Wall clock time and date at job start Tue Mar 31 2020 18:34:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00044 * 2 1 4 4 H 1.48501 * 109.47024 * 270.00419 * 3 2 1 5 5 H 1.48499 * 109.47195 * 29.99910 * 3 2 1 6 6 H 1.48496 * 109.47238 * 150.00128 * 3 2 1 7 7 C 1.37878 * 119.99921 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99661 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00294 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47062 * 180.02562 * 9 7 2 11 11 O 1.42907 * 109.46995 * 180.02562 * 10 9 7 12 12 C 1.35982 * 117.00010 * 179.97438 * 11 10 9 13 13 C 1.38779 * 120.49768 * 0.02562 * 12 11 10 14 14 C 1.38797 * 118.44986 * 180.02562 * 13 12 11 15 15 C 1.38065 * 119.35341 * 359.97438 * 14 13 12 16 16 N 1.31967 * 120.95544 * 0.02562 * 15 14 13 17 17 C 1.32280 * 121.68619 * 359.69993 * 16 15 14 18 18 N 1.39583 * 119.72570 * 180.28666 * 17 16 15 19 19 C 1.34785 * 120.00043 * 0.29969 * 18 17 16 20 20 O 1.21583 * 119.99822 * 359.97438 * 19 18 17 21 21 N 1.34768 * 119.99956 * 179.97438 * 19 18 17 22 22 C 1.46500 * 120.00026 * 179.97438 * 21 19 18 23 23 H 1.08997 * 109.47384 * 33.61472 * 22 21 19 24 24 C 1.52998 * 109.47219 * 273.61537 * 22 21 19 25 25 O 1.42904 * 109.47043 * 295.00197 * 24 22 21 26 26 C 1.53001 * 109.47089 * 153.61833 * 22 21 19 27 27 C 1.53000 * 117.49472 * 252.80495 * 26 22 21 28 28 C 1.53003 * 117.49701 * 184.14782 * 26 22 21 29 29 H 0.96998 * 120.00369 * 0.02562 * 1 2 3 30 30 H 1.08993 * 109.47125 * 59.99814 * 9 7 2 31 31 H 1.09002 * 109.46797 * 300.00229 * 9 7 2 32 32 H 1.09002 * 109.47269 * 299.99656 * 10 9 7 33 33 H 1.08993 * 109.47534 * 59.99780 * 10 9 7 34 34 H 1.08005 * 120.77456 * 359.97438 * 13 12 11 35 35 H 1.08004 * 120.32088 * 180.02562 * 14 13 12 36 36 H 1.08003 * 119.51934 * 179.97438 * 15 14 13 37 37 H 0.96998 * 120.00329 * 180.28730 * 18 17 16 38 38 H 0.97008 * 120.00446 * 359.97438 * 21 19 18 39 39 H 1.09005 * 109.47014 * 54.99888 * 24 22 21 40 40 H 1.08998 * 109.47572 * 175.00058 * 24 22 21 41 41 H 0.96704 * 113.99593 * 179.97438 * 25 24 22 42 42 H 1.08997 * 115.55277 * 38.47361 * 26 22 21 43 43 H 1.09000 * 117.50474 * 0.02562 * 27 26 22 44 44 H 1.09011 * 117.49780 * 145.02348 * 27 26 22 45 45 H 1.09004 * 117.49758 * 214.97715 * 28 26 22 46 46 H 1.08995 * 117.50024 * 0.02562 * 28 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0018 11 8 1.5308 -4.8997 0.0012 12 6 2.2715 -6.0401 0.0017 13 6 3.6579 -5.9795 0.0032 14 6 4.3718 -7.1698 0.0031 15 6 3.6879 -8.3691 0.0020 16 7 2.3686 -8.3982 0.0005 17 6 1.6491 -7.2882 0.0060 18 7 0.2555 -7.3667 0.0103 19 6 -0.3517 -8.5700 0.0149 20 8 0.3145 -9.5870 0.0150 21 7 -1.6973 -8.6458 0.0196 22 6 -2.3573 -9.9537 0.0241 23 1 -1.7551 -10.6626 0.5922 24 6 -2.5107 -10.4525 -1.4141 25 8 -3.3947 -9.5853 -2.1273 26 6 -3.7386 -9.8256 0.6695 27 6 -3.9217 -10.4158 2.0691 28 6 -4.5519 -11.1078 0.8579 29 1 -0.4850 0.8400 -0.0004 30 1 0.6248 -2.5571 -0.8896 31 1 0.6240 -2.5567 0.8903 32 1 2.8727 -3.6047 -0.8877 33 1 2.8713 -3.6039 0.8922 34 1 4.1695 -5.0282 0.0037 35 1 5.4518 -7.1578 0.0047 36 1 4.2407 -9.2969 0.0015 37 1 -0.2760 -6.5553 0.0101 38 1 -2.2288 -7.8343 0.0200 39 1 -1.5361 -10.4591 -1.9023 40 1 -2.9202 -11.4626 -1.4067 41 1 -3.5384 -9.8415 -3.0487 42 1 -4.2854 -8.9130 0.4326 43 1 -3.0581 -10.8949 2.5304 44 1 -4.5895 -9.8917 2.7530 45 1 -5.6339 -11.0387 0.7453 46 1 -4.1027 -12.0426 0.5224 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000786150575.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:47 Heat of formation + Delta-G solvation = -45.995906 kcal Electronic energy + Delta-G solvation = -28303.565535 eV Core-core repulsion = 24195.117269 eV Total energy + Delta-G solvation = -4108.448266 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.90943 -39.80478 -38.31856 -37.68849 -36.35803 -34.76471 -34.09737 -33.46134 -31.57210 -30.62739 -29.49897 -28.41847 -25.40442 -24.48197 -23.40101 -22.71556 -22.56388 -21.18718 -20.60511 -20.45298 -18.65757 -18.01149 -17.64124 -17.40492 -16.50804 -16.15234 -15.94969 -15.81295 -15.29378 -15.11042 -14.79528 -14.60991 -14.54796 -14.10787 -13.91963 -13.82817 -13.57217 -13.10726 -12.80336 -12.47443 -12.39679 -11.98635 -11.90139 -11.82734 -11.34849 -11.05689 -10.98546 -10.78714 -10.71332 -10.67150 -10.41364 -10.33200 -10.17964 -10.02896 -9.76881 -9.40456 -9.22484 -9.05729 -9.01796 -8.51487 -7.59466 -6.17185 -4.22062 1.30677 1.49833 2.44374 3.22668 3.23073 3.29242 3.31527 3.50442 3.56558 3.94569 4.05864 4.11823 4.32907 4.34593 4.60465 4.68892 4.73952 4.94084 4.99353 5.10573 5.11004 5.19688 5.22889 5.27544 5.35790 5.37587 5.50903 5.53797 5.62793 5.82778 5.88062 5.92171 5.92452 6.09039 6.21977 6.40757 6.43173 6.56457 6.62933 6.89417 7.37261 7.40338 7.54015 7.65469 7.77624 7.89701 8.15364 8.29375 8.66490 8.83190 9.42818 10.94269 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011010 B = 0.002544 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2542.539439 B =11005.577691 C =12890.224134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.061 3.939 3 Si 0.899 3.101 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.528 4.528 8 H 0.058 0.942 9 C 0.027 3.973 10 C 0.066 3.934 11 O -0.316 6.316 12 C 0.065 3.935 13 C -0.147 4.147 14 C -0.164 4.164 15 C 0.076 3.924 16 N -0.442 5.442 17 C 0.348 3.652 18 N -0.660 5.660 19 C 0.698 3.302 20 O -0.541 6.541 21 N -0.732 5.732 22 C 0.201 3.799 23 H 0.102 0.898 24 C 0.065 3.935 25 O -0.565 6.565 26 C -0.153 4.153 27 C -0.180 4.180 28 C -0.168 4.168 29 H 0.264 0.736 30 H 0.028 0.972 31 H 0.028 0.972 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.145 0.855 35 H 0.133 0.867 36 H 0.156 0.844 37 H 0.421 0.579 38 H 0.400 0.600 39 H 0.053 0.947 40 H 0.052 0.948 41 H 0.376 0.624 42 H 0.113 0.887 43 H 0.096 0.904 44 H 0.096 0.904 45 H 0.097 0.903 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.071 -21.404 -0.518 21.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.141 4.141 3 Si 0.726 3.274 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.566 4.566 8 H 0.077 0.923 9 C -0.011 4.011 10 C -0.008 4.008 11 O -0.229 6.229 12 C 0.013 3.987 13 C -0.173 4.173 14 C -0.185 4.185 15 C -0.081 4.081 16 N -0.157 5.157 17 C 0.114 3.886 18 N -0.310 5.310 19 C 0.398 3.602 20 O -0.413 6.413 21 N -0.388 5.388 22 C 0.095 3.905 23 H 0.120 0.880 24 C -0.014 4.014 25 O -0.370 6.370 26 C -0.171 4.171 27 C -0.217 4.217 28 C -0.206 4.206 29 H 0.074 0.926 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.162 0.838 35 H 0.151 0.849 36 H 0.173 0.827 37 H 0.258 0.742 38 H 0.235 0.765 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.223 0.777 42 H 0.131 0.869 43 H 0.114 0.886 44 H 0.114 0.886 45 H 0.115 0.885 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -4.346 -22.713 0.072 23.125 hybrid contribution 0.641 2.414 -0.588 2.566 sum -3.704 -20.298 -0.516 20.640 Atomic orbital electron populations 1.69962 1.06101 1.27070 1.49552 1.24980 0.94912 0.99407 0.94816 0.86485 0.79751 0.82891 0.78260 1.20467 1.21019 1.19745 1.20950 0.93062 0.90142 1.52457 0.92341 1.19121 0.94138 0.88930 0.98866 1.23380 0.97225 0.80346 0.99802 1.86102 1.36219 1.12890 1.87692 1.19543 0.91118 0.86996 1.01070 1.21585 0.92160 1.00332 1.03256 1.21875 1.01138 0.92550 1.02952 1.22403 0.88822 0.97828 0.99024 1.67635 1.07691 1.26791 1.13541 1.17491 0.83900 0.86896 1.00335 1.42487 1.04023 1.08997 1.75474 1.15941 0.81992 0.83833 0.78427 1.91008 1.63133 1.32959 1.54218 1.45038 1.04430 1.09286 1.80063 1.20393 0.91135 0.84988 0.93997 0.88043 1.22646 0.93238 0.92577 0.92917 1.86480 1.67968 1.54809 1.27779 1.22300 0.96600 0.99047 0.99180 1.23106 1.03460 1.04066 0.91048 1.22901 0.99457 0.95844 1.02354 0.92648 0.95368 0.95366 0.92985 0.92963 0.83779 0.84864 0.82711 0.74197 0.76528 0.92913 0.92985 0.77715 0.86888 0.88587 0.88583 0.88503 0.88764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.66 13.29 55.43 0.74 -24.92 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.53 -14.16 9.11 -34.44 -0.31 -14.48 16 8 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 9 C 0.03 0.66 5.34 -27.89 -0.15 0.51 16 10 C 0.07 1.32 4.70 37.15 0.17 1.50 16 11 O -0.32 -5.92 9.39 -19.68 -0.18 -6.10 16 12 C 0.06 1.10 6.72 -38.92 -0.26 0.84 16 13 C -0.15 -2.18 9.14 -39.17 -0.36 -2.53 16 14 C -0.16 -2.08 10.10 -39.44 -0.40 -2.48 16 15 C 0.08 1.06 11.17 -17.56 -0.20 0.86 16 16 N -0.44 -7.59 7.87 -12.22 -0.10 -7.68 16 17 C 0.35 5.95 7.45 -154.43 -1.15 4.80 16 18 N -0.66 -10.15 5.40 -15.67 -0.08 -10.23 16 19 C 0.70 10.62 8.51 -86.92 -0.74 9.88 16 20 O -0.54 -9.83 14.23 5.29 0.08 -9.76 16 21 N -0.73 -8.53 5.01 -58.68 -0.29 -8.83 16 22 C 0.20 2.04 2.58 -67.93 -0.18 1.87 16 23 H 0.10 1.14 7.32 -51.93 -0.38 0.76 16 24 C 0.07 0.61 6.68 37.16 0.25 0.86 16 25 O -0.57 -5.17 13.10 -35.23 -0.46 -5.63 16 26 C -0.15 -1.30 4.81 -90.62 -0.44 -1.73 16 27 C -0.18 -1.39 10.18 -26.69 -0.27 -1.66 16 28 C -0.17 -1.18 9.87 -26.69 -0.26 -1.45 16 29 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 30 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.05 0.99 7.70 -51.93 -0.40 0.59 16 33 H 0.05 0.99 7.70 -51.93 -0.40 0.59 16 34 H 0.14 1.98 6.44 -52.48 -0.34 1.64 16 35 H 0.13 1.26 8.06 -52.48 -0.42 0.84 16 36 H 0.16 1.69 8.06 -52.48 -0.42 1.26 16 37 H 0.42 5.82 8.06 -40.82 -0.33 5.49 16 38 H 0.40 4.06 8.62 -40.82 -0.35 3.71 16 39 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.05 0.39 7.75 -51.93 -0.40 -0.02 16 41 H 0.38 2.01 9.12 45.56 0.42 2.42 16 42 H 0.11 1.00 8.12 -51.93 -0.42 0.58 16 43 H 0.10 0.76 8.07 -51.93 -0.42 0.34 16 44 H 0.10 0.68 8.14 -51.92 -0.42 0.26 16 45 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.09 0.60 7.93 -51.93 -0.41 0.19 16 LS Contribution 390.67 15.07 5.89 5.89 Total: -1.00 -33.66 390.67 -9.77 -43.43 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: -5.94 Total: 9.75 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: -4.39 Total: -1.64 kcal Atomic # 7 Polarization: -51.92 SS G_CDS: 0.26 Total: -51.66 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: -0.57 Total: -21.49 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.66 -9.77 -43.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786150575.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.569 kcal (2) G-P(sol) polarization free energy of solvation -33.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds