Wall clock time and date at job start Tue Mar 31 2020 18:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 120.00179 * 2 1 4 4 H 1.48497 * 109.47166 * 270.00054 * 3 2 1 5 5 H 1.48505 * 109.46744 * 29.99780 * 3 2 1 6 6 H 1.48494 * 109.47262 * 149.99659 * 3 2 1 7 7 C 1.37879 * 119.99831 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99455 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00366 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.47510 * 179.97438 * 9 7 2 11 11 C 1.46959 * 111.00198 * 169.99841 * 10 9 7 12 12 C 1.53048 * 109.36201 * 183.18565 * 11 10 9 13 13 N 1.46949 * 109.37051 * 301.59845 * 12 11 10 14 14 C 1.46899 * 111.00560 * 183.18714 * 13 12 11 15 15 C 1.52999 * 109.46768 * 75.77706 * 14 13 12 16 16 O 1.42902 * 109.46972 * 65.05862 * 15 14 13 17 17 C 1.35902 * 117.00081 * 180.02562 * 16 15 14 18 18 C 1.38752 * 120.05335 * 359.97438 * 17 16 15 19 19 C 1.38125 * 119.94341 * 179.97438 * 18 17 16 20 20 C 1.38288 * 120.05855 * 0.02562 * 19 18 17 21 21 C 1.38254 * 120.10722 * 359.97157 * 20 19 18 22 22 C 1.38160 * 120.05398 * 359.75253 * 21 20 19 23 23 N 1.48009 * 120.02714 * 180.25395 * 22 21 20 24 24 O 1.21799 * 119.99780 * 0.26890 * 23 22 21 25 25 O 1.21795 * 120.00028 * 180.27313 * 23 22 21 26 26 C 1.46959 * 110.87831 * 59.32103 * 13 12 11 27 27 C 1.46957 * 110.99571 * 293.79979 * 10 9 7 28 28 H 0.96995 * 120.00043 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.47183 * 59.99118 * 9 7 2 30 30 H 1.09004 * 109.46996 * 300.00001 * 9 7 2 31 31 H 1.08997 * 109.48460 * 63.22321 * 11 10 9 32 32 H 1.08994 * 109.50530 * 303.16934 * 11 10 9 33 33 H 1.08998 * 109.48506 * 181.62835 * 12 11 10 34 34 H 1.08998 * 109.48888 * 61.56927 * 12 11 10 35 35 H 1.08997 * 109.47173 * 315.78174 * 14 13 12 36 36 H 1.08994 * 109.47197 * 195.78014 * 14 13 12 37 37 H 1.09000 * 109.47405 * 305.06024 * 15 14 13 38 38 H 1.09005 * 109.47291 * 185.05182 * 15 14 13 39 39 H 1.08000 * 120.03332 * 0.02562 * 18 17 16 40 40 H 1.08008 * 119.97239 * 179.97438 * 19 18 17 41 41 H 1.07997 * 119.94786 * 179.97438 * 20 19 18 42 42 H 1.07993 * 119.96998 * 180.02562 * 21 20 19 43 43 H 1.09000 * 109.49160 * 60.64870 * 26 13 12 44 44 H 1.09004 * 109.49190 * 180.71449 * 26 13 12 45 45 H 1.09004 * 109.48914 * 296.77262 * 27 10 9 46 46 H 1.08994 * 109.49028 * 56.84348 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 1.5210 -4.8940 0.2388 12 6 2.5565 -6.0187 0.3104 13 7 3.3195 -6.0593 -0.9449 14 6 4.2741 -7.1758 -0.9449 15 6 3.5244 -8.4878 -1.1849 16 8 2.9553 -8.4783 -2.4957 17 6 2.2503 -9.5781 -2.8702 18 6 2.1095 -10.6448 -1.9941 19 6 1.3920 -11.7613 -2.3769 20 6 0.8146 -11.8168 -3.6322 21 6 0.9535 -10.7552 -4.5070 22 6 1.6654 -9.6339 -4.1267 23 7 1.8088 -8.4954 -5.0615 24 8 1.2950 -8.5448 -6.1647 25 8 2.4407 -7.5091 -4.7276 26 6 4.0042 -4.7810 -1.1831 27 6 2.9687 -3.6562 -1.2548 28 1 -0.4850 0.8400 -0.0004 29 1 0.6247 -2.5570 -0.8896 30 1 0.6241 -2.5567 0.8903 31 1 0.8254 -5.0915 -0.5769 32 1 0.9731 -4.8436 1.1797 33 1 2.0486 -6.9717 0.4582 34 1 3.2356 -5.8353 1.1430 35 1 4.7828 -7.2190 0.0181 36 1 5.0078 -7.0265 -1.7370 37 1 2.7309 -8.5934 -0.4451 38 1 4.2178 -9.3241 -1.0959 39 1 2.5598 -10.6019 -1.0134 40 1 1.2825 -12.5921 -1.6954 41 1 0.2544 -12.6908 -3.9298 42 1 0.5013 -10.8007 -5.4866 43 1 4.6998 -4.5835 -0.3675 44 1 4.5518 -4.8316 -2.1243 45 1 2.2895 -3.8397 -2.0874 46 1 3.4765 -2.7032 -1.4025 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611175713.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:04 Heat of formation + Delta-G solvation = 7.526180 kcal Electronic energy + Delta-G solvation = -29108.855758 eV Core-core repulsion = 25002.728384 eV Total energy + Delta-G solvation = -4106.127374 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.12282 -40.55550 -38.89332 -37.98028 -36.32132 -35.18967 -32.62674 -32.34109 -31.11827 -30.43902 -29.87277 -27.30045 -26.50062 -25.14144 -23.52896 -23.00316 -22.63197 -21.81368 -21.07566 -19.68421 -19.15228 -18.53450 -18.17942 -17.46514 -16.65135 -16.40635 -16.22604 -15.81865 -15.40532 -15.11136 -14.75450 -14.49921 -14.33538 -14.13429 -13.61957 -13.59359 -13.45817 -12.99872 -12.74576 -12.36287 -12.26006 -12.03778 -11.73838 -11.59105 -11.39775 -11.34068 -11.14206 -10.95418 -10.93106 -10.78940 -10.67777 -10.61741 -10.32820 -10.19710 -10.04314 -9.68081 -9.13190 -9.00948 -8.39883 -8.12401 -7.18012 -5.98297 -3.99594 -0.25040 0.59763 1.26005 1.43132 2.54832 2.90487 3.35398 3.41157 3.45159 3.91906 3.94629 4.06982 4.36588 4.44209 4.46179 4.55016 4.63439 4.74958 4.87396 4.97986 5.03428 5.20865 5.26360 5.36759 5.37846 5.41512 5.52388 5.58579 5.62621 5.74409 5.83139 5.86649 5.95855 6.11967 6.20814 6.38758 6.45054 6.65214 6.74980 6.79351 7.19573 7.22894 7.39544 7.43294 7.77268 7.84297 8.13508 8.25635 8.59879 9.07867 9.64451 11.12715 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.017160 B = 0.002515 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.315045 B =11130.276970 C =11727.393873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.898 3.102 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.506 4.506 8 H 0.063 0.937 9 C 0.194 3.806 10 N -0.539 5.539 11 C 0.057 3.943 12 C 0.059 3.941 13 N -0.531 5.531 14 C 0.056 3.944 15 C 0.058 3.942 16 O -0.257 6.257 17 C 0.204 3.796 18 C -0.219 4.219 19 C -0.028 4.028 20 C -0.165 4.165 21 C -0.020 4.020 22 C -0.085 4.085 23 N 0.032 4.968 24 O -0.193 6.193 25 O -0.116 6.116 26 C 0.062 3.938 27 C 0.067 3.933 28 H 0.261 0.739 29 H -0.008 1.008 30 H 0.028 0.972 31 H 0.030 0.970 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.039 0.961 35 H 0.060 0.940 36 H 0.087 0.913 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.149 0.851 40 H 0.143 0.857 41 H 0.145 0.855 42 H 0.157 0.843 43 H 0.037 0.963 44 H 0.074 0.926 45 H 0.032 0.968 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.720 -28.582 -3.045 29.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.147 4.147 3 Si 0.725 3.275 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.545 4.545 8 H 0.081 0.919 9 C 0.069 3.931 10 N -0.264 5.264 11 C -0.072 4.072 12 C -0.069 4.069 13 N -0.256 5.256 14 C -0.073 4.073 15 C -0.017 4.017 16 O -0.167 6.167 17 C 0.153 3.847 18 C -0.238 4.238 19 C -0.046 4.046 20 C -0.184 4.184 21 C -0.039 4.039 22 C -0.169 4.169 23 N 0.551 4.449 24 O -0.398 6.398 25 O -0.341 6.341 26 C -0.066 4.066 27 C -0.062 4.062 28 H 0.070 0.930 29 H 0.010 0.990 30 H 0.046 0.954 31 H 0.048 0.952 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.058 0.942 35 H 0.078 0.922 36 H 0.106 0.894 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.167 0.833 40 H 0.160 0.840 41 H 0.163 0.837 42 H 0.174 0.826 43 H 0.055 0.945 44 H 0.093 0.907 45 H 0.050 0.950 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 5.504 -28.816 -2.745 29.465 hybrid contribution 0.282 1.010 0.017 1.049 sum 5.786 -27.806 -2.727 28.533 Atomic orbital electron populations 1.69962 1.06075 1.26732 1.51085 1.24995 0.94856 0.99307 0.95492 0.86505 0.79749 0.83139 0.78066 1.20676 1.21312 1.19831 1.21147 0.93432 0.89947 1.49943 0.91925 1.19691 0.90064 0.87308 0.96067 1.62302 1.28074 1.02619 1.33411 1.22024 0.94725 0.90109 1.00347 1.22218 0.96408 0.98323 0.89934 1.62104 1.25557 1.03273 1.34664 1.22090 0.94193 0.89603 1.01384 1.23193 0.97300 0.99274 0.81923 1.86573 1.62343 1.33818 1.33919 1.18801 0.88163 0.87291 0.90432 1.21372 1.06967 0.94339 1.01157 1.21397 0.90961 0.96614 0.95644 1.21080 1.03888 0.99373 0.94031 1.20968 0.92335 0.89539 1.01058 1.20586 1.13522 0.91866 0.90976 1.43333 0.98967 1.01724 1.00899 1.94509 1.50095 1.87534 1.07661 1.94677 1.37575 1.20961 1.80911 1.22247 0.96043 0.88130 1.00137 1.21993 0.95536 0.97353 0.91309 0.92953 0.99034 0.95352 0.95173 0.91189 0.91820 0.94246 0.92162 0.89430 0.91219 0.91286 0.83306 0.83951 0.83674 0.82586 0.94454 0.90732 0.94953 0.89515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.26 13.29 55.43 0.74 -26.53 16 2 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 21.98 29.54 -169.99 -5.02 16.96 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.51 -14.46 8.47 -34.44 -0.29 -14.75 16 8 H 0.06 1.76 7.13 -52.48 -0.37 1.39 16 9 C 0.19 5.20 4.72 -4.98 -0.02 5.18 16 10 N -0.54 -11.98 4.70 -235.91 -1.11 -13.09 16 11 C 0.06 1.07 5.61 -3.77 -0.02 1.05 16 12 C 0.06 0.87 5.43 -3.77 -0.02 0.85 16 13 N -0.53 -7.76 4.59 -234.47 -1.08 -8.84 16 14 C 0.06 0.59 5.39 -3.83 -0.02 0.57 16 15 C 0.06 0.51 4.93 37.16 0.18 0.70 16 16 O -0.26 -3.15 8.10 -41.55 -0.34 -3.49 16 17 C 0.20 2.18 6.67 -39.22 -0.26 1.92 16 18 C -0.22 -1.51 9.04 -39.43 -0.36 -1.87 16 19 C -0.03 -0.14 10.04 -39.60 -0.40 -0.54 16 20 C -0.16 -0.91 10.04 -39.56 -0.40 -1.31 16 21 C -0.02 -0.17 9.55 -39.60 -0.38 -0.55 16 22 C -0.08 -1.01 6.87 -79.81 -0.55 -1.55 16 23 N 0.03 0.50 4.45 34.03 0.15 0.65 16 24 O -0.19 -3.01 18.45 -29.46 -0.54 -3.56 16 25 O -0.12 -2.04 17.24 -36.49 -0.63 -2.67 16 26 C 0.06 1.00 5.57 -3.76 -0.02 0.98 16 27 C 0.07 1.36 5.43 -3.76 -0.02 1.34 16 28 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 29 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 30 H 0.03 0.81 8.03 -51.93 -0.42 0.39 16 31 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.07 1.27 8.07 -51.93 -0.42 0.85 16 33 H 0.06 0.78 6.72 -51.93 -0.35 0.43 16 34 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.53 8.00 -51.93 -0.42 0.12 16 36 H 0.09 0.91 7.84 -51.93 -0.41 0.50 16 37 H 0.07 0.56 6.25 -51.93 -0.32 0.24 16 38 H 0.07 0.40 7.66 -51.93 -0.40 0.00 16 39 H 0.15 0.69 6.30 -52.49 -0.33 0.35 16 40 H 0.14 0.27 8.06 -52.48 -0.42 -0.16 16 41 H 0.15 0.38 8.06 -52.49 -0.42 -0.04 16 42 H 0.16 1.11 7.61 -52.49 -0.40 0.71 16 43 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.07 1.10 8.00 -51.93 -0.42 0.68 16 45 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.09 1.87 6.79 -51.93 -0.35 1.52 16 LS Contribution 378.39 15.07 5.70 5.70 Total: -1.00 -34.73 378.39 -11.49 -46.22 By element: Atomic # 1 Polarization: 1.85 SS G_CDS: -6.70 Total: -4.85 kcal Atomic # 6 Polarization: -3.84 SS G_CDS: -2.67 Total: -6.51 kcal Atomic # 7 Polarization: -46.51 SS G_CDS: -1.30 Total: -47.81 kcal Atomic # 8 Polarization: -8.20 SS G_CDS: -1.51 Total: -9.71 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.73 -11.49 -46.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611175713.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.749 kcal (2) G-P(sol) polarization free energy of solvation -34.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds