Wall clock time and date at job start Tue Mar 31 2020 18:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00106 * 2 1 4 4 H 1.48498 * 109.47539 * 270.00246 * 3 2 1 5 5 H 1.48505 * 109.47158 * 30.00161 * 3 2 1 6 6 H 1.48502 * 109.47289 * 149.99952 * 3 2 1 7 7 C 1.37881 * 119.99702 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00567 * 0.02562 * 7 2 1 9 9 C 1.50709 * 119.99396 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.46608 * 180.02562 * 9 7 2 11 11 C 1.53007 * 109.47198 * 180.02562 * 10 9 7 12 12 N 1.46495 * 109.47111 * 179.97438 * 11 10 9 13 13 C 1.34782 * 119.99600 * 180.02562 * 12 11 10 14 14 O 1.21592 * 119.99900 * 359.97438 * 13 12 11 15 15 N 1.34776 * 119.99914 * 180.02562 * 13 12 11 16 16 C 1.46496 * 120.00048 * 179.97438 * 15 13 12 17 17 C 1.52998 * 109.47229 * 180.02562 * 16 15 13 18 18 C 1.50700 * 109.47065 * 180.02562 * 17 16 15 19 19 C 1.38275 * 119.92941 * 270.22565 * 18 17 16 20 20 C 1.38122 * 120.07058 * 180.27615 * 19 18 17 21 21 C 1.38861 * 119.92666 * 359.49882 * 20 19 18 22 22 N 1.39954 * 120.06968 * 180.27430 * 21 20 19 23 23 C 1.34775 * 119.99961 * 144.90704 * 22 21 20 24 24 O 1.21505 * 120.00129 * 4.62287 * 23 22 21 25 25 O 1.34658 * 119.99866 * 184.61998 * 23 22 21 26 26 C 1.38872 * 119.86176 * 0.24691 * 21 20 19 27 27 C 1.38110 * 119.92673 * 0.02562 * 26 21 20 28 28 H 0.97000 * 120.00184 * 359.97438 * 1 2 3 29 29 H 1.08996 * 109.46926 * 60.00802 * 9 7 2 30 30 H 1.08997 * 109.47380 * 300.00081 * 9 7 2 31 31 H 1.09001 * 109.47300 * 60.00430 * 10 9 7 32 32 H 1.09002 * 109.47599 * 300.00307 * 10 9 7 33 33 H 1.09001 * 109.46745 * 59.99967 * 11 10 9 34 34 H 1.09002 * 109.46996 * 300.00553 * 11 10 9 35 35 H 0.96996 * 120.00538 * 0.02562 * 12 11 10 36 36 H 0.97000 * 119.99774 * 0.02562 * 15 13 12 37 37 H 1.09004 * 109.46788 * 60.00302 * 16 15 13 38 38 H 1.08997 * 109.47471 * 300.00396 * 16 15 13 39 39 H 1.08992 * 109.47408 * 60.00148 * 17 16 15 40 40 H 1.09007 * 109.46987 * 299.99926 * 17 16 15 41 41 H 1.08000 * 119.96865 * 0.03190 * 19 18 17 42 42 H 1.07993 * 120.03570 * 179.77257 * 20 19 18 43 43 H 0.97001 * 119.99679 * 324.91087 * 22 21 20 44 44 H 0.96703 * 116.99891 * 180.02562 * 25 23 22 45 45 H 1.07997 * 120.02979 * 180.02562 * 26 21 20 46 46 H 1.08008 * 119.95823 * 179.97438 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5116 -1.1940 -0.0011 10 6 4.0215 -2.6365 -0.0023 11 6 5.5516 -2.6366 -0.0022 12 7 6.0398 -4.0178 -0.0027 13 6 7.3650 -4.2641 -0.0023 14 8 8.1551 -3.3399 -0.0019 15 7 7.8142 -5.5348 -0.0032 16 6 9.2545 -5.8025 -0.0033 17 6 9.4924 -7.3138 -0.0051 18 6 10.9740 -7.5892 -0.0045 19 6 11.6539 -7.7090 -1.2026 20 6 13.0108 -7.9670 -1.2055 21 6 13.6941 -8.0957 -0.0035 22 7 15.0701 -8.3514 -0.0030 23 6 15.8546 -7.8161 0.9533 24 8 15.3573 -7.1812 1.8621 25 8 17.1895 -7.9848 0.9014 26 6 13.0093 -7.9696 1.1980 27 6 11.6515 -7.7172 1.1941 28 1 -0.4850 0.8400 0.0004 29 1 3.8752 -0.6805 0.8889 30 1 3.8746 -0.6800 -0.8911 31 1 3.6579 -3.1498 -0.8925 32 1 3.6585 -3.1511 0.8875 33 1 5.9148 -2.1235 0.8882 34 1 5.9150 -2.1220 -0.8917 35 1 5.4095 -4.7551 -0.0034 36 1 7.1839 -6.2720 -0.0047 37 1 9.7055 -5.3644 0.8872 38 1 9.7058 -5.3629 -0.8928 39 1 9.0415 -7.7515 -0.8957 40 1 9.0410 -7.7537 0.8843 41 1 11.1227 -7.6047 -2.1371 42 1 13.5406 -8.0641 -2.1416 43 1 15.4591 -8.9139 -0.6909 44 1 17.7107 -7.5826 1.6098 45 1 13.5381 -8.0688 2.1345 46 1 11.1183 -7.6194 2.1283 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739069083.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:03 Heat of formation + Delta-G solvation = -103.070712 kcal Electronic energy + Delta-G solvation = -26390.838482 eV Core-core repulsion = 22279.915267 eV Total energy + Delta-G solvation = -4110.923216 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.36636 -39.96056 -39.53007 -37.06652 -36.16757 -35.54464 -34.79372 -33.30191 -32.19437 -31.40160 -31.20380 -28.40711 -26.87069 -24.47035 -23.47449 -22.91285 -22.38854 -21.26183 -20.86017 -20.24131 -19.70666 -18.15848 -18.10786 -17.42363 -16.82952 -16.71647 -16.32230 -15.98222 -15.62572 -15.35765 -14.59016 -14.58182 -14.29588 -14.23631 -14.15379 -13.92942 -13.73102 -13.62357 -13.36628 -12.67503 -12.48632 -12.20742 -12.08801 -12.03331 -11.89045 -11.80143 -11.45884 -11.12655 -11.03972 -10.86764 -10.71049 -10.26356 -9.98517 -9.80280 -9.66047 -9.37108 -9.22289 -9.20894 -8.64428 -8.61084 -8.53752 -6.04857 -4.03419 0.72178 0.97767 1.68127 2.16689 2.78301 3.31879 3.33181 3.35041 3.40695 3.45615 3.90706 4.26296 4.37126 4.46318 4.52378 4.60286 4.72471 4.74369 4.95376 5.00816 5.13962 5.24361 5.29563 5.55692 5.56893 5.63932 5.72535 5.74196 5.78084 5.81829 5.86443 6.06434 6.06918 6.21642 6.40577 6.41323 6.49763 6.54533 6.65520 6.72252 6.85222 7.02120 7.25953 7.39244 7.69303 7.77570 8.12422 8.51788 8.72823 8.99018 9.57648 11.08405 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.029963 B = 0.001352 C = 0.001320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.270152 B =20704.265224 C =21213.325621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.067 3.933 3 Si 0.879 3.121 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.522 4.522 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.113 4.113 11 C 0.133 3.867 12 N -0.742 5.742 13 C 0.700 3.300 14 O -0.593 6.593 15 N -0.752 5.752 16 C 0.144 3.856 17 C -0.091 4.091 18 C -0.088 4.088 19 C -0.093 4.093 20 C -0.136 4.136 21 C 0.148 3.852 22 N -0.649 5.649 23 C 0.664 3.336 24 O -0.557 6.557 25 O -0.523 6.523 26 C -0.116 4.116 27 C -0.093 4.093 28 H 0.263 0.737 29 H 0.019 0.981 30 H 0.015 0.985 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.395 0.605 36 H 0.395 0.605 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.131 0.869 42 H 0.128 0.872 43 H 0.418 0.582 44 H 0.434 0.566 45 H 0.141 0.859 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.311 -24.627 -1.175 40.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.134 4.134 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.560 4.560 8 H 0.090 0.910 9 C -0.049 4.049 10 C -0.151 4.151 11 C 0.009 3.991 12 N -0.396 5.396 13 C 0.400 3.600 14 O -0.472 6.472 15 N -0.409 5.409 16 C 0.020 3.980 17 C -0.128 4.128 18 C -0.090 4.090 19 C -0.111 4.111 20 C -0.157 4.157 21 C 0.055 3.945 22 N -0.301 5.301 23 C 0.417 3.583 24 O -0.445 6.445 25 O -0.334 6.334 26 C -0.136 4.136 27 C -0.112 4.112 28 H 0.073 0.927 29 H 0.037 0.963 30 H 0.033 0.967 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.228 0.772 36 H 0.228 0.772 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.149 0.851 42 H 0.146 0.854 43 H 0.254 0.746 44 H 0.295 0.705 45 H 0.159 0.841 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 32.568 -23.463 -1.017 40.153 hybrid contribution 0.369 0.207 0.062 0.428 sum 32.937 -23.255 -0.954 40.331 Atomic orbital electron populations 1.69912 1.06325 1.26941 1.51086 1.25020 0.94733 0.99223 0.94452 0.86779 0.80438 0.83516 0.78595 1.20253 1.21384 1.18854 1.21106 0.89338 0.94499 1.51045 0.91019 1.19505 0.97217 0.91509 0.96708 1.21706 0.90718 1.00976 1.01673 1.21512 0.95649 0.80104 1.01819 1.45327 1.04785 1.10071 1.79451 1.16005 0.83008 0.83054 0.77982 1.90926 1.55124 1.43232 1.57875 1.45105 1.07893 1.06385 1.81536 1.21114 0.80122 0.94007 1.02768 1.20777 0.92357 0.95819 1.03883 1.19699 0.95322 1.00727 0.93230 1.20868 0.93341 0.98943 0.97987 1.20842 0.95095 1.03496 0.96231 1.17473 0.80394 1.02026 0.94562 1.41836 1.05545 1.52074 1.30681 1.17725 0.80670 0.78052 0.81876 1.91097 1.74445 1.43911 1.35067 1.84162 1.17701 1.75487 1.56044 1.21296 0.94081 1.00444 0.97766 1.21007 0.93595 0.98618 0.97945 0.92719 0.96260 0.96712 0.92163 0.92138 0.91990 0.91997 0.77169 0.77151 0.91492 0.91540 0.90068 0.90064 0.85145 0.85358 0.74570 0.70474 0.84141 0.85268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.85 13.96 55.43 0.77 -27.07 16 2 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 3 Si 0.88 21.89 27.47 -169.99 -4.67 17.22 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.26 -6.35 6.54 56.52 0.37 -5.98 16 7 C -0.52 -14.76 9.66 -34.43 -0.33 -15.09 16 8 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 9 C -0.01 -0.27 4.04 -27.88 -0.11 -0.38 16 10 C -0.11 -2.11 5.27 -26.73 -0.14 -2.25 16 11 C 0.13 2.25 5.67 -4.04 -0.02 2.23 16 12 N -0.74 -10.36 5.56 -65.22 -0.36 -10.72 16 13 C 0.70 10.44 8.57 -86.91 -0.74 9.70 16 14 O -0.59 -11.61 16.34 5.29 0.09 -11.52 16 15 N -0.75 -7.63 5.56 -65.23 -0.36 -7.99 16 16 C 0.14 1.34 5.66 -4.05 -0.02 1.32 16 17 C -0.09 -0.54 5.45 -27.88 -0.15 -0.69 16 18 C -0.09 -0.61 5.14 -104.59 -0.54 -1.15 16 19 C -0.09 -0.58 9.69 -39.61 -0.38 -0.97 16 20 C -0.14 -0.82 9.97 -39.39 -0.39 -1.22 16 21 C 0.15 1.08 6.30 -83.68 -0.53 0.55 16 22 N -0.65 -3.69 5.34 -14.27 -0.08 -3.77 16 23 C 0.66 4.78 8.97 54.05 0.48 5.27 16 24 O -0.56 -6.01 14.56 -19.27 -0.28 -6.29 16 25 O -0.52 -2.10 13.48 -40.37 -0.54 -2.64 16 26 C -0.12 -0.98 8.70 -39.39 -0.34 -1.32 16 27 C -0.09 -0.71 9.69 -39.61 -0.38 -1.09 16 28 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 29 H 0.02 0.46 7.20 -51.93 -0.37 0.08 16 30 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 31 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 32 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 34 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 35 H 0.39 4.30 8.49 -40.82 -0.35 3.95 16 36 H 0.40 2.71 8.49 -40.82 -0.35 2.37 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.08 0.38 8.09 -51.93 -0.42 -0.04 16 40 H 0.08 0.40 8.08 -51.93 -0.42 -0.02 16 41 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 42 H 0.13 0.48 8.06 -52.49 -0.42 0.06 16 43 H 0.42 1.13 8.93 -40.82 -0.36 0.76 16 44 H 0.43 -0.03 9.11 45.56 0.42 0.39 16 45 H 0.14 1.32 6.22 -52.49 -0.33 0.99 16 46 H 0.13 0.83 8.06 -52.48 -0.42 0.40 16 LS Contribution 392.77 15.07 5.92 5.92 Total: -1.00 -38.57 392.77 -9.19 -47.76 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -5.97 Total: 2.34 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: -3.71 Total: -3.24 kcal Atomic # 7 Polarization: -49.52 SS G_CDS: -0.03 Total: -49.55 kcal Atomic # 8 Polarization: -19.72 SS G_CDS: -0.74 Total: -20.46 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.67 Total: 17.22 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -38.57 -9.19 -47.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739069083.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.313 kcal (2) G-P(sol) polarization free energy of solvation -38.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds