Wall clock time and date at job start Tue Mar 31 2020 18:24:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31514 * 1
3 3 Si 1.86800 * 119.99931 * 2 1
4 4 H 1.48498 * 109.47118 * 269.99821 * 3 2 1
5 5 H 1.48499 * 109.47134 * 30.00341 * 3 2 1
6 6 H 1.48507 * 109.46904 * 150.00164 * 3 2 1
7 7 C 1.37876 * 119.99769 * 180.02562 * 2 1 3
8 8 H 1.07999 * 119.99840 * 180.02562 * 7 2 1
9 9 C 1.50696 * 120.00339 * 0.02562 * 7 2 1
10 10 N 1.46500 * 109.47324 * 179.97438 * 9 7 2
11 11 C 1.34779 * 120.00169 * 180.02562 * 10 9 7
12 12 O 1.21282 * 119.99922 * 359.97438 * 11 10 9
13 13 C 1.50699 * 120.00037 * 179.97438 * 11 10 9
14 14 N 1.46506 * 109.46928 * 179.97438 * 13 11 10
15 15 C 1.39045 * 119.99661 * 179.97438 * 14 13 11
16 16 C 1.39221 * 119.93484 * 359.72957 * 15 14 13
17 17 C 1.37611 * 120.07017 * 179.72246 * 16 15 14
18 18 C 1.39793 * 119.92886 * 0.57165 * 17 16 15
19 19 C 1.47513 * 120.06901 * 179.68157 * 18 17 16
20 20 O 1.21593 * 120.00074 * 180.02562 * 19 18 17
21 21 N 1.34777 * 120.00040 * 0.02562 * 19 18 17
22 22 C 1.46499 * 120.00097 * 179.97438 * 21 19 18
23 23 C 1.53004 * 109.47230 * 180.02562 * 22 21 19
24 24 C 1.52998 * 109.47030 * 180.02562 * 23 22 21
25 25 O 1.42905 * 109.46656 * 180.02562 * 24 23 22
26 26 C 1.39798 * 119.86454 * 359.70271 * 18 17 16
27 27 C 1.37618 * 119.92877 * 359.97438 * 26 18 17
28 28 H 0.97005 * 120.00032 * 359.97438 * 1 2 3
29 29 H 1.09004 * 109.47043 * 59.99933 * 9 7 2
30 30 H 1.09004 * 109.47476 * 300.00008 * 9 7 2
31 31 H 0.96996 * 119.99986 * 359.97438 * 10 9 7
32 32 H 1.09004 * 109.47103 * 59.99751 * 13 11 10
33 33 H 1.09000 * 109.47247 * 299.99628 * 13 11 10
34 34 H 0.96999 * 120.00080 * 0.02562 * 14 13 11
35 35 H 1.08002 * 119.96127 * 359.97438 * 16 15 14
36 36 H 1.07995 * 120.03441 * 180.27548 * 17 16 15
37 37 H 0.97000 * 120.00105 * 0.02562 * 21 19 18
38 38 H 1.09001 * 109.47532 * 300.00249 * 22 21 19
39 39 H 1.09005 * 109.46940 * 60.00314 * 22 21 19
40 40 H 1.09001 * 109.46970 * 300.00474 * 23 22 21
41 41 H 1.09005 * 109.47000 * 60.00232 * 23 22 21
42 42 H 1.08987 * 109.47589 * 299.99916 * 24 23 22
43 43 H 1.08999 * 109.46880 * 60.00659 * 24 23 22
44 44 H 0.96705 * 113.99958 * 180.02562 * 25 24 23
45 45 H 1.07994 * 120.03605 * 179.97438 * 26 18 17
46 46 H 1.07995 * 119.96388 * 179.97438 * 27 26 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 2.4966 2.0464 -1.4001
5 1 1.4466 2.6526 0.7001
6 1 3.5467 1.4401 0.7000
7 6 2.0045 -1.1941 -0.0005
8 1 3.0845 -1.1941 -0.0001
9 6 1.2510 -2.4991 -0.0017
10 7 2.2030 -3.6127 -0.0027
11 6 1.7538 -4.8834 -0.0044
12 8 0.5613 -5.1050 -0.0046
13 6 2.7330 -6.0288 -0.0060
14 7 2.0005 -7.2976 -0.0070
15 6 2.6957 -8.5017 -0.0091
16 6 4.0879 -8.5001 -0.0159
17 6 4.7789 -9.6902 -0.0122
18 6 4.0813 -10.9016 -0.0137
19 6 4.8189 -12.1791 -0.0168
20 8 4.2109 -13.2322 -0.0186
21 7 6.1667 -12.1792 -0.0178
22 6 6.8991 -13.4479 -0.0203
23 6 8.4034 -13.1684 -0.0203
24 6 9.1683 -14.4934 -0.0236
25 8 10.5733 -14.2322 -0.0229
26 6 2.6834 -10.9000 -0.0126
27 6 1.9982 -9.7065 -0.0096
28 1 -0.4850 0.8401 0.0004
29 1 0.6247 -2.5563 -0.8920
30 1 0.6240 -2.5576 0.8880
31 1 3.1566 -3.4355 -0.0029
32 1 3.3598 -5.9722 0.8841
33 1 3.3596 -5.9699 -0.8959
34 1 1.0305 -7.2976 -0.0069
35 1 4.6262 -7.5638 -0.0200
36 1 5.8588 -9.6882 -0.0130
37 1 6.6517 -11.3391 -0.0160
38 1 6.6364 -14.0210 0.8689
39 1 6.6352 -14.0180 -0.9111
40 1 8.6665 -12.5951 -0.9093
41 1 8.6670 -12.5984 0.8707
42 1 8.9054 -15.0670 0.8651
43 1 8.9047 -15.0628 -0.9148
44 1 11.1215 -15.0289 -0.0253
45 1 2.1417 -11.8343 -0.0142
46 1 0.9182 -9.7046 -0.0092
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000759776979.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:24:15
Heat of formation + Delta-G solvation = -137.571996 kcal
Electronic energy + Delta-G solvation = -26441.885105 eV
Core-core repulsion = 22329.465802 eV
Total energy + Delta-G solvation = -4112.419303 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 335.168 amu
Computer time = 0.69 seconds
Orbital eigenvalues (eV)
-41.25539 -40.73220 -39.58497 -38.09714 -36.49637 -36.20434 -35.97612 -34.39944
-32.92978 -31.77879 -31.18409 -29.62105 -27.76982 -26.22144 -24.63536 -24.00700
-23.11385 -22.59127 -21.50034 -21.19776 -19.41303 -18.96170 -18.29245 -18.16572
-17.44431 -17.09557 -16.99079 -16.81338 -16.74326 -16.54635 -15.84701 -15.83423
-15.61566 -14.99566 -14.94375 -14.63172 -14.52976 -14.36356 -14.21242 -14.13688
-13.90889 -13.89875 -13.37152 -13.20916 -12.93987 -12.91159 -12.71449 -12.36885
-12.23241 -12.12834 -11.88257 -11.49499 -11.17504 -11.01471 -10.93790 -10.87320
-10.81241 -10.13145 -9.95499 -9.89596 -8.46485 -8.29644 -6.46036 0.09819
0.51560 1.44740 1.46317 1.57477 1.62681 1.94888 2.02639 2.16198
2.38115 2.70459 3.01272 3.06211 3.37108 3.79557 3.85750 3.88032
3.97952 4.03522 4.15939 4.32014 4.33643 4.39857 4.42740 4.52600
4.53239 4.62596 4.66965 4.70702 5.04496 5.09876 5.11641 5.14148
5.22726 5.24382 5.35655 5.41604 5.44762 5.50788 5.63408 5.78717
5.83355 6.23386 6.56321 6.57806 6.65198 6.82689 6.89131 7.22440
7.25377 7.40113 8.82344
Molecular weight = 335.17amu
Principal moments of inertia in cm(-1)
A = 0.018252 B = 0.001510 C = 0.001397
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1533.690942 B =18543.111127 C =20040.446524
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.931 5.931
2 C 0.004 3.996
3 Si 0.983 3.017
4 H -0.272 1.272
5 H -0.287 1.287
6 H -0.254 1.254
7 C -0.556 4.556
8 H 0.088 0.912
9 C 0.265 3.735
10 N -0.699 5.699
11 C 0.490 3.510
12 O -0.599 6.599
13 C 0.114 3.886
14 N -0.730 5.730
15 C 0.244 3.756
16 C -0.212 4.212
17 C -0.020 4.020
18 C -0.224 4.224
19 C 0.565 3.435
20 O -0.592 6.592
21 N -0.717 5.717
22 C 0.125 3.875
23 C -0.125 4.125
24 C 0.076 3.924
25 O -0.596 6.596
26 C -0.018 4.018
27 C -0.217 4.217
28 H 0.268 0.732
29 H -0.011 1.011
30 H -0.011 1.011
31 H 0.413 0.587
32 H 0.123 0.877
33 H 0.123 0.877
34 H 0.406 0.594
35 H 0.155 0.845
36 H 0.158 0.842
37 H 0.414 0.586
38 H 0.064 0.936
39 H 0.064 0.936
40 H 0.079 0.921
41 H 0.080 0.920
42 H 0.058 0.942
43 H 0.058 0.942
44 H 0.400 0.600
45 H 0.125 0.875
46 H 0.129 0.871
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 21.619 -25.535 -0.035 33.457
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.570 5.570
2 C -0.195 4.195
3 Si 0.806 3.194
4 H -0.197 1.197
5 H -0.213 1.213
6 H -0.177 1.177
7 C -0.593 4.593
8 H 0.106 0.894
9 C 0.142 3.858
10 N -0.349 5.349
11 C 0.276 3.724
12 O -0.481 6.481
13 C -0.013 4.013
14 N -0.358 5.358
15 C 0.137 3.863
16 C -0.234 4.234
17 C -0.040 4.040
18 C -0.229 4.229
19 C 0.355 3.645
20 O -0.474 6.474
21 N -0.370 5.370
22 C 0.001 3.999
23 C -0.163 4.163
24 C -0.002 4.002
25 O -0.405 6.405
26 C -0.037 4.037
27 C -0.239 4.239
28 H 0.077 0.923
29 H 0.007 0.993
30 H 0.007 0.993
31 H 0.250 0.750
32 H 0.140 0.860
33 H 0.140 0.860
34 H 0.243 0.757
35 H 0.172 0.828
36 H 0.176 0.824
37 H 0.252 0.748
38 H 0.082 0.918
39 H 0.082 0.918
40 H 0.098 0.902
41 H 0.098 0.902
42 H 0.076 0.924
43 H 0.076 0.924
44 H 0.250 0.750
45 H 0.143 0.857
46 H 0.147 0.853
Dipole moment (debyes) X Y Z Total
from point charges 20.145 -25.483 -0.030 32.484
hybrid contribution -0.271 0.738 -0.012 0.787
sum 19.874 -24.744 -0.042 31.737
Atomic orbital electron populations
1.70133 1.08301 1.28541 1.50032 1.26039 0.95710 1.03883 0.93897
0.85180 0.78571 0.77084 0.78538 1.19716 1.21263 1.17731 1.21635
0.94475 0.90457 1.52781 0.89446 1.18576 0.88704 0.84245 0.94292
1.46076 1.11569 1.05175 1.72051 1.21296 0.89740 0.85354 0.75968
1.90654 1.19338 1.85214 1.52880 1.21238 0.93048 0.80650 1.06379
1.44550 1.09413 1.02104 1.79713 1.18211 0.92437 0.85211 0.90437
1.20902 0.91224 1.00103 1.11177 1.21254 1.00627 0.89982 0.92111
1.19585 0.94063 0.92793 1.16470 1.18398 0.82412 0.88787 0.74890
1.90734 1.69309 1.34553 1.52801 1.45741 1.05518 1.10540 1.75214
1.21171 0.90725 0.85776 1.02238 1.21601 0.91802 0.98611 1.04316
1.22047 0.80787 0.96236 1.01122 1.86401 1.17708 1.38579 1.97819
1.20941 0.93180 0.97608 0.92020 1.20650 1.00403 0.90748 1.12148
0.92315 0.99299 0.99271 0.75011 0.85974 0.85964 0.75676 0.82756
0.82418 0.74782 0.91784 0.91773 0.90184 0.90180 0.92417 0.92404
0.75023 0.85734 0.85277
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -54.68 13.29 21.45 0.28 -54.39 16
2 C 0.00 0.24 5.46 84.65 0.46 0.70 16
3 Si 0.98 40.69 29.54 68.60 2.03 42.72 16
4 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16
5 H -0.29 -11.92 7.11 99.48 0.71 -11.21 16
6 H -0.25 -9.67 7.11 99.48 0.71 -8.96 16
7 C -0.56 -28.61 9.28 25.60 0.24 -28.37 16
8 H 0.09 3.99 7.60 -2.91 -0.02 3.97 16
9 C 0.26 13.66 5.43 85.63 0.46 14.13 16
10 N -0.70 -26.02 5.55 -466.78 -2.59 -28.61 16
11 C 0.49 16.92 7.90 87.66 0.69 17.61 16
12 O -0.60 -26.75 15.67 -3.04 -0.05 -26.80 16
13 C 0.11 2.40 5.38 85.63 0.46 2.86 16
14 N -0.73 -16.89 5.68 -343.13 -1.95 -18.84 16
15 C 0.24 5.03 6.65 38.47 0.26 5.29 16
16 C -0.21 -3.28 9.28 22.36 0.21 -3.08 16
17 C -0.02 -0.29 9.53 22.50 0.21 -0.07 16
18 C -0.22 -4.43 5.88 -20.08 -0.12 -4.55 16
19 C 0.56 12.09 7.76 86.69 0.67 12.76 16
20 O -0.59 -17.47 16.34 -4.01 -0.07 -17.53 16
21 N -0.72 -9.65 5.50 -466.28 -2.57 -12.22 16
22 C 0.12 1.47 5.67 86.38 0.49 1.96 16
23 C -0.13 -1.01 5.70 30.59 0.17 -0.83 16
24 C 0.08 0.55 7.05 71.98 0.51 1.06 16
25 O -0.60 -5.68 13.66 -148.98 -2.04 -7.71 16
26 C -0.02 -0.39 9.58 22.50 0.22 -0.18 16
27 C -0.22 -4.70 9.87 22.36 0.22 -4.48 16
28 H 0.27 14.75 8.31 -92.70 -0.77 13.98 16
29 H -0.01 -0.64 8.14 -2.38 -0.02 -0.66 16
30 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16
31 H 0.41 11.94 8.32 -92.71 -0.77 11.17 16
32 H 0.12 1.88 7.95 -2.38 -0.02 1.86 16
33 H 0.12 1.87 7.92 -2.39 -0.02 1.86 16
34 H 0.41 11.04 7.44 -92.71 -0.69 10.35 16
35 H 0.15 1.58 6.70 -2.91 -0.02 1.56 16
36 H 0.16 0.97 6.39 -2.91 -0.02 0.95 16
37 H 0.41 3.08 6.49 -92.71 -0.60 2.47 16
38 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16
39 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16
40 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16
41 H 0.08 0.64 8.14 -2.38 -0.02 0.62 16
42 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16
43 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16
44 H 0.40 0.33 9.12 -74.05 -0.68 -0.34 16
45 H 0.12 2.88 7.64 -2.91 -0.02 2.86 16
46 H 0.13 2.65 8.06 -2.91 -0.02 2.62 16
Total: -1.00 -79.96 394.00 -3.47 -83.44
By element:
Atomic # 1 Polarization: 26.82 SS G_CDS: -1.69 Total: 25.14 kcal
Atomic # 6 Polarization: 9.66 SS G_CDS: 5.16 Total: 14.81 kcal
Atomic # 7 Polarization: -107.24 SS G_CDS: -6.82 Total: -114.06 kcal
Atomic # 8 Polarization: -49.89 SS G_CDS: -2.15 Total: -52.04 kcal
Atomic # 14 Polarization: 40.69 SS G_CDS: 2.03 Total: 42.72 kcal
Total: -79.96 -3.47 -83.44 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000759776979.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -54.137 kcal
(2) G-P(sol) polarization free energy of solvation -79.963 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.100 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.472 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.435 kcal
(6) G-S(sol) free energy of system = (1) + (5) -137.572 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.69 seconds