Wall clock time and date at job start Tue Mar 31 2020 18:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86795 * 119.99964 * 2 1 4 4 H 1.48504 * 109.47442 * 270.00585 * 3 2 1 5 5 H 1.48499 * 109.47140 * 30.00734 * 3 2 1 6 6 H 1.48502 * 109.47105 * 150.00433 * 3 2 1 7 7 C 1.37875 * 119.99882 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00214 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99919 * 179.97438 * 7 2 1 10 10 N 1.46898 * 109.46851 * 179.97438 * 9 7 2 11 11 C 1.46963 * 110.99863 * 170.00004 * 10 9 7 12 12 C 1.53046 * 109.36422 * 183.19095 * 11 10 9 13 13 N 1.46961 * 109.36343 * 301.59758 * 12 11 10 14 14 C 1.46909 * 110.99684 * 183.19080 * 13 12 11 15 15 C 1.52995 * 109.47078 * 75.77911 * 14 13 12 16 16 O 1.42901 * 109.47284 * 65.05231 * 15 14 13 17 17 C 1.35898 * 117.00159 * 179.97438 * 16 15 14 18 18 C 1.38760 * 120.05599 * 0.04254 * 17 16 15 19 19 C 1.38120 * 119.94415 * 179.97438 * 18 17 16 20 20 C 1.38288 * 120.05751 * 359.97438 * 19 18 17 21 21 C 1.38245 * 120.11039 * 359.97438 * 20 19 18 22 22 N 1.48003 * 119.97119 * 179.97438 * 21 20 19 23 23 O 1.21804 * 119.99875 * 180.02562 * 22 21 20 24 24 O 1.21803 * 120.00203 * 0.02562 * 22 21 20 25 25 C 1.38163 * 120.05690 * 0.02562 * 21 20 19 26 26 C 1.46949 * 110.87907 * 59.32578 * 13 12 11 27 27 C 1.46952 * 111.00579 * 293.80111 * 10 9 7 28 28 H 0.96998 * 119.99717 * 359.97438 * 1 2 3 29 29 H 1.08993 * 109.46884 * 60.00005 * 9 7 2 30 30 H 1.08993 * 109.47110 * 299.99978 * 9 7 2 31 31 H 1.09002 * 109.48575 * 63.22098 * 11 10 9 32 32 H 1.08995 * 109.50427 * 303.16851 * 11 10 9 33 33 H 1.09004 * 109.49030 * 181.63559 * 12 11 10 34 34 H 1.09001 * 109.49491 * 61.56651 * 12 11 10 35 35 H 1.09000 * 109.46973 * 315.77507 * 14 13 12 36 36 H 1.09006 * 109.46603 * 195.77879 * 14 13 12 37 37 H 1.09002 * 109.47540 * 305.04996 * 15 14 13 38 38 H 1.09000 * 109.47054 * 185.05105 * 15 14 13 39 39 H 1.07997 * 120.02652 * 0.02562 * 18 17 16 40 40 H 1.07997 * 119.96874 * 179.97438 * 19 18 17 41 41 H 1.07999 * 119.94529 * 180.02562 * 20 19 18 42 42 H 1.07999 * 120.03340 * 179.72463 * 25 21 20 43 43 H 1.08991 * 109.49443 * 60.64628 * 26 13 12 44 44 H 1.09005 * 109.48980 * 180.71427 * 26 13 12 45 45 H 1.09011 * 109.48866 * 296.78143 * 27 10 9 46 46 H 1.08999 * 109.49044 * 56.84195 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 7 4.0012 -2.5790 -0.0010 11 6 5.4505 -2.6253 -0.2398 12 6 5.9067 -4.0844 -0.3114 13 7 5.5607 -4.7653 0.9442 14 6 6.0505 -6.1503 0.9443 15 6 7.5615 -6.1570 1.1837 16 8 7.8384 -5.6592 2.4943 17 6 9.1434 -5.5995 2.8687 18 6 10.1374 -6.0108 1.9922 19 6 11.4631 -5.9486 2.3749 20 6 11.8002 -5.4765 3.6302 21 6 10.8118 -5.0651 4.5049 22 7 11.1761 -4.5609 5.8479 23 8 10.3056 -4.1988 6.6191 24 8 12.3462 -4.5080 6.1819 25 6 9.4843 -5.1253 4.1269 26 6 4.1115 -4.7191 1.1829 27 6 3.6552 -3.2599 1.2545 28 1 -0.4849 0.8401 0.0004 29 1 3.8752 -0.6805 0.8888 30 1 3.8745 -0.6801 -0.8911 31 1 5.9696 -2.1215 0.5756 32 1 5.6804 -2.1258 -1.1809 33 1 6.9860 -4.1212 -0.4595 34 1 5.4080 -4.5811 -1.1437 35 1 5.8330 -6.6126 -0.0186 36 1 5.5545 -6.7110 1.7367 37 1 8.0495 -5.5227 0.4436 38 1 7.9390 -7.1756 1.0947 39 1 9.8747 -6.3784 1.0112 40 1 12.2370 -6.2690 1.6932 41 1 12.8373 -5.4282 3.9274 42 1 8.7122 -4.8081 4.8122 43 1 3.5924 -5.2228 0.3677 44 1 3.8819 -5.2184 2.1243 45 1 4.1540 -2.7633 2.0869 46 1 2.5760 -3.2232 1.4027 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611175627.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:14 Heat of formation + Delta-G solvation = 9.763515 kcal Electronic energy + Delta-G solvation = -28274.200976 eV Core-core repulsion = 24168.170620 eV Total energy + Delta-G solvation = -4106.030356 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.47051 -40.76556 -39.05974 -37.99636 -36.83511 -35.41120 -32.59940 -32.40066 -31.44572 -30.61526 -29.98620 -27.87211 -26.95571 -25.16447 -23.46672 -23.21998 -23.07380 -21.75310 -21.02095 -19.93086 -19.32292 -18.94473 -17.81292 -17.58813 -16.95885 -16.79825 -16.77593 -16.42643 -15.53740 -14.96402 -14.68811 -14.52618 -14.48092 -14.28895 -13.87196 -13.78453 -13.44782 -13.25459 -12.89034 -12.64846 -12.39962 -12.23610 -11.89455 -11.86211 -11.73137 -11.56758 -11.45995 -11.39955 -11.38362 -10.97052 -10.86256 -10.61774 -10.44150 -10.12852 -10.10046 -9.85941 -9.30108 -9.01137 -8.59504 -8.32336 -7.42239 -6.08056 -4.05652 -0.55193 0.53758 0.99434 1.01606 2.61743 2.82196 3.26705 3.34621 3.36961 3.77310 3.92368 4.13299 4.22111 4.30176 4.39885 4.44743 4.55392 4.64031 4.68562 4.83350 4.96332 5.08956 5.19755 5.24051 5.25763 5.35809 5.40613 5.42230 5.48783 5.56236 5.59931 5.67856 5.78470 5.91044 6.01068 6.07546 6.22417 6.43683 6.58942 6.74523 6.79427 6.92964 7.03950 7.12634 7.34185 7.55833 7.85889 8.00155 8.62178 8.99290 9.53740 11.04942 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014061 B = 0.002279 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.895467 B =12285.075453 C =13386.078074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.068 3.932 3 Si 0.875 3.125 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.510 4.510 8 H 0.080 0.920 9 C 0.163 3.837 10 N -0.529 5.529 11 C 0.054 3.946 12 C 0.059 3.941 13 N -0.535 5.535 14 C 0.053 3.947 15 C 0.064 3.936 16 O -0.283 6.283 17 C 0.146 3.854 18 C -0.165 4.165 19 C -0.075 4.075 20 C -0.102 4.102 21 C -0.004 4.004 22 N 0.027 4.973 23 O -0.152 6.152 24 O -0.158 6.158 25 C -0.094 4.094 26 C 0.060 3.940 27 C 0.066 3.934 28 H 0.264 0.736 29 H -0.010 1.010 30 H 0.023 0.977 31 H 0.031 0.969 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.042 0.958 35 H 0.062 0.938 36 H 0.086 0.914 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.146 0.854 40 H 0.149 0.851 41 H 0.153 0.847 42 H 0.162 0.838 43 H 0.041 0.959 44 H 0.074 0.926 45 H 0.031 0.969 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.444 -16.944 2.347 29.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.133 4.133 3 Si 0.702 3.298 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.193 1.193 7 C -0.548 4.548 8 H 0.098 0.902 9 C 0.036 3.964 10 N -0.254 5.254 11 C -0.075 4.075 12 C -0.069 4.069 13 N -0.260 5.260 14 C -0.075 4.075 15 C -0.012 4.012 16 O -0.195 6.195 17 C 0.098 3.902 18 C -0.184 4.184 19 C -0.094 4.094 20 C -0.121 4.121 21 C -0.087 4.087 22 N 0.548 4.452 23 O -0.369 6.369 24 O -0.374 6.374 25 C -0.113 4.113 26 C -0.067 4.067 27 C -0.062 4.062 28 H 0.074 0.926 29 H 0.007 0.993 30 H 0.041 0.959 31 H 0.049 0.951 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.060 0.940 35 H 0.080 0.920 36 H 0.105 0.895 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.164 0.836 40 H 0.167 0.833 41 H 0.171 0.829 42 H 0.180 0.820 43 H 0.060 0.940 44 H 0.092 0.908 45 H 0.049 0.951 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 22.903 -17.003 1.791 28.581 hybrid contribution 0.596 1.070 0.068 1.227 sum 23.499 -15.933 1.858 28.452 Atomic orbital electron populations 1.69892 1.06116 1.26881 1.51000 1.24899 0.94745 0.98878 0.94798 0.86863 0.80352 0.84010 0.78555 1.20180 1.21153 1.19261 1.21009 0.88671 0.94687 1.50447 0.90190 1.20150 0.97090 0.84008 0.95102 1.62120 1.10198 1.19216 1.33879 1.22090 0.90416 0.94567 1.00448 1.22212 0.99178 0.95495 0.90040 1.62151 1.15480 1.13585 1.34822 1.22128 0.92436 0.91368 1.01582 1.23075 0.97943 0.98124 0.82023 1.86287 1.19741 1.79363 1.34112 1.18667 0.84805 0.94478 0.92266 1.21772 0.93237 1.02482 1.00859 1.20971 0.96252 0.97235 0.94935 1.20943 0.99975 0.98127 0.93068 1.20725 0.95090 1.08182 0.84677 1.43569 1.00681 0.98396 1.02601 1.94585 1.44128 1.49702 1.48506 1.94535 1.03207 1.58692 1.80940 1.20126 0.94785 1.00220 0.96206 1.22255 0.85695 0.98412 1.00380 1.22035 1.01894 0.91571 0.90732 0.92635 0.99274 0.95867 0.95077 0.91008 0.91516 0.93970 0.91994 0.89543 0.91428 0.91409 0.83614 0.83309 0.82929 0.82030 0.94047 0.90761 0.95117 0.88856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.37 13.96 55.43 0.77 -26.60 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 3 Si 0.87 21.47 27.47 -169.99 -4.67 16.80 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 7 C -0.51 -14.32 9.03 -34.44 -0.31 -14.63 16 8 H 0.08 2.43 7.38 -52.49 -0.39 2.04 16 9 C 0.16 3.93 3.79 -4.98 -0.02 3.91 16 10 N -0.53 -10.86 4.70 -235.92 -1.11 -11.97 16 11 C 0.05 0.90 5.61 -3.77 -0.02 0.88 16 12 C 0.06 0.76 5.43 -3.77 -0.02 0.74 16 13 N -0.54 -6.86 4.59 -234.47 -1.08 -7.94 16 14 C 0.05 0.48 5.39 -3.82 -0.02 0.45 16 15 C 0.06 0.46 4.93 37.15 0.18 0.64 16 16 O -0.28 -2.79 10.08 -19.42 -0.20 -2.99 16 17 C 0.15 1.26 6.69 -39.21 -0.26 1.00 16 18 C -0.16 -0.98 9.04 -39.43 -0.36 -1.34 16 19 C -0.08 -0.39 10.04 -39.61 -0.40 -0.78 16 20 C -0.10 -0.72 9.55 -39.56 -0.38 -1.10 16 21 C 0.00 -0.04 6.85 -79.98 -0.55 -0.59 16 22 N 0.03 0.32 4.45 33.95 0.15 0.48 16 23 O -0.15 -2.02 18.45 -29.46 -0.54 -2.56 16 24 O -0.16 -1.93 18.44 -29.46 -0.54 -2.48 16 25 C -0.09 -0.92 9.49 -39.43 -0.37 -1.29 16 26 C 0.06 0.88 5.56 -3.77 -0.02 0.86 16 27 C 0.07 1.25 5.43 -3.77 -0.02 1.23 16 28 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 29 H -0.01 -0.26 7.18 -51.93 -0.37 -0.63 16 30 H 0.02 0.56 7.45 -51.93 -0.39 0.17 16 31 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 1.14 8.07 -51.93 -0.42 0.72 16 33 H 0.07 0.71 6.72 -51.93 -0.35 0.36 16 34 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.47 8.00 -51.93 -0.42 0.06 16 36 H 0.09 0.75 7.84 -51.93 -0.41 0.34 16 37 H 0.07 0.45 6.25 -51.93 -0.32 0.12 16 38 H 0.07 0.31 7.66 -51.93 -0.40 -0.09 16 39 H 0.15 0.52 6.30 -52.49 -0.33 0.19 16 40 H 0.15 0.30 8.06 -52.49 -0.42 -0.12 16 41 H 0.15 0.86 7.60 -52.49 -0.40 0.46 16 42 H 0.16 1.64 7.61 -52.49 -0.40 1.24 16 43 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.07 0.97 8.00 -51.93 -0.42 0.55 16 45 H 0.03 0.60 8.14 -51.92 -0.42 0.18 16 46 H 0.09 1.95 6.79 -51.93 -0.35 1.60 16 LS Contribution 376.98 15.07 5.68 5.68 Total: -1.00 -32.89 376.98 -10.83 -43.72 By element: Atomic # 1 Polarization: 2.63 SS G_CDS: -6.64 Total: -4.01 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: -2.66 Total: -8.15 kcal Atomic # 7 Polarization: -44.77 SS G_CDS: -1.26 Total: -46.03 kcal Atomic # 8 Polarization: -6.75 SS G_CDS: -1.28 Total: -8.03 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.67 Total: 16.80 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.89 -10.83 -43.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611175627.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.486 kcal (2) G-P(sol) polarization free energy of solvation -32.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds