Wall clock time and date at job start Tue Mar 31 2020 18:25:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 120.00172 * 2 1 4 4 H 1.48497 * 109.47018 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46890 * 299.99860 * 3 2 1 6 6 H 1.48494 * 109.47182 * 60.00170 * 3 2 1 7 7 C 1.37884 * 119.99806 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99712 * 180.02562 * 7 2 1 9 9 C 1.50692 * 119.99754 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.47123 * 180.02562 * 9 7 2 11 11 C 1.46950 * 111.00372 * 170.00126 * 10 9 7 12 12 C 1.53054 * 109.36712 * 183.19031 * 11 10 9 13 13 N 1.46958 * 109.36428 * 301.60096 * 12 11 10 14 14 C 1.46896 * 111.00144 * 183.18693 * 13 12 11 15 15 C 1.52996 * 109.47214 * 169.99686 * 14 13 12 16 16 H 1.09004 * 109.47038 * 60.00402 * 15 14 13 17 17 O 1.42895 * 109.47547 * 300.00201 * 15 14 13 18 18 C 1.50697 * 109.47392 * 179.97438 * 15 14 13 19 19 C 1.38265 * 119.99888 * 85.00235 * 18 15 14 20 20 C 1.38207 * 120.00352 * 179.72456 * 19 18 15 21 21 C 1.38257 * 119.99924 * 359.95724 * 20 19 18 22 22 C 1.38214 * 120.00146 * 359.97438 * 21 20 19 23 23 N 1.48015 * 120.00430 * 180.02562 * 22 21 20 24 24 O 1.21807 * 119.99841 * 0.02562 * 23 22 21 25 25 O 1.21803 * 120.00334 * 179.97438 * 23 22 21 26 26 C 1.38215 * 120.00726 * 264.73191 * 18 15 14 27 27 C 1.46959 * 110.87968 * 59.31717 * 13 12 11 28 28 C 1.46958 * 111.00054 * 293.80453 * 10 9 7 29 29 H 0.97002 * 119.99720 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.47170 * 60.00834 * 9 7 2 31 31 H 1.08997 * 109.47706 * 300.00533 * 9 7 2 32 32 H 1.09006 * 109.48797 * 63.22643 * 11 10 9 33 33 H 1.08996 * 109.48972 * 303.16043 * 11 10 9 34 34 H 1.08999 * 109.48757 * 181.63740 * 12 11 10 35 35 H 1.08991 * 109.48905 * 61.56605 * 12 11 10 36 36 H 1.09004 * 109.46790 * 49.99936 * 14 13 12 37 37 H 1.08996 * 109.46915 * 290.00103 * 14 13 12 38 38 H 0.96699 * 113.99825 * 299.99801 * 17 15 14 39 39 H 1.08000 * 119.99314 * 359.70267 * 19 18 15 40 40 H 1.08001 * 120.00414 * 179.97438 * 20 19 18 41 41 H 1.08000 * 120.00113 * 180.02562 * 21 20 19 42 42 H 1.08001 * 119.99268 * 0.24980 * 26 18 15 43 43 H 1.08994 * 109.48712 * 60.64992 * 27 13 12 44 44 H 1.09005 * 109.48844 * 180.71344 * 27 13 12 45 45 H 1.08998 * 109.49104 * 296.77679 * 28 10 9 46 46 H 1.09002 * 109.49127 * 56.84309 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8906 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2055 -3.6158 -0.0005 11 6 1.5208 -4.8940 0.2377 12 6 2.5563 -6.0188 0.3093 13 7 3.3194 -6.0593 -0.9459 14 6 4.2740 -7.1759 -0.9459 15 6 4.8669 -7.3399 -2.3467 16 1 5.3810 -6.4225 -2.6334 17 8 3.8184 -7.6097 -3.2793 18 6 5.8466 -8.4850 -2.3466 19 6 5.3970 -9.7796 -2.5296 20 6 6.2961 -10.8292 -2.5352 21 6 7.6453 -10.5846 -2.3587 22 6 8.0951 -9.2903 -2.1771 23 7 9.5396 -9.0283 -1.9887 24 8 10.3321 -9.9533 -1.9941 25 8 9.9360 -7.8877 -1.8292 26 6 7.1954 -8.2406 -2.1691 27 6 4.0041 -4.7810 -1.1841 28 6 2.9686 -3.6563 -1.2558 29 1 -0.4850 0.8401 0.0004 30 1 0.6241 -2.5567 -0.8904 31 1 0.6246 -2.5571 0.8896 32 1 0.8253 -5.0915 -0.5781 33 1 0.9732 -4.8433 1.1787 34 1 2.0483 -6.9718 0.4570 35 1 3.2353 -5.8354 1.1419 36 1 3.7599 -8.0933 -0.6592 37 1 5.0737 -6.9701 -0.2346 38 1 3.3171 -8.4137 -3.0857 39 1 4.3430 -9.9706 -2.6678 40 1 5.9448 -11.8405 -2.6777 41 1 8.3480 -11.4047 -2.3634 42 1 7.5467 -7.2293 -2.0265 43 1 4.6996 -4.5836 -0.3684 44 1 4.5518 -4.8316 -2.1252 45 1 2.2896 -3.8396 -2.0885 46 1 3.4767 -2.7033 -1.4035 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000760942605.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:45 Heat of formation + Delta-G solvation = -33.142353 kcal Electronic energy + Delta-G solvation = -28497.412967 eV Core-core repulsion = 24389.522073 eV Total energy + Delta-G solvation = -4107.890894 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.30322 -41.12142 -40.07340 -38.16445 -37.73233 -36.28592 -34.53824 -33.19962 -32.90585 -31.88258 -30.59973 -28.62193 -27.69216 -26.49285 -24.75617 -24.14387 -23.68939 -23.12788 -22.22609 -20.65757 -20.13683 -19.79153 -18.65414 -18.50583 -18.08358 -17.46844 -17.14155 -16.91578 -16.40203 -16.12726 -15.89364 -15.84345 -15.41320 -15.21586 -14.92699 -14.80880 -14.54197 -14.18139 -13.94386 -13.46342 -13.28430 -13.14452 -13.09408 -12.83945 -12.76885 -12.71723 -12.43128 -12.38242 -12.36925 -12.30424 -12.27563 -12.11407 -11.80452 -11.56871 -11.22535 -11.10422 -10.64017 -10.60858 -10.22804 -9.31840 -9.03582 -8.22572 -6.32775 -1.29699 -0.13161 0.25389 0.33251 1.39843 1.40164 1.53922 2.21004 2.38734 2.74464 3.09612 3.20389 3.29298 3.43738 3.56998 3.73268 3.74260 3.84882 3.94375 3.97655 4.12100 4.17040 4.20712 4.37131 4.42025 4.46257 4.56836 4.61608 4.67103 4.69465 4.78157 4.86651 4.95322 4.98319 5.01939 5.04472 5.06143 5.20117 5.21310 5.27581 5.46062 5.62331 5.96927 6.03386 6.06680 6.32912 6.39435 6.62057 6.83357 6.85244 7.37068 8.88831 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.017380 B = 0.002222 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.628395 B =12600.408366 C =13713.496810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.001 3.999 3 Si 0.970 3.030 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.062 0.938 9 C 0.209 3.791 10 N -0.546 5.546 11 C 0.053 3.947 12 C 0.072 3.928 13 N -0.533 5.533 14 C 0.031 3.969 15 C 0.161 3.839 16 H 0.099 0.901 17 O -0.548 6.548 18 C -0.112 4.112 19 C -0.045 4.045 20 C -0.099 4.099 21 C -0.057 4.057 22 C -0.063 4.063 23 N 0.029 4.971 24 O -0.166 6.166 25 O -0.202 6.202 26 C -0.057 4.057 27 C 0.068 3.932 28 C 0.070 3.930 29 H 0.265 0.735 30 H -0.041 1.041 31 H 0.004 0.996 32 H 0.022 0.978 33 H 0.070 0.930 34 H 0.105 0.895 35 H 0.036 0.964 36 H 0.106 0.894 37 H 0.044 0.956 38 H 0.388 0.612 39 H 0.179 0.821 40 H 0.189 0.811 41 H 0.166 0.834 42 H 0.145 0.855 43 H 0.035 0.965 44 H 0.090 0.910 45 H 0.015 0.985 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.953 -27.778 -5.360 30.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.197 4.197 3 Si 0.794 3.206 4 H -0.188 1.188 5 H -0.204 1.204 6 H -0.203 1.203 7 C -0.561 4.561 8 H 0.080 0.920 9 C 0.083 3.917 10 N -0.271 5.271 11 C -0.076 4.076 12 C -0.056 4.056 13 N -0.258 5.258 14 C -0.097 4.097 15 C 0.101 3.899 16 H 0.117 0.883 17 O -0.356 6.356 18 C -0.114 4.114 19 C -0.063 4.063 20 C -0.117 4.117 21 C -0.076 4.076 22 C -0.146 4.146 23 N 0.543 4.457 24 O -0.384 6.384 25 O -0.409 6.409 26 C -0.077 4.077 27 C -0.061 4.061 28 C -0.058 4.058 29 H 0.074 0.926 30 H -0.023 1.023 31 H 0.022 0.978 32 H 0.040 0.960 33 H 0.089 0.911 34 H 0.123 0.877 35 H 0.054 0.946 36 H 0.124 0.876 37 H 0.062 0.938 38 H 0.238 0.762 39 H 0.196 0.804 40 H 0.206 0.794 41 H 0.183 0.817 42 H 0.163 0.837 43 H 0.054 0.946 44 H 0.108 0.892 45 H 0.033 0.967 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 10.339 -27.193 -5.700 29.645 hybrid contribution 0.461 1.132 0.460 1.306 sum 10.800 -26.061 -5.241 28.692 Atomic orbital electron populations 1.70094 1.07722 1.27868 1.51789 1.25933 0.95774 1.03245 0.94790 0.85325 0.78942 0.78528 0.77772 1.18758 1.20369 1.20307 1.21469 0.93531 0.91082 1.49996 0.92027 1.19341 0.90080 0.89028 0.93289 1.62222 1.27324 1.03221 1.34370 1.22177 0.95867 0.89540 0.99988 1.22097 0.95248 0.98361 0.89907 1.62072 1.26193 1.02977 1.34579 1.22848 0.95092 0.95501 0.96288 1.20631 0.85872 0.94461 0.88958 0.88283 1.86726 1.47528 1.49690 1.51641 1.20580 0.92600 0.97275 1.00921 1.21883 1.03098 0.90465 0.90877 1.21664 0.89916 1.02249 0.97879 1.21474 0.98857 0.93842 0.93426 1.21297 0.78433 0.98104 1.16791 1.44049 1.04644 1.00119 0.96863 1.94496 1.52599 1.37248 1.54042 1.94568 1.83818 1.08030 1.54526 1.20936 0.92523 0.99303 0.94892 1.22124 0.94704 0.88260 1.00975 1.21931 0.95718 0.98351 0.89821 0.92648 1.02313 0.97765 0.95977 0.91141 0.87664 0.94585 0.87582 0.93803 0.76170 0.80407 0.79363 0.81686 0.83707 0.94632 0.89217 0.96708 0.91741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.83 13.29 21.45 0.28 -56.54 16 2 C 0.00 0.03 5.46 84.66 0.46 0.49 16 3 Si 0.97 44.77 29.54 68.60 2.03 46.79 16 4 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 5 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 6 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 7 C -0.52 -30.08 8.47 25.60 0.22 -29.86 16 8 H 0.06 3.49 7.13 -2.91 -0.02 3.47 16 9 C 0.21 11.40 4.72 85.55 0.40 11.80 16 10 N -0.55 -24.01 4.70 -900.30 -4.23 -28.24 16 11 C 0.05 1.87 5.61 86.31 0.48 2.35 16 12 C 0.07 1.82 5.61 86.31 0.48 2.31 16 13 N -0.53 -12.79 4.58 -895.73 -4.10 -16.89 16 14 C 0.03 0.47 4.60 86.30 0.40 0.86 16 15 C 0.16 2.24 3.09 29.85 0.09 2.33 16 16 H 0.10 1.71 6.40 -2.38 -0.02 1.69 16 17 O -0.55 -8.19 13.00 -148.98 -1.94 -10.13 16 18 C -0.11 -1.19 5.01 -19.86 -0.10 -1.29 16 19 C -0.05 -0.20 9.33 22.27 0.21 0.01 16 20 C -0.10 -0.33 10.05 22.27 0.22 -0.10 16 21 C -0.06 -0.53 9.56 22.27 0.21 -0.32 16 22 C -0.06 -1.03 6.85 36.37 0.25 -0.79 16 23 N 0.03 0.68 4.45 -46.47 -0.21 0.47 16 24 O -0.17 -3.91 18.45 18.88 0.35 -3.56 16 25 O -0.20 -5.41 18.45 18.88 0.35 -5.06 16 26 C -0.06 -0.86 9.19 22.27 0.20 -0.66 16 27 C 0.07 1.97 5.41 86.31 0.47 2.44 16 28 C 0.07 2.79 5.43 86.31 0.47 3.26 16 29 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 30 H -0.04 -2.44 8.12 -2.39 -0.02 -2.46 16 31 H 0.00 0.25 8.03 -2.39 -0.02 0.23 16 32 H 0.02 0.82 8.14 -2.38 -0.02 0.80 16 33 H 0.07 2.46 8.07 -2.39 -0.02 2.44 16 34 H 0.11 1.97 8.07 -2.39 -0.02 1.95 16 35 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.11 1.05 8.03 -2.38 -0.02 1.03 16 37 H 0.04 0.71 8.12 -2.39 -0.02 0.69 16 38 H 0.39 2.31 7.40 -74.06 -0.55 1.77 16 39 H 0.18 -0.46 6.62 -2.91 -0.02 -0.48 16 40 H 0.19 -0.77 8.06 -2.91 -0.02 -0.79 16 41 H 0.17 1.12 7.61 -2.91 -0.02 1.10 16 42 H 0.15 2.37 7.61 -2.91 -0.02 2.34 16 43 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.09 2.29 6.34 -2.38 -0.02 2.28 16 45 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 46 H 0.06 2.79 6.79 -2.39 -0.02 2.77 16 Total: -1.00 -76.59 379.42 -2.54 -79.13 By element: Atomic # 1 Polarization: 0.74 SS G_CDS: 0.45 Total: 1.19 kcal Atomic # 6 Polarization: -11.64 SS G_CDS: 4.47 Total: -7.17 kcal Atomic # 7 Polarization: -92.95 SS G_CDS: -8.25 Total: -101.20 kcal Atomic # 8 Polarization: -17.51 SS G_CDS: -1.24 Total: -18.75 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.79 kcal Total: -76.59 -2.54 -79.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760942605.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.986 kcal (2) G-P(sol) polarization free energy of solvation -76.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds