Wall clock time and date at job start Tue Mar 31 2020 18:26:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31517 * 1
3 3 Si 1.86803 * 120.00179 * 2 1
4 4 H 1.48497 * 109.47166 * 270.00054 * 3 2 1
5 5 H 1.48505 * 109.46744 * 29.99780 * 3 2 1
6 6 H 1.48494 * 109.47262 * 149.99659 * 3 2 1
7 7 C 1.37879 * 119.99831 * 179.97438 * 2 1 3
8 8 H 1.08003 * 119.99455 * 179.97438 * 7 2 1
9 9 C 1.50692 * 120.00366 * 0.02562 * 7 2 1
10 10 N 1.46901 * 109.47510 * 179.97438 * 9 7 2
11 11 C 1.46959 * 111.00198 * 169.99841 * 10 9 7
12 12 C 1.53048 * 109.36201 * 183.18565 * 11 10 9
13 13 N 1.46949 * 109.37051 * 301.59845 * 12 11 10
14 14 C 1.46899 * 111.00560 * 183.18714 * 13 12 11
15 15 C 1.52999 * 109.46768 * 75.77706 * 14 13 12
16 16 O 1.42902 * 109.46972 * 65.05862 * 15 14 13
17 17 C 1.35902 * 117.00081 * 180.02562 * 16 15 14
18 18 C 1.38752 * 120.05335 * 359.97438 * 17 16 15
19 19 C 1.38125 * 119.94341 * 179.97438 * 18 17 16
20 20 C 1.38288 * 120.05855 * 0.02562 * 19 18 17
21 21 C 1.38254 * 120.10722 * 359.97157 * 20 19 18
22 22 C 1.38160 * 120.05398 * 359.75253 * 21 20 19
23 23 N 1.48009 * 120.02714 * 180.25395 * 22 21 20
24 24 O 1.21799 * 119.99780 * 0.26890 * 23 22 21
25 25 O 1.21795 * 120.00028 * 180.27313 * 23 22 21
26 26 C 1.46959 * 110.87831 * 59.32103 * 13 12 11
27 27 C 1.46957 * 110.99571 * 293.79979 * 10 9 7
28 28 H 0.96995 * 120.00043 * 0.02562 * 1 2 3
29 29 H 1.09001 * 109.47183 * 59.99118 * 9 7 2
30 30 H 1.09004 * 109.46996 * 300.00001 * 9 7 2
31 31 H 1.08997 * 109.48460 * 63.22321 * 11 10 9
32 32 H 1.08994 * 109.50530 * 303.16934 * 11 10 9
33 33 H 1.08998 * 109.48506 * 181.62835 * 12 11 10
34 34 H 1.08998 * 109.48888 * 61.56927 * 12 11 10
35 35 H 1.08997 * 109.47173 * 315.78174 * 14 13 12
36 36 H 1.08994 * 109.47197 * 195.78014 * 14 13 12
37 37 H 1.09000 * 109.47405 * 305.06024 * 15 14 13
38 38 H 1.09005 * 109.47291 * 185.05182 * 15 14 13
39 39 H 1.08000 * 120.03332 * 0.02562 * 18 17 16
40 40 H 1.08008 * 119.97239 * 179.97438 * 19 18 17
41 41 H 1.07997 * 119.94786 * 179.97438 * 20 19 18
42 42 H 1.07993 * 119.96998 * 180.02562 * 21 20 19
43 43 H 1.09000 * 109.49160 * 60.64870 * 26 13 12
44 44 H 1.09004 * 109.49190 * 180.71449 * 26 13 12
45 45 H 1.09004 * 109.48914 * 296.77262 * 27 10 9
46 46 H 1.08994 * 109.49028 * 56.84348 * 27 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 2.4967 2.0464 -1.4000
5 1 1.4466 2.6527 0.7000
6 1 3.5467 1.4402 0.7001
7 6 2.0045 -1.1941 0.0005
8 1 3.0846 -1.1940 0.0001
9 6 1.2511 -2.4991 0.0005
10 7 2.2057 -3.6157 0.0005
11 6 1.5210 -4.8940 0.2388
12 6 2.5565 -6.0187 0.3104
13 7 3.3195 -6.0593 -0.9449
14 6 4.2741 -7.1758 -0.9449
15 6 3.5244 -8.4878 -1.1849
16 8 2.9553 -8.4783 -2.4957
17 6 2.2503 -9.5781 -2.8702
18 6 2.1095 -10.6448 -1.9941
19 6 1.3920 -11.7613 -2.3769
20 6 0.8146 -11.8168 -3.6322
21 6 0.9535 -10.7552 -4.5070
22 6 1.6654 -9.6339 -4.1267
23 7 1.8088 -8.4954 -5.0615
24 8 1.2950 -8.5448 -6.1647
25 8 2.4407 -7.5091 -4.7276
26 6 4.0042 -4.7810 -1.1831
27 6 2.9687 -3.6562 -1.2548
28 1 -0.4850 0.8400 -0.0004
29 1 0.6247 -2.5570 -0.8896
30 1 0.6241 -2.5567 0.8903
31 1 0.8254 -5.0915 -0.5769
32 1 0.9731 -4.8436 1.1797
33 1 2.0486 -6.9717 0.4582
34 1 3.2356 -5.8353 1.1430
35 1 4.7828 -7.2190 0.0181
36 1 5.0078 -7.0265 -1.7370
37 1 2.7309 -8.5934 -0.4451
38 1 4.2178 -9.3241 -1.0959
39 1 2.5598 -10.6019 -1.0134
40 1 1.2825 -12.5921 -1.6954
41 1 0.2544 -12.6908 -3.9298
42 1 0.5013 -10.8007 -5.4866
43 1 4.6998 -4.5835 -0.3675
44 1 4.5518 -4.8316 -2.1243
45 1 2.2895 -3.8397 -2.0874
46 1 3.4765 -2.7032 -1.4025
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000611175713.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:26:04
Heat of formation + Delta-G solvation = 7.526180 kcal
Electronic energy + Delta-G solvation = -29108.855758 eV
Core-core repulsion = 25002.728384 eV
Total energy + Delta-G solvation = -4106.127374 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 335.168 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-42.12282 -40.55550 -38.89332 -37.98028 -36.32132 -35.18967 -32.62674 -32.34109
-31.11827 -30.43902 -29.87277 -27.30045 -26.50062 -25.14144 -23.52896 -23.00316
-22.63197 -21.81368 -21.07566 -19.68421 -19.15228 -18.53450 -18.17942 -17.46514
-16.65135 -16.40635 -16.22604 -15.81865 -15.40532 -15.11136 -14.75450 -14.49921
-14.33538 -14.13429 -13.61957 -13.59359 -13.45817 -12.99872 -12.74576 -12.36287
-12.26006 -12.03778 -11.73838 -11.59105 -11.39775 -11.34068 -11.14206 -10.95418
-10.93106 -10.78940 -10.67777 -10.61741 -10.32820 -10.19710 -10.04314 -9.68081
-9.13190 -9.00948 -8.39883 -8.12401 -7.18012 -5.98297 -3.99594 -0.25040
0.59763 1.26005 1.43132 2.54832 2.90487 3.35398 3.41157 3.45159
3.91906 3.94629 4.06982 4.36588 4.44209 4.46179 4.55016 4.63439
4.74958 4.87396 4.97986 5.03428 5.20865 5.26360 5.36759 5.37846
5.41512 5.52388 5.58579 5.62621 5.74409 5.83139 5.86649 5.95855
6.11967 6.20814 6.38758 6.45054 6.65214 6.74980 6.79351 7.19573
7.22894 7.39544 7.43294 7.77268 7.84297 8.13508 8.25635 8.59879
9.07867 9.64451 11.12715
Molecular weight = 335.17amu
Principal moments of inertia in cm(-1)
A = 0.017160 B = 0.002515 C = 0.002387
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1631.315045 B =11130.276970 C =11727.393873
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.899 5.899
2 C 0.055 3.945
3 Si 0.898 3.102
4 H -0.281 1.281
5 H -0.287 1.287
6 H -0.273 1.273
7 C -0.506 4.506
8 H 0.063 0.937
9 C 0.194 3.806
10 N -0.539 5.539
11 C 0.057 3.943
12 C 0.059 3.941
13 N -0.531 5.531
14 C 0.056 3.944
15 C 0.058 3.942
16 O -0.257 6.257
17 C 0.204 3.796
18 C -0.219 4.219
19 C -0.028 4.028
20 C -0.165 4.165
21 C -0.020 4.020
22 C -0.085 4.085
23 N 0.032 4.968
24 O -0.193 6.193
25 O -0.116 6.116
26 C 0.062 3.938
27 C 0.067 3.933
28 H 0.261 0.739
29 H -0.008 1.008
30 H 0.028 0.972
31 H 0.030 0.970
32 H 0.070 0.930
33 H 0.063 0.937
34 H 0.039 0.961
35 H 0.060 0.940
36 H 0.087 0.913
37 H 0.070 0.930
38 H 0.069 0.931
39 H 0.149 0.851
40 H 0.143 0.857
41 H 0.145 0.855
42 H 0.157 0.843
43 H 0.037 0.963
44 H 0.074 0.926
45 H 0.032 0.968
46 H 0.087 0.913
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.720 -28.582 -3.045 29.307
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.539 5.539
2 C -0.147 4.147
3 Si 0.725 3.275
4 H -0.207 1.207
5 H -0.213 1.213
6 H -0.198 1.198
7 C -0.545 4.545
8 H 0.081 0.919
9 C 0.069 3.931
10 N -0.264 5.264
11 C -0.072 4.072
12 C -0.069 4.069
13 N -0.256 5.256
14 C -0.073 4.073
15 C -0.017 4.017
16 O -0.167 6.167
17 C 0.153 3.847
18 C -0.238 4.238
19 C -0.046 4.046
20 C -0.184 4.184
21 C -0.039 4.039
22 C -0.169 4.169
23 N 0.551 4.449
24 O -0.398 6.398
25 O -0.341 6.341
26 C -0.066 4.066
27 C -0.062 4.062
28 H 0.070 0.930
29 H 0.010 0.990
30 H 0.046 0.954
31 H 0.048 0.952
32 H 0.088 0.912
33 H 0.082 0.918
34 H 0.058 0.942
35 H 0.078 0.922
36 H 0.106 0.894
37 H 0.088 0.912
38 H 0.087 0.913
39 H 0.167 0.833
40 H 0.160 0.840
41 H 0.163 0.837
42 H 0.174 0.826
43 H 0.055 0.945
44 H 0.093 0.907
45 H 0.050 0.950
46 H 0.105 0.895
Dipole moment (debyes) X Y Z Total
from point charges 5.504 -28.816 -2.745 29.465
hybrid contribution 0.282 1.010 0.017 1.049
sum 5.786 -27.806 -2.727 28.533
Atomic orbital electron populations
1.69962 1.06075 1.26732 1.51085 1.24995 0.94856 0.99307 0.95492
0.86505 0.79749 0.83139 0.78066 1.20676 1.21312 1.19831 1.21147
0.93432 0.89947 1.49943 0.91925 1.19691 0.90064 0.87308 0.96067
1.62302 1.28074 1.02619 1.33411 1.22024 0.94725 0.90109 1.00347
1.22218 0.96408 0.98323 0.89934 1.62104 1.25557 1.03273 1.34664
1.22090 0.94193 0.89603 1.01384 1.23193 0.97300 0.99274 0.81923
1.86573 1.62343 1.33818 1.33919 1.18801 0.88163 0.87291 0.90432
1.21372 1.06967 0.94339 1.01157 1.21397 0.90961 0.96614 0.95644
1.21080 1.03888 0.99373 0.94031 1.20968 0.92335 0.89539 1.01058
1.20586 1.13522 0.91866 0.90976 1.43333 0.98967 1.01724 1.00899
1.94509 1.50095 1.87534 1.07661 1.94677 1.37575 1.20961 1.80911
1.22247 0.96043 0.88130 1.00137 1.21993 0.95536 0.97353 0.91309
0.92953 0.99034 0.95352 0.95173 0.91189 0.91820 0.94246 0.92162
0.89430 0.91219 0.91286 0.83306 0.83951 0.83674 0.82586 0.94454
0.90732 0.94953 0.89515
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -27.26 13.29 55.43 0.74 -26.53 16
2 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16
3 Si 0.90 21.98 29.54 -169.99 -5.02 16.96 16
4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16
5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16
6 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16
7 C -0.51 -14.46 8.47 -34.44 -0.29 -14.75 16
8 H 0.06 1.76 7.13 -52.48 -0.37 1.39 16
9 C 0.19 5.20 4.72 -4.98 -0.02 5.18 16
10 N -0.54 -11.98 4.70 -235.91 -1.11 -13.09 16
11 C 0.06 1.07 5.61 -3.77 -0.02 1.05 16
12 C 0.06 0.87 5.43 -3.77 -0.02 0.85 16
13 N -0.53 -7.76 4.59 -234.47 -1.08 -8.84 16
14 C 0.06 0.59 5.39 -3.83 -0.02 0.57 16
15 C 0.06 0.51 4.93 37.16 0.18 0.70 16
16 O -0.26 -3.15 8.10 -41.55 -0.34 -3.49 16
17 C 0.20 2.18 6.67 -39.22 -0.26 1.92 16
18 C -0.22 -1.51 9.04 -39.43 -0.36 -1.87 16
19 C -0.03 -0.14 10.04 -39.60 -0.40 -0.54 16
20 C -0.16 -0.91 10.04 -39.56 -0.40 -1.31 16
21 C -0.02 -0.17 9.55 -39.60 -0.38 -0.55 16
22 C -0.08 -1.01 6.87 -79.81 -0.55 -1.55 16
23 N 0.03 0.50 4.45 34.03 0.15 0.65 16
24 O -0.19 -3.01 18.45 -29.46 -0.54 -3.56 16
25 O -0.12 -2.04 17.24 -36.49 -0.63 -2.67 16
26 C 0.06 1.00 5.57 -3.76 -0.02 0.98 16
27 C 0.07 1.36 5.43 -3.76 -0.02 1.34 16
28 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16
29 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16
30 H 0.03 0.81 8.03 -51.93 -0.42 0.39 16
31 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16
32 H 0.07 1.27 8.07 -51.93 -0.42 0.85 16
33 H 0.06 0.78 6.72 -51.93 -0.35 0.43 16
34 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16
35 H 0.06 0.53 8.00 -51.93 -0.42 0.12 16
36 H 0.09 0.91 7.84 -51.93 -0.41 0.50 16
37 H 0.07 0.56 6.25 -51.93 -0.32 0.24 16
38 H 0.07 0.40 7.66 -51.93 -0.40 0.00 16
39 H 0.15 0.69 6.30 -52.49 -0.33 0.35 16
40 H 0.14 0.27 8.06 -52.48 -0.42 -0.16 16
41 H 0.15 0.38 8.06 -52.49 -0.42 -0.04 16
42 H 0.16 1.11 7.61 -52.49 -0.40 0.71 16
43 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16
44 H 0.07 1.10 8.00 -51.93 -0.42 0.68 16
45 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16
46 H 0.09 1.87 6.79 -51.93 -0.35 1.52 16
LS Contribution 378.39 15.07 5.70 5.70
Total: -1.00 -34.73 378.39 -11.49 -46.22
By element:
Atomic # 1 Polarization: 1.85 SS G_CDS: -6.70 Total: -4.85 kcal
Atomic # 6 Polarization: -3.84 SS G_CDS: -2.67 Total: -6.51 kcal
Atomic # 7 Polarization: -46.51 SS G_CDS: -1.30 Total: -47.81 kcal
Atomic # 8 Polarization: -8.20 SS G_CDS: -1.51 Total: -9.71 kcal
Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal
Total LS contribution 5.70 Total: 5.70 kcal
Total: -34.73 -11.49 -46.22 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000611175713.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 53.749 kcal
(2) G-P(sol) polarization free energy of solvation -34.731 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.018 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.492 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.222 kcal
(6) G-S(sol) free energy of system = (1) + (5) 7.526 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds