Wall clock time and date at job start Tue Mar 31 2020 18:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99839 * 2 1 4 4 H 1.48504 * 109.47315 * 269.99802 * 3 2 1 5 5 H 1.48507 * 109.47265 * 29.99648 * 3 2 1 6 6 H 1.48497 * 109.47279 * 149.99559 * 3 2 1 7 7 C 1.37876 * 120.00115 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99899 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99920 * 180.02562 * 7 2 1 10 10 N 1.46897 * 109.46952 * 179.97438 * 9 7 2 11 11 C 1.46961 * 111.00145 * 170.00143 * 10 9 7 12 12 C 1.53040 * 109.36784 * 183.19086 * 11 10 9 13 13 N 1.46956 * 109.36779 * 301.59768 * 12 11 10 14 14 C 1.46897 * 111.00629 * 183.18806 * 13 12 11 15 15 C 1.53001 * 109.47163 * 75.84308 * 14 13 12 16 16 H 1.08998 * 109.46947 * 300.55448 * 15 14 13 17 17 O 1.42896 * 109.47060 * 60.54984 * 15 14 13 18 18 C 1.50698 * 109.47314 * 180.54914 * 15 14 13 19 19 C 1.38252 * 120.00121 * 280.24037 * 18 15 14 20 20 C 1.38220 * 119.99909 * 180.27087 * 19 18 15 21 21 C 1.38256 * 119.99788 * 359.74598 * 20 19 18 22 22 C 1.38215 * 120.00234 * 359.97438 * 21 20 19 23 23 N 1.48019 * 119.99995 * 179.97438 * 22 21 20 24 24 O 1.21802 * 119.99497 * 180.02562 * 23 22 21 25 25 O 1.21791 * 120.00054 * 0.02895 * 23 22 21 26 26 C 1.38222 * 119.99649 * 99.99672 * 18 15 14 27 27 C 1.46961 * 110.87610 * 59.31695 * 13 12 11 28 28 C 1.46956 * 111.00629 * 293.80099 * 10 9 7 29 29 H 0.96999 * 120.00174 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.46993 * 60.00384 * 9 7 2 31 31 H 1.08997 * 109.47395 * 300.00178 * 9 7 2 32 32 H 1.09001 * 109.48595 * 63.21938 * 11 10 9 33 33 H 1.09004 * 109.48567 * 303.16021 * 11 10 9 34 34 H 1.09004 * 109.49494 * 181.63108 * 12 11 10 35 35 H 1.09000 * 109.49247 * 61.56789 * 12 11 10 36 36 H 1.08998 * 109.46955 * 315.84584 * 14 13 12 37 37 H 1.09000 * 109.47261 * 195.84656 * 14 13 12 38 38 H 0.96700 * 114.00166 * 60.00131 * 17 15 14 39 39 H 1.08000 * 120.00241 * 359.97438 * 19 18 15 40 40 H 1.07995 * 119.99862 * 179.71875 * 20 19 18 41 41 H 1.07996 * 119.99855 * 179.97438 * 21 20 19 42 42 H 1.07996 * 120.00204 * 0.02562 * 26 18 15 43 43 H 1.09001 * 109.48595 * 60.65450 * 27 13 12 44 44 H 1.09004 * 109.48567 * 180.71367 * 27 13 12 45 45 H 1.09000 * 109.48797 * 296.78491 * 28 10 9 46 46 H 1.09004 * 109.48339 * 56.82001 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 7 4.0012 -2.5789 0.0022 11 6 5.4507 -2.6253 -0.2354 12 6 5.9071 -4.0844 -0.3059 13 7 5.5602 -4.7647 0.9496 14 6 6.0499 -6.1497 0.9507 15 6 7.5606 -6.1563 1.1930 16 1 8.0571 -5.5874 0.4069 17 8 7.8422 -5.5617 2.4615 18 6 8.0651 -7.5763 1.1807 19 6 7.9123 -8.3739 2.2996 20 6 8.3801 -9.6745 2.2902 21 6 8.9961 -10.1794 1.1601 22 6 9.1436 -9.3839 0.0396 23 7 9.8036 -9.9244 -1.1701 24 8 9.9340 -9.2230 -2.1574 25 8 10.2161 -11.0702 -1.1782 26 6 8.6761 -8.0828 0.0490 27 6 4.1107 -4.7184 1.1872 28 6 3.6543 -3.2593 1.2578 29 1 -0.4850 0.8400 -0.0004 30 1 3.8745 -0.6800 0.8912 31 1 3.8752 -0.6803 -0.8888 32 1 5.9692 -2.1211 0.5802 33 1 5.6810 -2.1263 -1.1767 34 1 6.9865 -4.1212 -0.4532 35 1 5.4091 -4.5813 -1.1385 36 1 5.8344 -6.6120 -0.0125 37 1 5.5525 -6.7103 1.7422 38 1 7.4313 -6.0170 3.2092 39 1 7.4318 -7.9792 3.1826 40 1 8.2648 -10.2961 3.1658 41 1 9.3619 -11.1955 1.1530 42 1 8.7922 -7.4609 -0.8262 43 1 3.5922 -5.2226 0.3717 44 1 3.8804 -5.2174 2.1286 45 1 4.1523 -2.7623 2.0903 46 1 2.5749 -3.2222 1.4052 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000760942617.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:49 Heat of formation + Delta-G solvation = -5.349549 kcal Electronic energy + Delta-G solvation = -28447.297253 eV Core-core repulsion = 24340.611545 eV Total energy + Delta-G solvation = -4106.685708 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.56442 -40.52761 -38.99243 -37.36158 -36.92446 -35.00819 -32.76017 -32.47518 -32.33461 -30.60943 -29.62920 -27.50224 -27.03767 -25.26504 -23.48108 -23.13124 -23.03885 -21.68775 -21.04017 -19.58856 -19.26480 -19.02425 -17.89545 -17.51365 -16.92453 -16.75629 -16.51605 -15.78362 -15.39662 -15.13729 -14.75015 -14.48439 -14.46100 -14.17923 -13.91812 -13.64171 -13.47504 -13.23109 -12.89467 -12.65313 -12.40101 -12.15233 -11.93745 -11.85057 -11.71963 -11.57564 -11.49525 -11.47398 -11.05982 -10.88453 -10.74837 -10.53020 -10.44699 -10.19896 -10.12273 -9.88531 -9.71502 -9.29683 -8.59734 -8.30010 -7.41011 -6.08331 -4.05897 -0.63272 0.29580 0.88275 0.97270 2.64922 3.26779 3.34354 3.36717 3.49058 3.80510 3.89567 4.08721 4.16560 4.24604 4.37761 4.39662 4.42302 4.66946 4.69232 4.79828 4.94989 5.10075 5.13599 5.22071 5.23978 5.30942 5.36395 5.41521 5.55290 5.59790 5.65847 5.73385 5.77324 5.89138 6.00307 6.04935 6.26346 6.43520 6.57116 6.79405 6.92871 6.99317 7.11151 7.24470 7.26335 7.56251 7.86559 8.00843 8.62220 8.98953 9.53490 11.04645 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.024667 B = 0.002054 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.851491 B =13628.610338 C =14055.801069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.068 3.932 3 Si 0.875 3.125 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.510 4.510 8 H 0.080 0.920 9 C 0.163 3.837 10 N -0.530 5.530 11 C 0.054 3.946 12 C 0.059 3.941 13 N -0.528 5.528 14 C 0.027 3.973 15 C 0.155 3.845 16 H 0.113 0.887 17 O -0.532 6.532 18 C -0.110 4.110 19 C -0.060 4.060 20 C -0.112 4.112 21 C -0.058 4.058 22 C -0.041 4.041 23 N 0.027 4.973 24 O -0.156 6.156 25 O -0.160 6.160 26 C -0.045 4.045 27 C 0.059 3.941 28 C 0.067 3.933 29 H 0.264 0.736 30 H -0.010 1.010 31 H 0.024 0.976 32 H 0.033 0.967 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.041 0.959 36 H 0.047 0.953 37 H 0.077 0.923 38 H 0.371 0.629 39 H 0.143 0.857 40 H 0.150 0.850 41 H 0.154 0.846 42 H 0.155 0.845 43 H 0.040 0.960 44 H 0.071 0.929 45 H 0.031 0.969 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.417 -20.438 6.466 28.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.134 4.134 3 Si 0.703 3.297 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.192 1.192 7 C -0.548 4.548 8 H 0.098 0.902 9 C 0.036 3.964 10 N -0.255 5.255 11 C -0.075 4.075 12 C -0.069 4.069 13 N -0.253 5.253 14 C -0.102 4.102 15 C 0.095 3.905 16 H 0.131 0.869 17 O -0.336 6.336 18 C -0.112 4.112 19 C -0.078 4.078 20 C -0.131 4.131 21 C -0.077 4.077 22 C -0.124 4.124 23 N 0.547 4.453 24 O -0.373 6.373 25 O -0.376 6.376 26 C -0.064 4.064 27 C -0.068 4.068 28 C -0.061 4.061 29 H 0.074 0.926 30 H 0.007 0.993 31 H 0.042 0.958 32 H 0.051 0.949 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.059 0.941 36 H 0.065 0.935 37 H 0.096 0.904 38 H 0.218 0.782 39 H 0.161 0.839 40 H 0.168 0.832 41 H 0.171 0.829 42 H 0.173 0.827 43 H 0.058 0.942 44 H 0.090 0.910 45 H 0.049 0.951 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 18.261 -19.618 6.675 27.620 hybrid contribution 0.226 0.307 -0.112 0.397 sum 18.486 -19.311 6.564 27.527 Atomic orbital electron populations 1.69891 1.06125 1.26878 1.51036 1.24904 0.94750 0.98903 0.94811 0.86858 0.80313 0.83961 0.78607 1.20144 1.21196 1.19245 1.21013 0.88705 0.94661 1.50413 0.90232 1.20151 0.97042 0.84021 0.95140 1.62111 1.10356 1.19229 1.33775 1.22096 0.90214 0.94599 1.00583 1.22213 0.99474 0.95375 0.89820 1.62073 1.14915 1.13165 1.35155 1.22763 0.94525 0.91337 1.01594 1.20830 0.94581 0.86826 0.88301 0.86893 1.86731 1.75584 1.56521 1.14784 1.20757 0.98813 0.98424 0.93173 1.21438 0.95008 0.93306 0.98050 1.21218 0.97988 0.95886 0.97974 1.21119 0.95372 1.00674 0.90507 1.21123 1.07519 0.96384 0.87393 1.43627 0.98794 1.00603 1.02250 1.94572 1.60850 1.57821 1.24037 1.94539 1.50777 1.02862 1.89427 1.20922 0.93248 0.92625 0.99622 1.22267 0.85940 0.98469 1.00159 1.22018 1.01804 0.91485 0.90831 0.92647 0.99267 0.95805 0.94885 0.90932 0.91158 0.94070 0.93521 0.90446 0.78199 0.83906 0.83231 0.82853 0.82723 0.94155 0.91041 0.95123 0.88936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.28 13.96 55.43 0.77 -26.51 16 2 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 3 Si 0.88 21.35 27.47 -169.99 -4.67 16.69 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.27 -6.33 6.54 56.52 0.37 -5.96 16 7 C -0.51 -14.26 9.03 -34.44 -0.31 -14.57 16 8 H 0.08 2.41 7.38 -52.48 -0.39 2.02 16 9 C 0.16 3.91 3.79 -4.98 -0.02 3.89 16 10 N -0.53 -10.85 4.70 -235.92 -1.11 -11.96 16 11 C 0.05 0.91 5.61 -3.77 -0.02 0.89 16 12 C 0.06 0.80 5.43 -3.77 -0.02 0.78 16 13 N -0.53 -6.63 4.52 -234.47 -1.06 -7.69 16 14 C 0.03 0.24 4.64 -3.83 -0.02 0.22 16 15 C 0.15 1.19 3.27 -27.88 -0.09 1.10 16 16 H 0.11 0.94 6.73 -51.93 -0.35 0.60 16 17 O -0.53 -4.62 13.07 -35.23 -0.46 -5.08 16 18 C -0.11 -0.70 4.97 -104.62 -0.52 -1.22 16 19 C -0.06 -0.26 9.32 -39.58 -0.37 -0.63 16 20 C -0.11 -0.44 10.05 -39.58 -0.40 -0.84 16 21 C -0.06 -0.34 9.56 -39.58 -0.38 -0.72 16 22 C -0.04 -0.35 6.85 -79.95 -0.55 -0.89 16 23 N 0.03 0.30 4.45 33.96 0.15 0.45 16 24 O -0.16 -1.88 18.45 -29.46 -0.54 -2.43 16 25 O -0.16 -1.83 18.45 -29.46 -0.54 -2.38 16 26 C -0.05 -0.34 9.18 -39.58 -0.36 -0.70 16 27 C 0.06 0.84 5.56 -3.77 -0.02 0.82 16 28 C 0.07 1.24 5.43 -3.77 -0.02 1.22 16 29 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 30 H -0.01 -0.25 7.18 -51.93 -0.37 -0.63 16 31 H 0.02 0.57 7.45 -51.93 -0.39 0.19 16 32 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 1.17 8.07 -51.93 -0.42 0.75 16 34 H 0.07 0.80 6.79 -51.93 -0.35 0.45 16 35 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.05 0.43 7.99 -51.93 -0.42 0.01 16 37 H 0.08 0.57 7.84 -51.93 -0.41 0.17 16 38 H 0.37 1.87 7.51 45.56 0.34 2.22 16 39 H 0.14 0.26 6.80 -52.49 -0.36 -0.10 16 40 H 0.15 0.18 8.06 -52.49 -0.42 -0.25 16 41 H 0.15 0.71 7.61 -52.49 -0.40 0.32 16 42 H 0.16 1.10 7.59 -52.49 -0.40 0.70 16 43 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.07 0.86 8.00 -51.93 -0.42 0.45 16 45 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.09 1.90 6.79 -51.93 -0.35 1.55 16 LS Contribution 376.62 15.07 5.68 5.68 Total: -1.00 -33.58 376.62 -10.93 -44.51 By element: Atomic # 1 Polarization: 3.49 SS G_CDS: -5.95 Total: -2.46 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: -3.20 Total: -8.81 kcal Atomic # 7 Polarization: -44.47 SS G_CDS: -1.24 Total: -45.71 kcal Atomic # 8 Polarization: -8.34 SS G_CDS: -1.55 Total: -9.88 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.67 Total: 16.69 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.58 -10.93 -44.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760942617.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.158 kcal (2) G-P(sol) polarization free energy of solvation -33.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds