Wall clock time and date at job start Tue Mar 31 2020 18:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00106 * 2 1 4 4 H 1.48498 * 109.47539 * 270.00246 * 3 2 1 5 5 H 1.48505 * 109.47158 * 30.00161 * 3 2 1 6 6 H 1.48502 * 109.47289 * 149.99952 * 3 2 1 7 7 C 1.37881 * 119.99702 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00567 * 0.02562 * 7 2 1 9 9 C 1.50709 * 119.99396 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.46608 * 180.02562 * 9 7 2 11 11 C 1.53007 * 109.47198 * 180.02562 * 10 9 7 12 12 N 1.46495 * 109.47111 * 179.97438 * 11 10 9 13 13 C 1.34782 * 119.99600 * 180.02562 * 12 11 10 14 14 O 1.21592 * 119.99900 * 359.97438 * 13 12 11 15 15 N 1.34776 * 119.99914 * 180.02562 * 13 12 11 16 16 C 1.46496 * 120.00048 * 179.97438 * 15 13 12 17 17 C 1.52998 * 109.47229 * 180.02562 * 16 15 13 18 18 C 1.50700 * 109.47065 * 180.02562 * 17 16 15 19 19 C 1.38275 * 119.92941 * 270.22565 * 18 17 16 20 20 C 1.38122 * 120.07058 * 180.27615 * 19 18 17 21 21 C 1.38861 * 119.92666 * 359.49882 * 20 19 18 22 22 N 1.39954 * 120.06968 * 180.27430 * 21 20 19 23 23 C 1.34775 * 119.99961 * 144.90704 * 22 21 20 24 24 O 1.21505 * 120.00129 * 4.62287 * 23 22 21 25 25 O 1.34658 * 119.99866 * 184.61998 * 23 22 21 26 26 C 1.38872 * 119.86176 * 0.24691 * 21 20 19 27 27 C 1.38110 * 119.92673 * 0.02562 * 26 21 20 28 28 H 0.97000 * 120.00184 * 359.97438 * 1 2 3 29 29 H 1.08996 * 109.46926 * 60.00802 * 9 7 2 30 30 H 1.08997 * 109.47380 * 300.00081 * 9 7 2 31 31 H 1.09001 * 109.47300 * 60.00430 * 10 9 7 32 32 H 1.09002 * 109.47599 * 300.00307 * 10 9 7 33 33 H 1.09001 * 109.46745 * 59.99967 * 11 10 9 34 34 H 1.09002 * 109.46996 * 300.00553 * 11 10 9 35 35 H 0.96996 * 120.00538 * 0.02562 * 12 11 10 36 36 H 0.97000 * 119.99774 * 0.02562 * 15 13 12 37 37 H 1.09004 * 109.46788 * 60.00302 * 16 15 13 38 38 H 1.08997 * 109.47471 * 300.00396 * 16 15 13 39 39 H 1.08992 * 109.47408 * 60.00148 * 17 16 15 40 40 H 1.09007 * 109.46987 * 299.99926 * 17 16 15 41 41 H 1.08000 * 119.96865 * 0.03190 * 19 18 17 42 42 H 1.07993 * 120.03570 * 179.77257 * 20 19 18 43 43 H 0.97001 * 119.99679 * 324.91087 * 22 21 20 44 44 H 0.96703 * 116.99891 * 180.02562 * 25 23 22 45 45 H 1.07997 * 120.02979 * 180.02562 * 26 21 20 46 46 H 1.08008 * 119.95823 * 179.97438 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5116 -1.1940 -0.0011 10 6 4.0215 -2.6365 -0.0023 11 6 5.5516 -2.6366 -0.0022 12 7 6.0398 -4.0178 -0.0027 13 6 7.3650 -4.2641 -0.0023 14 8 8.1551 -3.3399 -0.0019 15 7 7.8142 -5.5348 -0.0032 16 6 9.2545 -5.8025 -0.0033 17 6 9.4924 -7.3138 -0.0051 18 6 10.9740 -7.5892 -0.0045 19 6 11.6539 -7.7090 -1.2026 20 6 13.0108 -7.9670 -1.2055 21 6 13.6941 -8.0957 -0.0035 22 7 15.0701 -8.3514 -0.0030 23 6 15.8546 -7.8161 0.9533 24 8 15.3573 -7.1812 1.8621 25 8 17.1895 -7.9848 0.9014 26 6 13.0093 -7.9696 1.1980 27 6 11.6515 -7.7172 1.1941 28 1 -0.4850 0.8400 0.0004 29 1 3.8752 -0.6805 0.8889 30 1 3.8746 -0.6800 -0.8911 31 1 3.6579 -3.1498 -0.8925 32 1 3.6585 -3.1511 0.8875 33 1 5.9148 -2.1235 0.8882 34 1 5.9150 -2.1220 -0.8917 35 1 5.4095 -4.7551 -0.0034 36 1 7.1839 -6.2720 -0.0047 37 1 9.7055 -5.3644 0.8872 38 1 9.7058 -5.3629 -0.8928 39 1 9.0415 -7.7515 -0.8957 40 1 9.0410 -7.7537 0.8843 41 1 11.1227 -7.6047 -2.1371 42 1 13.5406 -8.0641 -2.1416 43 1 15.4591 -8.9139 -0.6909 44 1 17.7107 -7.5826 1.6098 45 1 13.5381 -8.0688 2.1345 46 1 11.1183 -7.6194 2.1283 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739069083.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:02 Heat of formation + Delta-G solvation = -133.936324 kcal Electronic energy + Delta-G solvation = -26392.176915 eV Core-core repulsion = 22279.915267 eV Total energy + Delta-G solvation = -4112.261649 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.88199 -41.01845 -40.12517 -37.60766 -37.11677 -36.56856 -35.69977 -35.12020 -33.44101 -32.49957 -31.90021 -29.41268 -28.26118 -25.30213 -24.36242 -23.90443 -23.13018 -22.24010 -21.90142 -21.60132 -20.18320 -19.29559 -18.85455 -18.64072 -17.89624 -17.39116 -17.24622 -16.95391 -16.44550 -16.25674 -16.10388 -15.67253 -15.41202 -15.17439 -14.78132 -14.76761 -14.69856 -14.65160 -14.29133 -13.96263 -13.77467 -13.61498 -13.03988 -12.74688 -12.71355 -12.67833 -12.59577 -12.42668 -12.01316 -11.91207 -11.76744 -11.72709 -11.56982 -11.31895 -11.27727 -11.24348 -10.74546 -10.36495 -9.88019 -9.72259 -9.12873 -8.28043 -6.31583 0.19561 0.46425 1.26401 1.37984 1.39846 1.51639 1.61987 1.77329 2.17493 2.37776 2.79236 3.08043 3.35684 3.54245 3.91478 3.98732 4.09079 4.10840 4.16182 4.21092 4.25171 4.47634 4.53852 4.54635 4.56896 4.67447 4.92150 4.92934 4.98650 5.06663 5.09317 5.14006 5.26723 5.32522 5.41004 5.44217 5.52657 5.56095 5.58798 5.66988 5.68161 5.73583 6.03363 6.07789 6.24637 6.29264 6.76418 7.15494 7.26932 7.33394 7.61496 8.88339 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.029963 B = 0.001352 C = 0.001320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.270152 B =20704.265224 C =21213.325621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.007 3.993 3 Si 0.945 3.055 4 H -0.267 1.267 5 H -0.285 1.285 6 H -0.249 1.249 7 C -0.530 4.530 8 H 0.039 0.961 9 C -0.013 4.013 10 C -0.098 4.098 11 C 0.146 3.854 12 N -0.732 5.732 13 C 0.696 3.304 14 O -0.643 6.643 15 N -0.730 5.730 16 C 0.146 3.854 17 C -0.077 4.077 18 C -0.096 4.096 19 C -0.095 4.095 20 C -0.134 4.134 21 C 0.137 3.863 22 N -0.638 5.638 23 C 0.663 3.337 24 O -0.599 6.599 25 O -0.512 6.512 26 C -0.137 4.137 27 C -0.103 4.103 28 H 0.266 0.734 29 H 0.020 0.980 30 H 0.020 0.980 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.052 0.948 34 H 0.054 0.946 35 H 0.412 0.588 36 H 0.415 0.585 37 H 0.047 0.953 38 H 0.055 0.945 39 H 0.103 0.897 40 H 0.094 0.906 41 H 0.151 0.849 42 H 0.154 0.846 43 H 0.432 0.568 44 H 0.450 0.550 45 H 0.123 0.877 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.817 -25.635 -2.341 42.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.190 4.190 3 Si 0.769 3.231 4 H -0.192 1.192 5 H -0.210 1.210 6 H -0.173 1.173 7 C -0.568 4.568 8 H 0.057 0.943 9 C -0.051 4.051 10 C -0.136 4.136 11 C 0.021 3.979 12 N -0.388 5.388 13 C 0.395 3.605 14 O -0.525 6.525 15 N -0.388 5.388 16 C 0.021 3.979 17 C -0.114 4.114 18 C -0.097 4.097 19 C -0.114 4.114 20 C -0.154 4.154 21 C 0.044 3.956 22 N -0.292 5.292 23 C 0.416 3.584 24 O -0.490 6.490 25 O -0.325 6.325 26 C -0.157 4.157 27 C -0.122 4.122 28 H 0.075 0.925 29 H 0.038 0.962 30 H 0.038 0.962 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.249 0.751 36 H 0.252 0.748 37 H 0.065 0.935 38 H 0.073 0.927 39 H 0.121 0.879 40 H 0.113 0.887 41 H 0.169 0.831 42 H 0.172 0.828 43 H 0.272 0.728 44 H 0.314 0.686 45 H 0.141 0.859 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 34.097 -24.570 -2.197 42.085 hybrid contribution -0.078 0.412 0.419 0.593 sum 34.019 -24.158 -1.778 41.762 Atomic orbital electron populations 1.70054 1.08188 1.28089 1.52777 1.25948 0.95544 1.03315 0.94225 0.85725 0.79518 0.78657 0.79179 1.19243 1.21038 1.17256 1.21475 0.91880 0.93299 1.50166 0.94276 1.19474 0.94083 0.94760 0.96793 1.21471 0.91875 0.98044 1.02254 1.21132 0.94064 0.81651 1.01027 1.45026 1.05031 1.09491 1.79214 1.16195 0.82659 0.83885 0.77727 1.90897 1.56317 1.45161 1.60098 1.44918 1.08781 1.05319 1.79742 1.21150 0.79111 0.96330 1.01291 1.20692 0.91951 0.93115 1.05644 1.19828 0.95851 1.00847 0.93195 1.21200 0.93602 0.98008 0.98564 1.21134 0.95209 1.02409 0.96660 1.17652 0.81057 1.02145 0.94728 1.41770 1.05047 1.51812 1.30616 1.17888 0.81435 0.77539 0.81493 1.91077 1.75356 1.45845 1.36759 1.84154 1.16214 1.75301 1.56786 1.21291 0.94678 1.01996 0.97775 1.21140 0.93465 0.98853 0.98746 0.92536 0.96176 0.96213 0.91534 0.91661 0.92991 0.92766 0.75149 0.74828 0.93462 0.92696 0.87877 0.88735 0.83089 0.82792 0.72837 0.68562 0.85900 0.84846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.41 13.96 21.45 0.30 -59.12 16 2 C 0.01 0.38 5.47 84.66 0.46 0.85 16 3 Si 0.95 44.66 27.47 68.60 1.88 46.54 16 4 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 5 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 6 H -0.25 -11.06 6.54 99.48 0.65 -10.41 16 7 C -0.53 -30.12 9.66 25.60 0.25 -29.87 16 8 H 0.04 2.40 7.99 -2.91 -0.02 2.38 16 9 C -0.01 -0.60 4.04 29.85 0.12 -0.48 16 10 C -0.10 -3.55 5.27 30.60 0.16 -3.38 16 11 C 0.15 4.74 5.67 86.38 0.49 5.23 16 12 N -0.73 -18.98 5.56 -478.52 -2.66 -21.64 16 13 C 0.70 19.71 8.57 179.05 1.53 21.25 16 14 O -0.64 -24.85 16.34 -4.00 -0.07 -24.92 16 15 N -0.73 -13.21 5.56 -478.54 -2.66 -15.87 16 16 C 0.15 2.49 5.66 86.38 0.49 2.98 16 17 C -0.08 -0.71 5.45 29.85 0.16 -0.55 16 18 C -0.10 -1.18 5.14 -19.85 -0.10 -1.28 16 19 C -0.10 -0.98 9.69 22.25 0.22 -0.77 16 20 C -0.13 -1.36 9.97 22.39 0.22 -1.13 16 21 C 0.14 1.92 6.30 38.14 0.24 2.16 16 22 N -0.64 -6.76 5.34 -429.45 -2.29 -9.06 16 23 C 0.66 9.43 8.97 129.79 1.16 10.60 16 24 O -0.60 -13.45 14.56 19.82 0.29 -13.16 16 25 O -0.51 -3.61 13.48 -55.67 -0.75 -4.36 16 26 C -0.14 -2.39 8.70 22.39 0.19 -2.20 16 27 C -0.10 -1.56 9.69 22.25 0.22 -1.34 16 28 H 0.27 15.54 8.31 -92.71 -0.77 14.76 16 29 H 0.02 0.92 7.20 -2.39 -0.02 0.90 16 30 H 0.02 0.88 7.57 -2.39 -0.02 0.87 16 31 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 32 H 0.06 2.28 8.14 -2.39 -0.02 2.27 16 33 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.41 7.85 8.49 -92.71 -0.79 7.06 16 36 H 0.41 4.33 8.49 -92.71 -0.79 3.55 16 37 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 38 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.10 0.56 8.09 -2.39 -0.02 0.54 16 40 H 0.09 0.67 8.08 -2.38 -0.02 0.65 16 41 H 0.15 0.90 8.06 -2.91 -0.02 0.88 16 42 H 0.15 0.69 8.06 -2.91 -0.02 0.66 16 43 H 0.43 1.69 8.93 -92.71 -0.83 0.86 16 44 H 0.45 -0.45 9.11 -74.06 -0.67 -1.12 16 45 H 0.12 2.53 6.22 -2.91 -0.02 2.51 16 46 H 0.13 1.73 8.06 -2.91 -0.02 1.71 16 Total: -1.00 -85.20 392.77 -2.22 -87.43 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -2.08 Total: 12.10 kcal Atomic # 6 Polarization: -3.77 SS G_CDS: 5.82 Total: 2.05 kcal Atomic # 7 Polarization: -98.36 SS G_CDS: -7.32 Total: -105.68 kcal Atomic # 8 Polarization: -41.91 SS G_CDS: -0.53 Total: -42.44 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 1.88 Total: 46.54 kcal Total: -85.20 -2.22 -87.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739069083.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.511 kcal (2) G-P(sol) polarization free energy of solvation -85.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds