Wall clock time and date at job start Tue Mar 31 2020 18:24:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31514 * 1
3 3 Si 1.86800 * 119.99931 * 2 1
4 4 H 1.48498 * 109.47118 * 269.99821 * 3 2 1
5 5 H 1.48499 * 109.47134 * 30.00341 * 3 2 1
6 6 H 1.48507 * 109.46904 * 150.00164 * 3 2 1
7 7 C 1.37876 * 119.99769 * 180.02562 * 2 1 3
8 8 H 1.07999 * 119.99840 * 180.02562 * 7 2 1
9 9 C 1.50696 * 120.00339 * 0.02562 * 7 2 1
10 10 N 1.46500 * 109.47324 * 179.97438 * 9 7 2
11 11 C 1.34779 * 120.00169 * 180.02562 * 10 9 7
12 12 O 1.21282 * 119.99922 * 359.97438 * 11 10 9
13 13 C 1.50699 * 120.00037 * 179.97438 * 11 10 9
14 14 N 1.46506 * 109.46928 * 179.97438 * 13 11 10
15 15 C 1.39045 * 119.99661 * 179.97438 * 14 13 11
16 16 C 1.39221 * 119.93484 * 359.72957 * 15 14 13
17 17 C 1.37611 * 120.07017 * 179.72246 * 16 15 14
18 18 C 1.39793 * 119.92886 * 0.57165 * 17 16 15
19 19 C 1.47513 * 120.06901 * 179.68157 * 18 17 16
20 20 O 1.21593 * 120.00074 * 180.02562 * 19 18 17
21 21 N 1.34777 * 120.00040 * 0.02562 * 19 18 17
22 22 C 1.46499 * 120.00097 * 179.97438 * 21 19 18
23 23 C 1.53004 * 109.47230 * 180.02562 * 22 21 19
24 24 C 1.52998 * 109.47030 * 180.02562 * 23 22 21
25 25 O 1.42905 * 109.46656 * 180.02562 * 24 23 22
26 26 C 1.39798 * 119.86454 * 359.70271 * 18 17 16
27 27 C 1.37618 * 119.92877 * 359.97438 * 26 18 17
28 28 H 0.97005 * 120.00032 * 359.97438 * 1 2 3
29 29 H 1.09004 * 109.47043 * 59.99933 * 9 7 2
30 30 H 1.09004 * 109.47476 * 300.00008 * 9 7 2
31 31 H 0.96996 * 119.99986 * 359.97438 * 10 9 7
32 32 H 1.09004 * 109.47103 * 59.99751 * 13 11 10
33 33 H 1.09000 * 109.47247 * 299.99628 * 13 11 10
34 34 H 0.96999 * 120.00080 * 0.02562 * 14 13 11
35 35 H 1.08002 * 119.96127 * 359.97438 * 16 15 14
36 36 H 1.07995 * 120.03441 * 180.27548 * 17 16 15
37 37 H 0.97000 * 120.00105 * 0.02562 * 21 19 18
38 38 H 1.09001 * 109.47532 * 300.00249 * 22 21 19
39 39 H 1.09005 * 109.46940 * 60.00314 * 22 21 19
40 40 H 1.09001 * 109.46970 * 300.00474 * 23 22 21
41 41 H 1.09005 * 109.47000 * 60.00232 * 23 22 21
42 42 H 1.08987 * 109.47589 * 299.99916 * 24 23 22
43 43 H 1.08999 * 109.46880 * 60.00659 * 24 23 22
44 44 H 0.96705 * 113.99958 * 180.02562 * 25 24 23
45 45 H 1.07994 * 120.03605 * 179.97438 * 26 18 17
46 46 H 1.07995 * 119.96388 * 179.97438 * 27 26 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 2.4966 2.0464 -1.4001
5 1 1.4466 2.6526 0.7001
6 1 3.5467 1.4401 0.7000
7 6 2.0045 -1.1941 -0.0005
8 1 3.0845 -1.1941 -0.0001
9 6 1.2510 -2.4991 -0.0017
10 7 2.2030 -3.6127 -0.0027
11 6 1.7538 -4.8834 -0.0044
12 8 0.5613 -5.1050 -0.0046
13 6 2.7330 -6.0288 -0.0060
14 7 2.0005 -7.2976 -0.0070
15 6 2.6957 -8.5017 -0.0091
16 6 4.0879 -8.5001 -0.0159
17 6 4.7789 -9.6902 -0.0122
18 6 4.0813 -10.9016 -0.0137
19 6 4.8189 -12.1791 -0.0168
20 8 4.2109 -13.2322 -0.0186
21 7 6.1667 -12.1792 -0.0178
22 6 6.8991 -13.4479 -0.0203
23 6 8.4034 -13.1684 -0.0203
24 6 9.1683 -14.4934 -0.0236
25 8 10.5733 -14.2322 -0.0229
26 6 2.6834 -10.9000 -0.0126
27 6 1.9982 -9.7065 -0.0096
28 1 -0.4850 0.8401 0.0004
29 1 0.6247 -2.5563 -0.8920
30 1 0.6240 -2.5576 0.8880
31 1 3.1566 -3.4355 -0.0029
32 1 3.3598 -5.9722 0.8841
33 1 3.3596 -5.9699 -0.8959
34 1 1.0305 -7.2976 -0.0069
35 1 4.6262 -7.5638 -0.0200
36 1 5.8588 -9.6882 -0.0130
37 1 6.6517 -11.3391 -0.0160
38 1 6.6364 -14.0210 0.8689
39 1 6.6352 -14.0180 -0.9111
40 1 8.6665 -12.5951 -0.9093
41 1 8.6670 -12.5984 0.8707
42 1 8.9054 -15.0670 0.8651
43 1 8.9047 -15.0628 -0.9148
44 1 11.1215 -15.0289 -0.0253
45 1 2.1417 -11.8343 -0.0142
46 1 0.9182 -9.7046 -0.0092
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000759776979.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:24:16
Heat of formation + Delta-G solvation = -107.964326 kcal
Electronic energy + Delta-G solvation = -26440.601220 eV
Core-core repulsion = 22329.465802 eV
Total energy + Delta-G solvation = -4111.135419 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 335.168 amu
Computer time = 0.69 seconds
Orbital eigenvalues (eV)
-40.40858 -39.46683 -38.59535 -37.67985 -35.56834 -35.36024 -34.34670 -32.51183
-32.28203 -31.04971 -30.21695 -28.12685 -26.53745 -25.52566 -23.24032 -22.99252
-22.27059 -21.89405 -20.48236 -19.94853 -18.45300 -18.01137 -17.70833 -16.75351
-16.52479 -16.40487 -15.94897 -15.49781 -15.48181 -15.17391 -15.07282 -14.99523
-14.39787 -14.11109 -13.88493 -13.84269 -13.58065 -13.55727 -13.45678 -12.79348
-12.58048 -12.54386 -12.39014 -12.07451 -11.90145 -11.78211 -11.76403 -11.13664
-11.07505 -10.96923 -10.55116 -10.42138 -10.31086 -10.12073 -9.52515 -9.42057
-9.39047 -9.18842 -8.86101 -8.10258 -7.60986 -6.26251 -4.34174 0.91262
1.28407 2.78019 2.79696 3.04473 3.10607 3.18241 3.25074 3.27019
3.71178 3.80979 3.92796 4.27263 4.36429 4.44261 4.56828 4.63715
4.75728 4.78799 4.95011 4.95658 5.08244 5.10274 5.15499 5.15887
5.25946 5.28976 5.32235 5.49053 5.52808 5.58360 5.80627 6.02787
6.07383 6.12308 6.28036 6.57156 7.03659 7.04109 7.15455 7.20141
7.22918 7.36652 7.51917 7.58303 7.84758 8.02260 8.39270 8.60511
8.84820 9.32671 10.83829
Molecular weight = 335.17amu
Principal moments of inertia in cm(-1)
A = 0.018252 B = 0.001510 C = 0.001397
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1533.690942 B =18543.111127 C =20040.446524
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.884 5.884
2 C 0.065 3.935
3 Si 0.905 3.095
4 H -0.278 1.278
5 H -0.284 1.284
6 H -0.272 1.272
7 C -0.547 4.547
8 H 0.064 0.936
9 C 0.249 3.751
10 N -0.704 5.704
11 C 0.492 3.508
12 O -0.552 6.552
13 C 0.098 3.902
14 N -0.719 5.719
15 C 0.256 3.744
16 C -0.214 4.214
17 C -0.031 4.031
18 C -0.214 4.214
19 C 0.569 3.431
20 O -0.549 6.549
21 N -0.733 5.733
22 C 0.124 3.876
23 C -0.134 4.134
24 C 0.079 3.921
25 O -0.575 6.575
26 C -0.004 4.004
27 C -0.208 4.208
28 H 0.267 0.733
29 H 0.029 0.971
30 H 0.029 0.971
31 H 0.394 0.606
32 H 0.090 0.910
33 H 0.090 0.910
34 H 0.415 0.585
35 H 0.129 0.871
36 H 0.121 0.879
37 H 0.400 0.600
38 H 0.069 0.931
39 H 0.069 0.931
40 H 0.078 0.922
41 H 0.078 0.922
42 H 0.050 0.950
43 H 0.050 0.950
44 H 0.383 0.617
45 H 0.133 0.867
46 H 0.129 0.871
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 17.608 -25.903 -0.041 31.321
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.521 5.521
2 C -0.139 4.139
3 Si 0.732 3.268
4 H -0.204 1.204
5 H -0.209 1.209
6 H -0.197 1.197
7 C -0.585 4.585
8 H 0.082 0.918
9 C 0.129 3.871
10 N -0.352 5.352
11 C 0.276 3.724
12 O -0.432 6.432
13 C -0.031 4.031
14 N -0.347 5.347
15 C 0.147 3.853
16 C -0.237 4.237
17 C -0.051 4.051
18 C -0.220 4.220
19 C 0.359 3.641
20 O -0.427 6.427
21 N -0.386 5.386
22 C 0.000 4.000
23 C -0.172 4.172
24 C 0.001 3.999
25 O -0.381 6.381
26 C -0.024 4.024
27 C -0.231 4.231
28 H 0.077 0.923
29 H 0.047 0.953
30 H 0.047 0.953
31 H 0.227 0.773
32 H 0.108 0.892
33 H 0.108 0.892
34 H 0.254 0.746
35 H 0.147 0.853
36 H 0.139 0.861
37 H 0.236 0.764
38 H 0.088 0.912
39 H 0.088 0.912
40 H 0.096 0.904
41 H 0.096 0.904
42 H 0.068 0.932
43 H 0.068 0.932
44 H 0.230 0.770
45 H 0.151 0.849
46 H 0.147 0.853
Dipole moment (debyes) X Y Z Total
from point charges 16.019 -25.817 -0.036 30.383
hybrid contribution 0.973 0.979 -0.009 1.380
sum 16.992 -24.839 -0.045 30.095
Atomic orbital electron populations
1.69968 1.06151 1.27483 1.48543 1.24952 0.94925 0.99533 0.94521
0.86391 0.79606 0.82496 0.78286 1.20399 1.20941 1.19704 1.21195
0.93306 0.90320 1.53715 0.91772 1.19178 0.88225 0.81774 0.97964
1.46419 1.11507 1.05821 1.71455 1.20295 0.89339 0.84687 0.78094
1.90669 1.16656 1.84512 1.51346 1.21226 0.94841 0.83569 1.03435
1.44526 1.09765 1.01668 1.78749 1.18063 0.91576 0.85901 0.89745
1.20582 0.92047 0.98726 1.12311 1.20926 0.98879 0.91290 0.93973
1.19457 0.94230 0.92079 1.16221 1.18233 0.81465 0.89194 0.75229
1.90756 1.68251 1.33183 1.50540 1.45836 1.06515 1.09329 1.76916
1.21137 0.89780 0.86377 1.02726 1.21699 0.93199 0.98150 1.04188
1.22003 0.81140 0.96463 1.00305 1.86460 1.17080 1.36807 1.97756
1.20911 0.92465 0.97829 0.91205 1.20587 1.00119 0.90546 1.11828
0.92326 0.95318 0.95297 0.77347 0.89174 0.89174 0.74580 0.85342
0.86073 0.76417 0.91247 0.91237 0.90364 0.90359 0.93186 0.93178
0.77017 0.84903 0.85318
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.88 -25.29 13.29 55.43 0.74 -24.55 16
2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16
3 Si 0.91 20.15 29.54 -169.99 -5.02 15.13 16
4 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16
5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16
6 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16
7 C -0.55 -14.17 9.28 -34.44 -0.32 -14.49 16
8 H 0.06 1.54 7.60 -52.49 -0.40 1.14 16
9 C 0.25 6.23 5.43 -5.20 -0.03 6.21 16
10 N -0.70 -13.34 5.55 -61.47 -0.34 -13.68 16
11 C 0.49 8.66 7.90 -10.99 -0.09 8.58 16
12 O -0.55 -11.98 15.67 5.56 0.09 -11.89 16
13 C 0.10 1.17 5.38 -5.19 -0.03 1.14 16
14 N -0.72 -8.87 5.68 -59.81 -0.34 -9.21 16
15 C 0.26 2.87 6.65 -83.86 -0.56 2.31 16
16 C -0.21 -2.06 9.28 -39.45 -0.37 -2.42 16
17 C -0.03 -0.27 9.53 -39.23 -0.37 -0.64 16
18 C -0.21 -2.27 5.88 -104.95 -0.62 -2.89 16
19 C 0.57 6.34 7.76 -12.48 -0.10 6.25 16
20 O -0.55 -7.99 16.34 5.28 0.09 -7.90 16
21 N -0.73 -5.64 5.50 -61.35 -0.34 -5.98 16
22 C 0.12 0.81 5.67 -4.04 -0.02 0.79 16
23 C -0.13 -0.68 5.70 -26.73 -0.15 -0.83 16
24 C 0.08 0.36 7.05 37.16 0.26 0.62 16
25 O -0.58 -3.26 13.66 -35.23 -0.48 -3.75 16
26 C 0.00 -0.05 9.58 -39.22 -0.38 -0.42 16
27 C -0.21 -2.27 9.87 -39.44 -0.39 -2.66 16
28 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16
29 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16
30 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16
31 H 0.39 6.16 8.32 -40.82 -0.34 5.82 16
32 H 0.09 0.90 7.95 -51.93 -0.41 0.49 16
33 H 0.09 0.90 7.92 -51.93 -0.41 0.49 16
34 H 0.42 5.63 7.44 -40.82 -0.30 5.32 16
35 H 0.13 1.02 6.70 -52.49 -0.35 0.67 16
36 H 0.12 0.67 6.39 -52.49 -0.34 0.34 16
37 H 0.40 2.13 6.49 -40.82 -0.26 1.86 16
38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16
39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16
40 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16
41 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16
42 H 0.05 0.18 8.14 -51.94 -0.42 -0.24 16
43 H 0.05 0.18 8.14 -51.93 -0.42 -0.24 16
44 H 0.38 0.48 9.12 45.56 0.42 0.89 16
45 H 0.13 1.44 7.64 -52.49 -0.40 1.04 16
46 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16
LS Contribution 394.00 15.07 5.94 5.94
Total: -1.00 -35.05 394.00 -8.67 -43.71
By element:
Atomic # 1 Polarization: 14.74 SS G_CDS: -5.74 Total: 9.00 kcal
Atomic # 6 Polarization: 6.43 SS G_CDS: -3.25 Total: 3.18 kcal
Atomic # 7 Polarization: -53.14 SS G_CDS: -0.28 Total: -53.42 kcal
Atomic # 8 Polarization: -23.23 SS G_CDS: -0.31 Total: -23.54 kcal
Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal
Total LS contribution 5.94 Total: 5.94 kcal
Total: -35.05 -8.67 -43.71 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000759776979.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -64.251 kcal
(2) G-P(sol) polarization free energy of solvation -35.048 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.299 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.666 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.714 kcal
(6) G-S(sol) free energy of system = (1) + (5) -107.964 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.69 seconds