Wall clock time and date at job start Tue Mar 31 2020 18:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86795 * 119.99964 * 2 1 4 4 H 1.48504 * 109.47442 * 270.00585 * 3 2 1 5 5 H 1.48499 * 109.47140 * 30.00734 * 3 2 1 6 6 H 1.48502 * 109.47105 * 150.00433 * 3 2 1 7 7 C 1.37875 * 119.99882 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00214 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99919 * 179.97438 * 7 2 1 10 10 N 1.46898 * 109.46851 * 179.97438 * 9 7 2 11 11 C 1.46963 * 110.99863 * 170.00004 * 10 9 7 12 12 C 1.53046 * 109.36422 * 183.19095 * 11 10 9 13 13 N 1.46961 * 109.36343 * 301.59758 * 12 11 10 14 14 C 1.46909 * 110.99684 * 183.19080 * 13 12 11 15 15 C 1.52995 * 109.47078 * 75.77911 * 14 13 12 16 16 O 1.42901 * 109.47284 * 65.05231 * 15 14 13 17 17 C 1.35898 * 117.00159 * 179.97438 * 16 15 14 18 18 C 1.38760 * 120.05599 * 0.04254 * 17 16 15 19 19 C 1.38120 * 119.94415 * 179.97438 * 18 17 16 20 20 C 1.38288 * 120.05751 * 359.97438 * 19 18 17 21 21 C 1.38245 * 120.11039 * 359.97438 * 20 19 18 22 22 N 1.48003 * 119.97119 * 179.97438 * 21 20 19 23 23 O 1.21804 * 119.99875 * 180.02562 * 22 21 20 24 24 O 1.21803 * 120.00203 * 0.02562 * 22 21 20 25 25 C 1.38163 * 120.05690 * 0.02562 * 21 20 19 26 26 C 1.46949 * 110.87907 * 59.32578 * 13 12 11 27 27 C 1.46952 * 111.00579 * 293.80111 * 10 9 7 28 28 H 0.96998 * 119.99717 * 359.97438 * 1 2 3 29 29 H 1.08993 * 109.46884 * 60.00005 * 9 7 2 30 30 H 1.08993 * 109.47110 * 299.99978 * 9 7 2 31 31 H 1.09002 * 109.48575 * 63.22098 * 11 10 9 32 32 H 1.08995 * 109.50427 * 303.16851 * 11 10 9 33 33 H 1.09004 * 109.49030 * 181.63559 * 12 11 10 34 34 H 1.09001 * 109.49491 * 61.56651 * 12 11 10 35 35 H 1.09000 * 109.46973 * 315.77507 * 14 13 12 36 36 H 1.09006 * 109.46603 * 195.77879 * 14 13 12 37 37 H 1.09002 * 109.47540 * 305.04996 * 15 14 13 38 38 H 1.09000 * 109.47054 * 185.05105 * 15 14 13 39 39 H 1.07997 * 120.02652 * 0.02562 * 18 17 16 40 40 H 1.07997 * 119.96874 * 179.97438 * 19 18 17 41 41 H 1.07999 * 119.94529 * 180.02562 * 20 19 18 42 42 H 1.07999 * 120.03340 * 179.72463 * 25 21 20 43 43 H 1.08991 * 109.49443 * 60.64628 * 26 13 12 44 44 H 1.09005 * 109.48980 * 180.71427 * 26 13 12 45 45 H 1.09011 * 109.48866 * 296.78143 * 27 10 9 46 46 H 1.08999 * 109.49044 * 56.84195 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 7 4.0012 -2.5790 -0.0010 11 6 5.4505 -2.6253 -0.2398 12 6 5.9067 -4.0844 -0.3114 13 7 5.5607 -4.7653 0.9442 14 6 6.0505 -6.1503 0.9443 15 6 7.5615 -6.1570 1.1837 16 8 7.8384 -5.6592 2.4943 17 6 9.1434 -5.5995 2.8687 18 6 10.1374 -6.0108 1.9922 19 6 11.4631 -5.9486 2.3749 20 6 11.8002 -5.4765 3.6302 21 6 10.8118 -5.0651 4.5049 22 7 11.1761 -4.5609 5.8479 23 8 10.3056 -4.1988 6.6191 24 8 12.3462 -4.5080 6.1819 25 6 9.4843 -5.1253 4.1269 26 6 4.1115 -4.7191 1.1829 27 6 3.6552 -3.2599 1.2545 28 1 -0.4849 0.8401 0.0004 29 1 3.8752 -0.6805 0.8888 30 1 3.8745 -0.6801 -0.8911 31 1 5.9696 -2.1215 0.5756 32 1 5.6804 -2.1258 -1.1809 33 1 6.9860 -4.1212 -0.4595 34 1 5.4080 -4.5811 -1.1437 35 1 5.8330 -6.6126 -0.0186 36 1 5.5545 -6.7110 1.7367 37 1 8.0495 -5.5227 0.4436 38 1 7.9390 -7.1756 1.0947 39 1 9.8747 -6.3784 1.0112 40 1 12.2370 -6.2690 1.6932 41 1 12.8373 -5.4282 3.9274 42 1 8.7122 -4.8081 4.8122 43 1 3.5924 -5.2228 0.3677 44 1 3.8819 -5.2184 2.1243 45 1 4.1540 -2.7633 2.0869 46 1 2.5760 -3.2232 1.4027 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611175627.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:13 Heat of formation + Delta-G solvation = -13.210047 kcal Electronic energy + Delta-G solvation = -28275.197184 eV Core-core repulsion = 24168.170620 eV Total energy + Delta-G solvation = -4107.026565 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.31791 -41.36718 -40.20338 -38.70938 -37.74579 -36.74374 -34.62067 -32.98590 -32.32162 -31.87118 -30.97649 -29.31797 -27.77888 -26.51289 -24.50417 -24.09551 -23.87831 -23.06984 -22.23325 -20.78505 -20.48202 -19.81459 -18.97473 -18.67955 -18.19562 -17.65109 -17.42548 -17.04085 -16.70907 -16.25682 -16.00160 -15.82522 -15.39760 -15.23179 -15.13033 -14.99130 -14.51479 -14.41401 -14.01079 -13.65962 -13.42918 -13.17567 -13.10669 -13.00008 -12.83346 -12.71603 -12.54242 -12.37153 -12.34863 -12.23700 -12.19846 -12.08833 -11.88016 -11.68590 -11.50862 -11.28949 -10.80568 -10.65292 -9.58012 -9.31844 -9.06900 -8.31274 -6.34608 -1.32183 0.01469 0.25523 0.27710 1.31685 1.33892 1.44193 2.05840 2.28408 2.31533 2.86277 3.01431 3.19188 3.43324 3.62517 3.67104 3.79110 3.91428 3.93332 4.01081 4.14869 4.19923 4.30365 4.32330 4.39078 4.42606 4.47821 4.60169 4.64265 4.71128 4.76832 4.79735 4.89574 4.92384 4.94196 4.98311 4.99693 5.04867 5.10131 5.15333 5.35961 5.49706 5.90108 6.00867 6.10151 6.27728 6.34499 6.40196 6.61859 6.71067 7.29128 8.85130 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014061 B = 0.002279 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.895467 B =12285.075453 C =13386.078074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.009 3.991 3 Si 0.946 3.054 4 H -0.261 1.261 5 H -0.281 1.281 6 H -0.257 1.257 7 C -0.516 4.516 8 H 0.039 0.961 9 C 0.172 3.828 10 N -0.542 5.542 11 C 0.050 3.950 12 C 0.067 3.933 13 N -0.548 5.548 14 C 0.051 3.949 15 C 0.061 3.939 16 O -0.311 6.311 17 C 0.135 3.865 18 C -0.146 4.146 19 C -0.061 4.061 20 C -0.097 4.097 21 C -0.024 4.024 22 N 0.029 4.971 23 O -0.206 6.206 24 O -0.151 6.151 25 C -0.118 4.118 26 C 0.074 3.926 27 C 0.068 3.932 28 H 0.267 0.733 29 H -0.020 1.020 30 H 0.030 0.970 31 H 0.022 0.978 32 H 0.081 0.919 33 H 0.102 0.898 34 H 0.044 0.956 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.104 0.896 39 H 0.181 0.819 40 H 0.193 0.807 41 H 0.168 0.832 42 H 0.140 0.860 43 H 0.039 0.961 44 H 0.088 0.912 45 H 0.017 0.983 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.246 -18.429 -0.112 32.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.189 4.189 3 Si 0.770 3.230 4 H -0.186 1.186 5 H -0.207 1.207 6 H -0.181 1.181 7 C -0.554 4.554 8 H 0.058 0.942 9 C 0.045 3.955 10 N -0.267 5.267 11 C -0.079 4.079 12 C -0.061 4.061 13 N -0.273 5.273 14 C -0.076 4.076 15 C -0.014 4.014 16 O -0.224 6.224 17 C 0.087 3.913 18 C -0.165 4.165 19 C -0.079 4.079 20 C -0.116 4.116 21 C -0.107 4.107 22 N 0.544 4.456 23 O -0.412 6.412 24 O -0.373 6.373 25 C -0.138 4.138 26 C -0.055 4.055 27 C -0.060 4.060 28 H 0.076 0.924 29 H -0.002 1.002 30 H 0.048 0.952 31 H 0.040 0.960 32 H 0.099 0.901 33 H 0.120 0.880 34 H 0.062 0.938 35 H 0.101 0.899 36 H 0.104 0.896 37 H 0.099 0.901 38 H 0.121 0.879 39 H 0.198 0.802 40 H 0.211 0.789 41 H 0.186 0.814 42 H 0.158 0.842 43 H 0.057 0.943 44 H 0.106 0.894 45 H 0.035 0.965 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 26.653 -18.498 -0.629 32.449 hybrid contribution -0.546 1.386 0.743 1.665 sum 26.107 -17.112 0.113 31.215 Atomic orbital electron populations 1.70042 1.08015 1.28128 1.52486 1.25827 0.95617 1.03060 0.94369 0.85727 0.79139 0.78785 0.79358 1.18616 1.20700 1.18111 1.21229 0.90936 0.93289 1.49942 0.94239 1.19905 0.94384 0.86490 0.94708 1.62050 1.13193 1.16889 1.34538 1.22252 0.87460 0.97753 1.00400 1.22174 1.01132 0.92650 0.90120 1.62119 1.13652 1.16571 1.34964 1.22269 0.93809 0.88775 1.02775 1.23256 0.96535 1.00380 0.81189 1.86252 1.20568 1.80008 1.35570 1.18744 0.85207 0.95148 0.92162 1.22199 0.92746 1.00167 1.01374 1.21495 0.97017 0.95146 0.94209 1.21345 1.00038 0.96938 0.93314 1.20895 0.95948 1.10179 0.83651 1.43963 1.00306 0.97855 1.03515 1.94581 1.44304 1.52301 1.50034 1.94483 1.03414 1.57923 1.81439 1.20083 0.94544 1.02047 0.97170 1.22026 0.87454 0.94841 1.01132 1.21952 0.99756 0.94527 0.89780 0.92378 1.00196 0.95213 0.95976 0.90111 0.87975 0.93773 0.89868 0.89563 0.90131 0.87855 0.80170 0.78940 0.81403 0.84186 0.94267 0.89389 0.96468 0.92383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.44 13.96 21.45 0.30 -59.14 16 2 C 0.01 0.52 5.47 84.65 0.46 0.98 16 3 Si 0.95 44.68 27.47 68.60 1.88 46.56 16 4 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 5 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 6 H -0.26 -11.58 6.54 99.48 0.65 -10.93 16 7 C -0.52 -30.13 9.03 25.60 0.23 -29.90 16 8 H 0.04 2.56 7.38 -2.91 -0.02 2.54 16 9 C 0.17 8.43 3.79 85.56 0.32 8.76 16 10 N -0.54 -22.47 4.70 -900.30 -4.23 -26.70 16 11 C 0.05 1.58 5.61 86.31 0.48 2.07 16 12 C 0.07 1.54 5.43 86.31 0.47 2.01 16 13 N -0.55 -12.82 4.59 -895.71 -4.11 -16.93 16 14 C 0.05 0.73 5.39 86.30 0.46 1.19 16 15 C 0.06 0.60 4.93 71.98 0.36 0.95 16 16 O -0.31 -5.39 10.08 -92.40 -0.93 -6.32 16 17 C 0.13 2.03 6.69 22.51 0.15 2.18 16 18 C -0.15 -1.02 9.04 22.37 0.20 -0.81 16 19 C -0.06 -0.30 10.04 22.25 0.22 -0.08 16 20 C -0.10 -1.09 9.55 22.28 0.21 -0.87 16 21 C -0.02 -0.45 6.85 36.36 0.25 -0.21 16 22 N 0.03 0.72 4.45 -46.51 -0.21 0.51 16 23 O -0.21 -6.04 18.45 18.88 0.35 -5.69 16 24 O -0.15 -3.72 18.44 18.88 0.35 -3.37 16 25 C -0.12 -2.34 9.49 22.37 0.21 -2.13 16 26 C 0.07 2.12 5.56 86.31 0.48 2.60 16 27 C 0.07 2.68 5.43 86.31 0.47 3.15 16 28 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 29 H -0.02 -0.99 7.18 -2.39 -0.02 -1.00 16 30 H 0.03 1.41 7.45 -2.39 -0.02 1.40 16 31 H 0.02 0.74 8.14 -2.39 -0.02 0.73 16 32 H 0.08 2.40 8.07 -2.39 -0.02 2.38 16 33 H 0.10 1.66 6.72 -2.39 -0.02 1.65 16 34 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.08 0.89 8.00 -2.39 -0.02 0.87 16 36 H 0.09 1.26 7.84 -2.38 -0.02 1.24 16 37 H 0.08 0.59 6.25 -2.39 -0.01 0.58 16 38 H 0.10 0.32 7.66 -2.39 -0.02 0.30 16 39 H 0.18 0.01 6.30 -2.91 -0.02 -0.01 16 40 H 0.19 -0.63 8.06 -2.91 -0.02 -0.65 16 41 H 0.17 1.34 7.60 -2.91 -0.02 1.32 16 42 H 0.14 3.22 7.61 -2.91 -0.02 3.20 16 43 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.09 2.26 8.00 -2.38 -0.02 2.24 16 45 H 0.02 0.70 8.14 -2.38 -0.02 0.68 16 46 H 0.06 2.63 6.79 -2.39 -0.02 2.61 16 Total: -1.00 -77.72 376.98 -0.68 -78.40 By element: Atomic # 1 Polarization: 1.88 SS G_CDS: 0.93 Total: 2.81 kcal Atomic # 6 Polarization: -15.11 SS G_CDS: 4.99 Total: -10.12 kcal Atomic # 7 Polarization: -94.02 SS G_CDS: -8.25 Total: -102.27 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: -0.24 Total: -15.38 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 1.88 Total: 46.56 kcal Total: -77.72 -0.68 -78.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611175627.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.190 kcal (2) G-P(sol) polarization free energy of solvation -77.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds