Wall clock time and date at job start Tue Mar 31 2020 18:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99839 * 2 1 4 4 H 1.48504 * 109.47315 * 269.99802 * 3 2 1 5 5 H 1.48507 * 109.47265 * 29.99648 * 3 2 1 6 6 H 1.48497 * 109.47279 * 149.99559 * 3 2 1 7 7 C 1.37876 * 120.00115 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99899 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99920 * 180.02562 * 7 2 1 10 10 N 1.46897 * 109.46952 * 179.97438 * 9 7 2 11 11 C 1.46961 * 111.00145 * 170.00143 * 10 9 7 12 12 C 1.53040 * 109.36784 * 183.19086 * 11 10 9 13 13 N 1.46956 * 109.36779 * 301.59768 * 12 11 10 14 14 C 1.46897 * 111.00629 * 183.18806 * 13 12 11 15 15 C 1.53001 * 109.47163 * 75.84308 * 14 13 12 16 16 H 1.08998 * 109.46947 * 300.55448 * 15 14 13 17 17 O 1.42896 * 109.47060 * 60.54984 * 15 14 13 18 18 C 1.50698 * 109.47314 * 180.54914 * 15 14 13 19 19 C 1.38252 * 120.00121 * 280.24037 * 18 15 14 20 20 C 1.38220 * 119.99909 * 180.27087 * 19 18 15 21 21 C 1.38256 * 119.99788 * 359.74598 * 20 19 18 22 22 C 1.38215 * 120.00234 * 359.97438 * 21 20 19 23 23 N 1.48019 * 119.99995 * 179.97438 * 22 21 20 24 24 O 1.21802 * 119.99497 * 180.02562 * 23 22 21 25 25 O 1.21791 * 120.00054 * 0.02895 * 23 22 21 26 26 C 1.38222 * 119.99649 * 99.99672 * 18 15 14 27 27 C 1.46961 * 110.87610 * 59.31695 * 13 12 11 28 28 C 1.46956 * 111.00629 * 293.80099 * 10 9 7 29 29 H 0.96999 * 120.00174 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.46993 * 60.00384 * 9 7 2 31 31 H 1.08997 * 109.47395 * 300.00178 * 9 7 2 32 32 H 1.09001 * 109.48595 * 63.21938 * 11 10 9 33 33 H 1.09004 * 109.48567 * 303.16021 * 11 10 9 34 34 H 1.09004 * 109.49494 * 181.63108 * 12 11 10 35 35 H 1.09000 * 109.49247 * 61.56789 * 12 11 10 36 36 H 1.08998 * 109.46955 * 315.84584 * 14 13 12 37 37 H 1.09000 * 109.47261 * 195.84656 * 14 13 12 38 38 H 0.96700 * 114.00166 * 60.00131 * 17 15 14 39 39 H 1.08000 * 120.00241 * 359.97438 * 19 18 15 40 40 H 1.07995 * 119.99862 * 179.71875 * 20 19 18 41 41 H 1.07996 * 119.99855 * 179.97438 * 21 20 19 42 42 H 1.07996 * 120.00204 * 0.02562 * 26 18 15 43 43 H 1.09001 * 109.48595 * 60.65450 * 27 13 12 44 44 H 1.09004 * 109.48567 * 180.71367 * 27 13 12 45 45 H 1.09000 * 109.48797 * 296.78491 * 28 10 9 46 46 H 1.09004 * 109.48339 * 56.82001 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 7 4.0012 -2.5789 0.0022 11 6 5.4507 -2.6253 -0.2354 12 6 5.9071 -4.0844 -0.3059 13 7 5.5602 -4.7647 0.9496 14 6 6.0499 -6.1497 0.9507 15 6 7.5606 -6.1563 1.1930 16 1 8.0571 -5.5874 0.4069 17 8 7.8422 -5.5617 2.4615 18 6 8.0651 -7.5763 1.1807 19 6 7.9123 -8.3739 2.2996 20 6 8.3801 -9.6745 2.2902 21 6 8.9961 -10.1794 1.1601 22 6 9.1436 -9.3839 0.0396 23 7 9.8036 -9.9244 -1.1701 24 8 9.9340 -9.2230 -2.1574 25 8 10.2161 -11.0702 -1.1782 26 6 8.6761 -8.0828 0.0490 27 6 4.1107 -4.7184 1.1872 28 6 3.6543 -3.2593 1.2578 29 1 -0.4850 0.8400 -0.0004 30 1 3.8745 -0.6800 0.8912 31 1 3.8752 -0.6803 -0.8888 32 1 5.9692 -2.1211 0.5802 33 1 5.6810 -2.1263 -1.1767 34 1 6.9865 -4.1212 -0.4532 35 1 5.4091 -4.5813 -1.1385 36 1 5.8344 -6.6120 -0.0125 37 1 5.5525 -6.7103 1.7422 38 1 7.4313 -6.0170 3.2092 39 1 7.4318 -7.9792 3.1826 40 1 8.2648 -10.2961 3.1658 41 1 9.3619 -11.1955 1.1530 42 1 8.7922 -7.4609 -0.8262 43 1 3.5922 -5.2226 0.3717 44 1 3.8804 -5.2174 2.1286 45 1 4.1523 -2.7623 2.0903 46 1 2.5749 -3.2222 1.4052 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000760942617.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:48 Heat of formation + Delta-G solvation = -30.573602 kcal Electronic energy + Delta-G solvation = -28448.391050 eV Core-core repulsion = 24340.611545 eV Total energy + Delta-G solvation = -4107.779505 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.30396 -41.09788 -40.09205 -38.16237 -37.73329 -36.30444 -34.53226 -33.21860 -32.90271 -31.88055 -30.95045 -28.83099 -27.69326 -26.51941 -24.52771 -24.10759 -23.73974 -22.90670 -22.21652 -20.68854 -20.11245 -19.79206 -18.96392 -18.65426 -18.04630 -17.45011 -17.14419 -16.87444 -16.30935 -16.19425 -15.92384 -15.86117 -15.30353 -15.18856 -15.11645 -14.74789 -14.61092 -14.34422 -14.10113 -13.56054 -13.30369 -13.16325 -13.09904 -12.91969 -12.76578 -12.69811 -12.45318 -12.36774 -12.33231 -12.25751 -12.19710 -11.91702 -11.79994 -11.60849 -11.38865 -11.10824 -10.79218 -10.61029 -10.24468 -9.31856 -9.03740 -8.29785 -6.33080 -1.29461 -0.12963 0.25463 0.33270 1.34158 1.35120 1.45988 2.20881 2.33139 2.73442 3.03037 3.21263 3.22960 3.43740 3.58819 3.73129 3.76958 3.85040 3.93829 3.96853 4.13724 4.16007 4.19744 4.34661 4.42777 4.45655 4.57230 4.60980 4.64308 4.68940 4.76830 4.80716 4.89180 4.94475 4.96858 4.99220 5.05438 5.12146 5.17026 5.20632 5.45976 5.51653 5.91258 5.98753 6.10307 6.36485 6.39816 6.63466 6.72569 6.85525 7.30674 8.86523 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.024667 B = 0.002054 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.851491 B =13628.610338 C =14055.801069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.008 3.992 3 Si 0.947 3.053 4 H -0.265 1.265 5 H -0.281 1.281 6 H -0.254 1.254 7 C -0.515 4.515 8 H 0.039 0.961 9 C 0.172 3.828 10 N -0.546 5.546 11 C 0.052 3.948 12 C 0.065 3.935 13 N -0.532 5.532 14 C 0.028 3.972 15 C 0.166 3.834 16 H 0.103 0.897 17 O -0.549 6.549 18 C -0.113 4.113 19 C -0.047 4.047 20 C -0.100 4.100 21 C -0.058 4.058 22 C -0.064 4.064 23 N 0.030 4.970 24 O -0.197 6.197 25 O -0.170 6.170 26 C -0.055 4.055 27 C 0.071 3.929 28 C 0.069 3.931 29 H 0.267 0.733 30 H -0.015 1.015 31 H 0.027 0.973 32 H 0.030 0.970 33 H 0.076 0.924 34 H 0.096 0.904 35 H 0.035 0.965 36 H 0.046 0.954 37 H 0.100 0.900 38 H 0.387 0.613 39 H 0.177 0.823 40 H 0.187 0.813 41 H 0.164 0.836 42 H 0.149 0.851 43 H 0.030 0.970 44 H 0.100 0.900 45 H 0.025 0.975 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.174 -21.261 8.605 30.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.189 4.189 3 Si 0.770 3.230 4 H -0.190 1.190 5 H -0.206 1.206 6 H -0.178 1.178 7 C -0.553 4.553 8 H 0.057 0.943 9 C 0.045 3.955 10 N -0.271 5.271 11 C -0.076 4.076 12 C -0.063 4.063 13 N -0.256 5.256 14 C -0.100 4.100 15 C 0.106 3.894 16 H 0.120 0.880 17 O -0.356 6.356 18 C -0.115 4.115 19 C -0.065 4.065 20 C -0.119 4.119 21 C -0.077 4.077 22 C -0.147 4.147 23 N 0.544 4.456 24 O -0.406 6.406 25 O -0.387 6.387 26 C -0.074 4.074 27 C -0.057 4.057 28 C -0.060 4.060 29 H 0.076 0.924 30 H 0.003 0.997 31 H 0.045 0.955 32 H 0.048 0.952 33 H 0.095 0.905 34 H 0.114 0.886 35 H 0.053 0.947 36 H 0.064 0.936 37 H 0.119 0.881 38 H 0.237 0.763 39 H 0.195 0.805 40 H 0.205 0.795 41 H 0.182 0.818 42 H 0.166 0.834 43 H 0.048 0.952 44 H 0.118 0.882 45 H 0.043 0.957 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 20.046 -20.447 8.777 29.949 hybrid contribution -0.382 0.445 -0.647 0.873 sum 19.664 -20.002 8.130 29.204 Atomic orbital electron populations 1.70041 1.08026 1.28117 1.52525 1.25834 0.95622 1.03090 0.94393 0.85720 0.79253 0.78745 0.79238 1.19013 1.20631 1.17791 1.21224 0.90936 0.93247 1.49894 0.94289 1.19903 0.94332 0.86438 0.94801 1.62031 1.13043 1.17063 1.34968 1.22202 0.87582 0.97249 1.00548 1.22151 1.00829 0.93089 0.90216 1.62049 1.13428 1.15654 1.34482 1.22860 0.95501 0.89080 1.02517 1.20591 0.93406 0.87443 0.87977 0.87967 1.86711 1.76006 1.57342 1.15528 1.20613 0.99349 0.97960 0.93544 1.21892 0.93407 0.93068 0.98109 1.21655 0.96108 0.96007 0.98082 1.21462 0.95004 1.01002 0.90205 1.21309 1.09199 0.97285 0.86903 1.44035 0.98404 1.00309 1.02892 1.94557 1.62528 1.57999 1.25545 1.94500 1.51072 1.03379 1.89717 1.20967 0.93822 0.92454 1.00179 1.22102 0.87136 0.95097 1.01317 1.21961 0.99849 0.94344 0.89838 0.92401 0.99733 0.95513 0.95221 0.90527 0.88576 0.94672 0.93557 0.88141 0.76309 0.80525 0.79542 0.81803 0.83376 0.95152 0.88213 0.95656 0.92298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.98 13.96 21.45 0.30 -58.68 16 2 C 0.01 0.47 5.47 84.65 0.46 0.93 16 3 Si 0.95 44.18 27.47 68.60 1.88 46.06 16 4 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 5 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 6 H -0.25 -11.19 6.54 99.48 0.65 -10.54 16 7 C -0.51 -29.77 9.03 25.60 0.23 -29.54 16 8 H 0.04 2.50 7.38 -2.91 -0.02 2.48 16 9 C 0.17 8.35 3.79 85.56 0.32 8.67 16 10 N -0.55 -22.52 4.70 -900.31 -4.23 -26.75 16 11 C 0.05 1.71 5.61 86.30 0.48 2.20 16 12 C 0.07 1.64 5.43 86.31 0.47 2.11 16 13 N -0.53 -12.06 4.52 -895.74 -4.05 -16.11 16 14 C 0.03 0.41 4.64 86.30 0.40 0.81 16 15 C 0.17 2.06 3.27 29.85 0.10 2.16 16 16 H 0.10 1.49 6.73 -2.39 -0.02 1.48 16 17 O -0.55 -7.52 13.07 -148.98 -1.95 -9.47 16 18 C -0.11 -1.10 4.97 -19.87 -0.10 -1.20 16 19 C -0.05 -0.19 9.32 22.27 0.21 0.02 16 20 C -0.10 -0.33 10.05 22.27 0.22 -0.11 16 21 C -0.06 -0.53 9.56 22.27 0.21 -0.32 16 22 C -0.06 -1.00 6.85 36.37 0.25 -0.75 16 23 N 0.03 0.66 4.45 -46.46 -0.21 0.46 16 24 O -0.20 -5.05 18.45 18.88 0.35 -4.70 16 25 O -0.17 -3.93 18.45 18.90 0.35 -3.58 16 26 C -0.05 -0.76 9.18 22.27 0.20 -0.56 16 27 C 0.07 1.93 5.56 86.30 0.48 2.41 16 28 C 0.07 2.56 5.43 86.31 0.47 3.03 16 29 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 30 H -0.01 -0.73 7.18 -2.39 -0.02 -0.75 16 31 H 0.03 1.28 7.45 -2.39 -0.02 1.26 16 32 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.08 2.39 8.07 -2.38 -0.02 2.38 16 34 H 0.10 1.95 6.79 -2.39 -0.02 1.94 16 35 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.05 0.72 7.99 -2.39 -0.02 0.70 16 37 H 0.10 1.02 7.84 -2.39 -0.02 1.01 16 38 H 0.39 2.10 7.51 -74.06 -0.56 1.54 16 39 H 0.18 -0.47 6.80 -2.91 -0.02 -0.49 16 40 H 0.19 -0.71 8.06 -2.91 -0.02 -0.73 16 41 H 0.16 1.12 7.61 -2.91 -0.02 1.10 16 42 H 0.15 2.14 7.59 -2.91 -0.02 2.12 16 43 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.10 2.13 8.00 -2.38 -0.02 2.11 16 45 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 46 H 0.06 2.55 6.79 -2.38 -0.02 2.54 16 Total: -1.00 -76.88 376.62 -2.74 -79.62 By element: Atomic # 1 Polarization: 2.90 SS G_CDS: 0.39 Total: 3.30 kcal Atomic # 6 Polarization: -14.56 SS G_CDS: 4.42 Total: -10.14 kcal Atomic # 7 Polarization: -92.90 SS G_CDS: -8.19 Total: -101.08 kcal Atomic # 8 Polarization: -16.50 SS G_CDS: -1.25 Total: -17.75 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 1.88 Total: 46.06 kcal Total: -76.88 -2.74 -79.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760942617.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.045 kcal (2) G-P(sol) polarization free energy of solvation -76.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds