Wall clock time and date at job start Tue Mar 31 2020 18:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31420 * 1 3 3 Si 1.86799 * 119.99820 * 2 1 4 4 H 1.48500 * 109.46756 * 269.99985 * 3 2 1 5 5 H 1.48496 * 109.47426 * 30.00088 * 3 2 1 6 6 H 1.48507 * 109.47018 * 150.00273 * 3 2 1 7 7 C 1.38943 * 119.99817 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00398 * 359.97438 * 7 2 1 9 9 N 1.37102 * 119.99918 * 180.02562 * 7 2 1 10 10 C 1.34782 * 119.99963 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99753 * 359.97438 * 10 9 7 12 12 C 1.50699 * 119.99696 * 179.97438 * 10 9 7 13 13 N 1.46499 * 109.46700 * 179.97438 * 12 10 9 14 14 C 1.34784 * 119.99893 * 180.02562 * 13 12 10 15 15 O 1.21588 * 119.99858 * 359.97438 * 14 13 12 16 16 N 1.34773 * 119.99935 * 179.72905 * 14 13 12 17 17 C 1.46496 * 119.99973 * 180.02562 * 16 14 13 18 18 H 1.09003 * 109.47229 * 324.99619 * 17 16 14 19 19 C 1.52996 * 109.47520 * 84.99489 * 17 16 14 20 20 C 1.52996 * 109.47336 * 295.00295 * 19 17 16 21 21 O 1.42897 * 109.47324 * 179.97438 * 20 19 17 22 22 C 1.53001 * 109.47254 * 205.00097 * 17 16 14 23 23 C 1.50693 * 109.47640 * 64.99424 * 22 17 16 24 24 C 1.38233 * 120.00125 * 269.73363 * 23 22 17 25 25 C 1.38236 * 120.00149 * 179.76320 * 24 23 22 26 26 C 1.38241 * 119.99759 * 0.50522 * 25 24 23 27 27 C 1.38233 * 120.00084 * 359.74636 * 26 25 24 28 28 C 1.38235 * 120.00197 * 89.99998 * 23 22 17 29 29 H 0.96996 * 119.99893 * 359.97438 * 1 2 3 30 30 H 0.96997 * 119.99718 * 359.97438 * 9 7 2 31 31 H 1.08998 * 109.46743 * 60.00438 * 12 10 9 32 32 H 1.08994 * 109.47542 * 300.00297 * 12 10 9 33 33 H 0.97005 * 120.00261 * 0.02562 * 13 12 10 34 34 H 0.97004 * 120.00018 * 359.97438 * 16 14 13 35 35 H 1.09002 * 109.46740 * 55.00430 * 19 17 16 36 36 H 1.08997 * 109.47212 * 175.00020 * 19 17 16 37 37 H 1.09007 * 109.47003 * 300.00103 * 20 19 17 38 38 H 1.09007 * 109.47149 * 59.99737 * 20 19 17 39 39 H 0.96709 * 114.00063 * 180.02562 * 21 20 19 40 40 H 1.09000 * 109.47382 * 185.00045 * 22 17 16 41 41 H 1.09004 * 109.46936 * 304.99302 * 22 17 16 42 42 H 1.07994 * 120.00186 * 359.97438 * 24 23 22 43 43 H 1.07996 * 120.00530 * 180.22686 * 25 24 23 44 44 H 1.07999 * 119.99952 * 179.72505 * 26 25 24 45 45 H 1.07999 * 120.00062 * 179.97438 * 27 26 25 46 46 H 1.08005 * 119.99698 * 0.02562 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6527 0.7000 6 1 3.5458 1.4402 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 1.4689 -2.1387 -0.0005 9 7 3.3799 -1.2033 0.0000 10 6 4.0538 -2.3706 0.0000 11 8 3.4472 -3.4210 0.0000 12 6 5.5608 -2.3706 0.0000 13 7 6.0490 -3.7518 0.0006 14 6 7.3742 -3.9981 0.0012 15 8 8.1643 -3.0739 0.0008 16 7 7.8234 -5.2688 0.0073 17 6 9.2637 -5.5365 0.0086 18 1 9.7747 -4.7781 -0.5846 19 6 9.7882 -5.4991 1.4453 20 6 9.6392 -4.0834 2.0060 21 8 10.1285 -4.0486 3.3481 22 6 9.5262 -6.9179 -0.5944 23 6 9.1220 -6.9175 -2.0462 24 6 7.8335 -7.2667 -2.4050 25 6 7.4613 -7.2616 -3.7363 26 6 8.3807 -6.9173 -4.7097 27 6 9.6706 -6.5731 -4.3512 28 6 10.0412 -6.5732 -3.0195 29 1 -0.4850 0.8400 0.0004 30 1 3.8649 -0.3633 0.0004 31 1 5.9240 -1.8568 0.8900 32 1 5.9241 -1.8567 -0.8899 33 1 5.4187 -4.4891 0.0006 34 1 7.1930 -6.0060 0.0116 35 1 9.2163 -6.1951 2.0591 36 1 10.8399 -5.7852 1.4557 37 1 10.2111 -3.3874 1.3922 38 1 8.5874 -3.7973 1.9956 39 1 10.0646 -3.1796 3.7677 40 1 10.5870 -7.1545 -0.5127 41 1 8.9446 -7.6660 -0.0556 42 1 7.1167 -7.5403 -1.6450 43 1 6.4537 -7.5309 -4.0164 44 1 8.0912 -6.9176 -5.7501 45 1 10.3889 -6.3045 -5.1117 46 1 11.0492 -6.3049 -2.7395 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000807553505.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:44 Heat of formation + Delta-G solvation = -122.880981 kcal Electronic energy + Delta-G solvation = -28620.473979 eV Core-core repulsion = 24508.691726 eV Total energy + Delta-G solvation = -4111.782253 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.48679 -40.42341 -39.92274 -38.11579 -36.86283 -36.23387 -35.24291 -33.84509 -33.33951 -32.19030 -31.70449 -29.33491 -28.51110 -26.20528 -24.61367 -23.47831 -22.48271 -21.88853 -21.57195 -21.44194 -20.58717 -19.48774 -18.36686 -17.74964 -17.64281 -17.35847 -16.90578 -16.71439 -16.28258 -16.09194 -15.96996 -15.59551 -15.43471 -15.24562 -14.92648 -14.84001 -14.43654 -14.32627 -14.22912 -13.98366 -13.83958 -13.66830 -13.22013 -13.02196 -12.96030 -12.77821 -12.44804 -12.33287 -12.00677 -11.97052 -11.81138 -11.70182 -11.58002 -11.26467 -10.84829 -10.64638 -10.34361 -10.29256 -9.85262 -9.74469 -9.54830 -8.45705 -6.07594 0.48196 0.54842 1.30755 1.33879 1.43437 1.63857 1.79455 2.18245 2.20292 2.80336 2.87694 3.10781 3.28017 3.33583 3.85802 3.95249 3.99971 4.06798 4.15511 4.19420 4.30933 4.39780 4.40116 4.41459 4.45610 4.54756 4.65343 4.67990 4.81776 4.87481 4.96854 5.07465 5.19593 5.21495 5.23165 5.34081 5.49248 5.57173 5.61503 5.67929 5.76102 5.88398 5.98922 6.17435 6.49037 6.78364 6.82134 7.05351 7.28975 7.58442 7.78647 8.70841 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010856 B = 0.002838 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2578.614403 B = 9864.431539 C =11600.678389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.008 4.008 3 Si 0.958 3.042 4 H -0.257 1.257 5 H -0.274 1.274 6 H -0.232 1.232 7 C -0.331 4.331 8 H 0.063 0.937 9 N -0.578 5.578 10 C 0.446 3.554 11 O -0.614 6.614 12 C 0.141 3.859 13 N -0.729 5.729 14 C 0.707 3.293 15 O -0.620 6.620 16 N -0.727 5.727 17 C 0.179 3.821 18 H 0.076 0.924 19 C -0.125 4.125 20 C 0.083 3.917 21 O -0.595 6.595 22 C -0.079 4.079 23 C -0.087 4.087 24 C -0.124 4.124 25 C -0.135 4.135 26 C -0.139 4.139 27 C -0.131 4.131 28 C -0.127 4.127 29 H 0.281 0.719 30 H 0.392 0.608 31 H 0.100 0.900 32 H 0.099 0.901 33 H 0.408 0.592 34 H 0.406 0.594 35 H 0.075 0.925 36 H 0.094 0.906 37 H 0.040 0.960 38 H 0.031 0.969 39 H 0.392 0.608 40 H 0.112 0.888 41 H 0.096 0.904 42 H 0.130 0.870 43 H 0.126 0.874 44 H 0.130 0.870 45 H 0.135 0.865 46 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.924 -11.837 -2.965 27.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.208 4.208 3 Si 0.778 3.222 4 H -0.181 1.181 5 H -0.198 1.198 6 H -0.155 1.155 7 C -0.460 4.460 8 H 0.081 0.919 9 N -0.219 5.219 10 C 0.233 3.767 11 O -0.500 6.500 12 C 0.012 3.988 13 N -0.387 5.387 14 C 0.407 3.593 15 O -0.501 6.501 16 N -0.383 5.383 17 C 0.074 3.926 18 H 0.094 0.906 19 C -0.164 4.164 20 C 0.006 3.994 21 O -0.403 6.403 22 C -0.116 4.116 23 C -0.087 4.087 24 C -0.141 4.141 25 C -0.153 4.153 26 C -0.157 4.157 27 C -0.149 4.149 28 C -0.144 4.144 29 H 0.091 0.909 30 H 0.227 0.773 31 H 0.118 0.882 32 H 0.117 0.883 33 H 0.245 0.755 34 H 0.241 0.759 35 H 0.093 0.907 36 H 0.112 0.888 37 H 0.059 0.941 38 H 0.050 0.950 39 H 0.241 0.759 40 H 0.131 0.869 41 H 0.115 0.885 42 H 0.148 0.852 43 H 0.144 0.856 44 H 0.148 0.852 45 H 0.153 0.847 46 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 25.141 -12.214 -3.097 28.122 hybrid contribution -1.260 1.106 -0.079 1.679 sum 23.880 -11.108 -3.176 26.528 Atomic orbital electron populations 1.69783 1.08040 1.29442 1.49393 1.26058 0.96414 1.02573 0.95738 0.85453 0.79598 0.77065 0.80060 1.18124 1.19848 1.15549 1.19027 0.80990 0.95243 1.50708 0.91869 1.41923 1.06105 1.07438 1.66386 1.20542 0.90125 0.83834 0.82188 1.90523 1.70814 1.32312 1.56312 1.20640 0.89086 0.84361 1.04699 1.44742 1.05842 1.08562 1.79555 1.15869 0.81744 0.84203 0.77488 1.90878 1.55301 1.44265 1.59664 1.45105 1.08541 1.05285 1.79329 1.20751 0.79116 0.97724 0.95036 0.90603 1.21967 1.03194 0.95805 0.95430 1.22238 0.97241 0.97926 0.82018 1.86343 1.86886 1.38329 1.28781 1.20900 1.04725 0.95279 0.90704 1.19961 0.93854 0.99030 0.95883 1.21261 0.96190 1.00250 0.96449 1.21414 1.00073 1.00151 0.93699 1.21415 0.94115 0.99978 1.00152 1.21423 0.96708 0.99790 0.96937 1.21344 1.00323 0.99927 0.92851 0.90936 0.77261 0.88211 0.88305 0.75518 0.75852 0.90668 0.88784 0.94128 0.95031 0.75910 0.86941 0.88516 0.85178 0.85595 0.85222 0.84675 0.84456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.38 13.96 21.66 0.30 -54.08 16 2 C -0.01 -0.43 5.50 84.92 0.47 0.04 16 3 Si 0.96 37.96 27.74 68.60 1.90 39.86 16 4 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 5 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 6 H -0.23 -7.83 6.52 99.48 0.65 -7.18 16 7 C -0.33 -18.70 10.16 84.04 0.85 -17.85 16 8 H 0.06 4.22 7.39 -2.91 -0.02 4.20 16 9 N -0.58 -26.42 5.09 -306.97 -1.56 -27.98 16 10 C 0.45 19.22 7.85 87.66 0.69 19.90 16 11 O -0.61 -31.26 15.24 -3.07 -0.05 -31.31 16 12 C 0.14 4.55 6.15 85.63 0.53 5.08 16 13 N -0.73 -21.68 5.53 -482.30 -2.67 -24.35 16 14 C 0.71 19.46 7.14 179.05 1.28 20.74 16 15 O -0.62 -20.02 13.46 -3.99 -0.05 -20.08 16 16 N -0.73 -14.29 4.49 -457.82 -2.06 -16.34 16 17 C 0.18 2.92 2.24 44.99 0.10 3.02 16 18 H 0.08 1.56 7.58 -2.39 -0.02 1.54 16 19 C -0.13 -2.12 5.26 30.59 0.16 -1.96 16 20 C 0.08 1.90 5.64 71.98 0.41 2.31 16 21 O -0.60 -13.23 13.66 -148.98 -2.03 -15.27 16 22 C -0.08 -0.86 4.89 29.85 0.15 -0.72 16 23 C -0.09 -1.35 4.95 -19.87 -0.10 -1.45 16 24 C -0.12 -2.11 9.11 22.27 0.20 -1.90 16 25 C -0.14 -2.51 10.05 22.27 0.22 -2.29 16 26 C -0.14 -2.47 10.05 22.27 0.22 -2.24 16 27 C -0.13 -2.16 10.05 22.27 0.22 -1.93 16 28 C -0.13 -1.99 9.70 22.27 0.22 -1.77 16 29 H 0.28 15.07 8.31 -92.71 -0.77 14.30 16 30 H 0.39 15.02 5.76 -92.71 -0.53 14.49 16 31 H 0.10 2.94 8.14 -2.39 -0.02 2.92 16 32 H 0.10 2.95 8.14 -2.39 -0.02 2.93 16 33 H 0.41 12.23 7.45 -92.70 -0.69 11.54 16 34 H 0.41 6.46 7.87 -92.71 -0.73 5.73 16 35 H 0.07 1.24 8.14 -2.39 -0.02 1.23 16 36 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.04 1.00 7.84 -2.38 -0.02 0.98 16 38 H 0.03 0.86 5.64 -2.38 -0.01 0.85 16 39 H 0.39 5.93 9.12 -74.05 -0.68 5.26 16 40 H 0.11 0.81 8.09 -2.39 -0.02 0.79 16 41 H 0.10 0.80 8.08 -2.39 -0.02 0.78 16 42 H 0.13 1.80 7.60 -2.91 -0.02 1.78 16 43 H 0.13 2.09 8.06 -2.91 -0.02 2.07 16 44 H 0.13 1.89 8.06 -2.91 -0.02 1.86 16 45 H 0.14 1.68 8.06 -2.91 -0.02 1.66 16 46 H 0.14 1.59 8.06 -2.91 -0.02 1.57 16 Total: -1.00 -76.83 384.16 -2.24 -79.07 By element: Atomic # 1 Polarization: 53.13 SS G_CDS: -1.64 Total: 51.49 kcal Atomic # 6 Polarization: 13.36 SS G_CDS: 5.62 Total: 18.98 kcal Atomic # 7 Polarization: -116.77 SS G_CDS: -5.98 Total: -122.75 kcal Atomic # 8 Polarization: -64.52 SS G_CDS: -2.14 Total: -66.66 kcal Atomic # 14 Polarization: 37.96 SS G_CDS: 1.90 Total: 39.86 kcal Total: -76.83 -2.24 -79.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807553505.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.808 kcal (2) G-P(sol) polarization free energy of solvation -76.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds