3 2 1 5 5 C 1.38099 * 120.05777 * 179.97438 * 4 3 2 6 6 C 1.38205 * 120.14979 * 359.97438 * 5 4 3 7 7 C 1.38917 * 120.09072 * 0.02562 * 6 5 4 8 8 N 1.39944 * 120.02830 * 179.97438 * 7 6 5 9 9 C 1.34779 * 119.99381 * 144.32487 * 8 7 6 10 10 O 1.21586 * 120.00122 * 4.51366 * 9 8 7 11 11 N 1.34781 * 119.99648 * 184.51570 * 9 8 7 12 12 C 1.47082 * 120.87730 * 174.47141 * 11 9 8 13 13 C 1.53238 * 108.52058 * 129.08603 * 12 11 9 14 14 N 1.46899 * 109.34165 * 53.82865 * 13 12 11 15 15 C 1.46903 * 111.00187 * 172.74894 * 14 13 12 16 16 C 1.50705 * 109.46564 * 294.29730 * 15 14 13 17 17 H 1.07995 * 120.00398 * 0.02562 * 16 15 14 18 18 C 1.37871 * 119.99561 * 179.97438 * 16 15 14 19 19 N 1.31518 * 120.00542 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00088 * 180.02562 * 18 16 15 21 21 H 1.48508 * 109.46869 * 0.02562 * 20 18 16 22 22 H 1.48493 * 109.47460 * 120.00097 * 20 18 16 23 23 H 1.48506 * 109.47517 * 240.00465 * 20 18 16 24 24 C 1.46906 * 111.26810 * 296.89310 * 14 13 12 25 25 C 1.47078 * 120.88029 * 354.74519 * 11 9 8 26 26 C 1.38730 * 119.93674 * 0.27531 * 7 6 5 27 27 H 1.08997 * 109.47048 * 59.99991 * 1 2 3 28 28 H 1.09002 * 109.46764 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47003 * 299.99874 * 1 2 3 30 30 H 1.07997 * 119.97038 * 0.02562 * 4 3 2 31 31 H 1.08000 * 119.92738 * 179.97438 * 5 4 3 32 32 H 1.08004 * 119.95278 * 179.97438 * 6 5 4 33 33 H 0.96999 * 120.00720 * 324.32788 * 8 7 6 34 34 H 1.09001 * 109.62622 * 248.79099 * 12 11 9 35 35 H 1.08995 * 109.63265 * 9.37604 * 12 11 9 36 36 H 1.09003 * 109.49607 * 293.86514 * 13 12 11 37 37 H 1.09004 * 109.49138 * 173.78421 * 13 12 11 38 38 H 1.08994 * 109.47020 * 54.29745 * 15 14 13 39 39 H 1.08997 * 109.46915 * 174.29774 * 15 14 13 40 40 H 0.97002 * 120.00570 * 180.02562 * 19 18 16 41 41 H 1.09000 * 109.48924 * 303.14801 * 24 14 13 42 42 H 1.08997 * 109.49664 * 183.06555 * 24 14 13 43 43 H 1.08993 * 109.63037 * 350.62051 * 25 11 9 44 44 H 1.08995 * 109.62780 * 111.20719 * 25 11 9 45 45 H 1.08003 * 120.06812 * 179.69992 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1942 2.6659 -0.0005 5 6 1.5046 4.0116 0.0000 6 6 2.8251 4.4194 0.0016 7 6 3.8452 3.4765 0.0021 8 7 5.1819 3.8909 0.0032 9 6 6.1058 3.1846 0.6845 10 8 5.7945 2.1434 1.2298 11 7 7.3746 3.6325 0.7613 12 6 8.3691 2.9433 1.5976 13 6 9.6161 2.6738 0.7488 14 7 10.0760 3.9323 0.1465 15 6 11.3650 3.7501 -0.5342 16 6 12.4278 3.4211 0.4824 17 1 12.1713 3.3537 1.5293 18 6 13.7273 3.2052 0.0757 19 7 14.0396 3.2867 -1.1992 20 14 15.0446 2.7967 1.3356 21 1 14.4397 2.7644 2.6915 22 1 15.6324 1.4690 1.0246 23 1 16.1088 3.8316 1.2924 24 6 9.0695 4.4831 -0.7708 25 6 7.8000 4.8268 0.0157 26 6 3.5377 2.1237 -0.0047 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 0.1614 2.3504 -0.0005 31 1 0.7136 4.7469 -0.0008 32 1 3.0642 5.4726 0.0016 33 1 5.4436 4.6864 -0.4862 34 1 8.6334 3.5736 2.4467 35 1 7.9572 1.9989 1.9532 36 1 9.3727 1.9611 -0.0392 37 1 10.4042 2.2635 1.3802 38 1 11.2843 2.9343 -1.2525 39 1 11.6332 4.6686 -1.0561 40 1 14.9539 3.1344 -1.4854 41 1 8.8337 3.7452 -1.5376 42 1 9.4610 5.3849 -1.2415 43 1 7.0119 5.1276 -0.6744 44 1 8.0096 5.6381 0.7127 45 1 4.3291 1.3889 -0.0092 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603839488.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:27 Heat of formation + Delta-G solvation = 1.468772 kcal Electronic energy + Delta-G solvation = -26008.918773 eV Core-core repulsion = 22345.281601 eV Total energy + Delta-G solvation = -3663.637172 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.97823 -40.11282 -38.92494 -36.14693 -35.90104 -34.39901 -32.26943 -31.96108 -31.15500 -30.01113 -29.21355 -27.23648 -24.93099 -24.25668 -23.94146 -23.41677 -22.08253 -20.63058 -19.75511 -18.76815 -18.44565 -17.47166 -17.21138 -16.97389 -16.70810 -16.19078 -16.03831 -15.87603 -15.49970 -15.36584 -15.16384 -15.09414 -14.75301 -14.58499 -14.37154 -14.10076 -13.76851 -13.64264 -13.41620 -13.12656 -12.82900 -12.77258 -12.62184 -12.54043 -12.37176 -12.32681 -12.18314 -11.78253 -11.67418 -11.37491 -11.24051 -11.02263 -10.63282 -10.56356 -9.90878 -9.24792 -9.06159 -8.42677 -8.21739 -6.31360 0.16715 0.35008 0.55772 1.40436 1.41493 1.42508 1.52133 1.55548 1.91112 2.39882 2.68580 2.73898 3.10480 3.19764 3.86423 3.95290 4.01000 4.07719 4.12394 4.22074 4.22617 4.28264 4.29235 4.38741 4.43833 4.50766 4.58010 4.67794 4.77801 4.82586 4.84715 4.92078 4.99058 5.12561 5.17954 5.22116 5.28155 5.34809 5.41427 5.46759 5.63072 5.80331 5.97483 6.01997 6.22131 6.55549 6.72845 6.84448 7.32474 7.38490 8.89545 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.024397 B = 0.002133 C = 0.002035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.386379 B =13123.906512 C =13753.135589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 S -0.176 6.176 3 C -0.077 4.077 4 C -0.152 4.152 5 C -0.074 4.074 6 C -0.145 4.145 7 C 0.166 3.834 8 N -0.674 5.674 9 C 0.703 3.297 10 O -0.613 6.613 11 N -0.621 5.621 12 C 0.145 3.855 13 C 0.056 3.944 14 N -0.536 5.536 15 C 0.208 3.792 16 C -0.522 4.522 17 H 0.066 0.934 18 C 0.001 3.999 19 N -0.934 5.934 20 Si 0.968 3.032 21 H -0.262 1.262 22 H -0.282 1.282 23 H -0.278 1.278 24 C 0.036 3.964 25 C 0.124 3.876 26 C -0.130 4.130 27 H 0.098 0.902 28 H 0.123 0.877 29 H 0.096 0.904 30 H 0.150 0.850 31 H 0.168 0.832 32 H 0.159 0.841 33 H 0.422 0.578 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.007 0.993 37 H 0.082 0.918 38 H -0.043 1.043 39 H 0.013 0.987 40 H 0.264 0.736 41 H 0.016 0.984 42 H 0.094 0.906 43 H 0.110 0.890 44 H 0.096 0.904 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.283 3.953 1.243 30.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.297 4.297 2 S 0.066 5.934 3 C -0.190 4.190 4 C -0.177 4.177 5 C -0.094 4.094 6 C -0.168 4.168 7 C 0.070 3.930 8 N -0.325 5.325 9 C 0.405 3.595 10 O -0.493 6.493 11 N -0.358 5.358 12 C 0.021 3.979 13 C -0.073 4.073 14 N -0.260 5.260 15 C 0.082 3.918 16 C -0.560 4.560 17 H 0.084 0.916 18 C -0.197 4.197 19 N -0.575 5.575 20 Si 0.793 3.207 21 H -0.186 1.186 22 H -0.208 1.208 23 H -0.204 1.204 24 C -0.093 4.093 25 C 0.002 3.998 26 C -0.156 4.156 27 H 0.117 0.883 28 H 0.141 0.859 29 H 0.115 0.885 30 H 0.167 0.833 31 H 0.186 0.814 32 H 0.176 0.824 33 H 0.264 0.736 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.025 0.975 37 H 0.100 0.900 38 H -0.025 1.025 39 H 0.031 0.969 40 H 0.073 0.927 41 H 0.034 0.966 42 H 0.112 0.888 43 H 0.128 0.872 44 H 0.114 0.886 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -29.569 2.489 1.907 29.735 hybrid contribution 0.843 0.178 -0.777 1.160 sum -28.726 2.667 1.130 28.871 Atomic orbital electron populations 1.23765 0.90609 1.08514 1.06840 1.85938 1.10883 1.04014 1.92588 1.21659 0.96015 0.96996 1.04358 1.21474 0.98647 0.93293 1.04238 1.21271 0.96293 0.95503 0.96358 1.21268 0.91675 0.99788 1.04052 1.17599 0.83086 0.92535 0.99814 1.42585 1.05397 1.31312 1.53170 1.15955 0.81081 0.83002 0.79413 1.90905 1.80015 1.24933 1.53457 1.47437 1.07719 1.30986 1.49614 1.21560 0.85709 0.98103 0.92498 1.22288 0.96743 0.90670 0.97598 1.62021 1.03154 1.26945 1.33920 1.19389 0.86074 0.93782 0.92586 1.21495 0.93278 1.46779 0.94437 0.91552 1.25906 1.01161 0.95355 0.97313 1.70086 1.19934 1.51038 1.16447 0.85342 0.78481 0.77597 0.79247 1.18559 1.20802 1.20372 1.22546 0.92867 1.00077 0.93833 1.21942 0.95532 0.86815 0.95560 1.20753 0.95208 0.95674 1.04008 0.88275 0.85886 0.88532 0.83281 0.81439 0.82359 0.73648 0.89646 0.89637 0.97487 0.89994 1.02539 0.96882 0.92725 0.96582 0.88820 0.87163 0.88616 0.87402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.31 9.15 113.37 1.04 -0.27 16 2 S -0.18 -3.84 22.56 -56.49 -1.27 -5.11 16 3 C -0.08 -1.80 6.11 22.60 0.14 -1.66 16 4 C -0.15 -2.43 9.36 22.43 0.21 -2.22 16 5 C -0.07 -0.94 10.03 22.23 0.22 -0.72 16 6 C -0.15 -2.23 9.96 22.42 0.22 -2.00 16 7 C 0.17 3.86 6.28 38.13 0.24 4.10 16 8 N -0.67 -15.15 5.24 -317.24 -1.66 -16.81 16 9 C 0.70 21.41 8.15 179.05 1.46 22.87 16 10 O -0.61 -23.64 13.29 -3.99 -0.05 -23.69 16 11 N -0.62 -17.95 3.01 -835.94 -2.52 -20.46 16 12 C 0.14 4.70 6.61 86.35 0.57 5.27 16 13 C 0.06 2.21 5.46 86.38 0.47 2.68 16 14 N -0.54 -22.06 4.62 -899.78 -4.16 -26.22 16 15 C 0.21 10.82 4.72 85.56 0.40 11.22 16 16 C -0.52 -28.96 8.41 25.60 0.22 -28.75 16 17 H 0.07 3.59 7.13 -2.91 -0.02 3.57 16 18 C 0.00 0.04 5.46 84.65 0.46 0.50 16 19 N -0.93 -55.81 13.29 21.45 0.28 -55.52 16 20 Si 0.97 43.98 29.54 68.60 2.03 46.01 16 21 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 22 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 23 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 24 C 0.04 1.15 5.62 86.38 0.49 1.63 16 25 C 0.12 2.86 6.53 86.35 0.56 3.42 16 26 C -0.13 -3.70 8.43 22.53 0.19 -3.51 16 27 H 0.10 0.73 7.75 -2.39 -0.02 0.71 16 28 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.10 0.77 7.75 -2.39 -0.02 0.75 16 30 H 0.15 1.49 5.87 -2.91 -0.02 1.48 16 31 H 0.17 0.85 8.06 -2.91 -0.02 0.83 16 32 H 0.16 1.41 8.06 -2.91 -0.02 1.39 16 33 H 0.42 6.35 6.36 -92.71 -0.59 5.76 16 34 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 35 H 0.09 2.89 7.04 -2.39 -0.02 2.88 16 36 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 37 H 0.08 3.46 6.67 -2.39 -0.02 3.44 16 38 H -0.04 -2.50 8.12 -2.39 -0.02 -2.52 16 39 H 0.01 0.72 7.97 -2.39 -0.02 0.70 16 40 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 41 H 0.02 0.55 8.14 -2.39 -0.02 0.53 16 42 H 0.09 2.79 7.99 -2.39 -0.02 2.77 16 43 H 0.11 1.64 5.75 -2.39 -0.01 1.62 16 44 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 45 H 0.11 3.86 6.29 -2.91 -0.02 3.84 16 Total: -1.00 -75.91 372.97 -0.04 -75.95 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: 0.42 Total: 13.31 kcal Atomic # 6 Polarization: 5.66 SS G_CDS: 6.89 Total: 12.55 kcal Atomic # 7 Polarization: -110.96 SS G_CDS: -8.05 Total: -119.02 kcal Atomic # 8 Polarization: -23.64 SS G_CDS: -0.05 Total: -23.69 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Atomic # 16 Polarization: -3.84 SS G_CDS: -1.27 Total: -5.11 kcal Total: -75.91 -0.04 -75.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603839488.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.419 kcal (2) G-P(sol) polarization free energy of solvation -75.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds