Wall clock time and date at job start Tue Mar 31 2020 18:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99805 * 2 1 4 4 H 1.48497 * 109.46884 * 270.00070 * 3 2 1 5 5 H 1.48503 * 109.46956 * 30.00590 * 3 2 1 6 6 H 1.48506 * 109.46786 * 150.00293 * 3 2 1 7 7 C 1.37873 * 119.99933 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99739 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99940 * 359.97438 * 7 2 1 10 10 O 1.42899 * 109.46860 * 180.02562 * 9 7 2 11 11 C 1.42906 * 114.00101 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47159 * 179.97438 * 11 10 9 13 13 O 1.45199 * 109.47155 * 64.99988 * 12 11 10 14 14 C 1.34760 * 116.99723 * 179.97438 * 13 12 11 15 15 O 1.21521 * 120.00407 * 359.97438 * 14 13 12 16 16 C 1.47302 * 119.99731 * 180.02562 * 14 13 12 17 17 C 1.39831 * 121.00116 * 354.26406 * 16 14 13 18 18 N 1.32183 * 118.98867 * 179.97438 * 17 16 14 19 19 C 1.31970 * 121.20578 * 0.02562 * 18 17 16 20 20 C 1.50705 * 118.87700 * 179.97438 * 19 18 17 21 21 C 1.54265 * 110.03353 * 57.91345 * 20 19 18 22 22 C 1.54969 * 104.15831 * 217.13670 * 21 20 19 23 23 C 1.54890 * 102.77685 * 37.88459 * 22 21 20 24 24 C 1.53878 * 110.03347 * 300.69440 * 20 19 18 25 25 N 1.31665 * 122.24448 * 0.02562 * 19 18 17 26 26 C 1.32979 * 120.84717 * 359.67879 * 25 19 18 27 27 N 1.37848 * 120.64287 * 180.30863 * 26 25 19 28 28 H 0.97005 * 120.00290 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.46864 * 60.00356 * 9 7 2 30 30 H 1.08996 * 109.47421 * 299.99845 * 9 7 2 31 31 H 1.09005 * 109.47111 * 59.99686 * 11 10 9 32 32 H 1.08998 * 109.46835 * 300.00447 * 11 10 9 33 33 H 1.08994 * 109.47375 * 304.99732 * 12 11 10 34 34 H 1.09001 * 109.46960 * 184.99925 * 12 11 10 35 35 H 1.08001 * 120.49806 * 0.02562 * 17 16 14 36 36 H 1.09003 * 110.01304 * 179.30621 * 20 19 18 37 37 H 1.09005 * 110.48259 * 335.78059 * 21 20 19 38 38 H 1.08992 * 110.48707 * 98.42253 * 21 20 19 39 39 H 1.08997 * 110.71934 * 279.57170 * 22 21 20 40 40 H 1.09002 * 110.76170 * 156.21835 * 22 21 20 41 41 H 1.09001 * 110.48175 * 203.40339 * 23 22 21 42 42 H 1.09000 * 110.59874 * 80.82044 * 23 22 21 43 43 H 1.08998 * 110.03139 * 238.57376 * 24 20 19 44 44 H 1.09001 * 110.03168 * 359.94847 * 24 20 19 45 45 H 0.97007 * 119.99807 * 185.66948 * 27 26 25 46 46 H 0.96991 * 120.00203 * 5.66386 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6526 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 8 2.1796 -3.5852 -0.0005 11 6 1.5650 -4.8754 -0.0011 12 6 2.6480 -5.9561 -0.0017 13 8 3.3994 -5.8891 1.2390 14 6 4.3974 -6.7804 1.3987 15 8 4.6330 -7.5918 0.5252 16 6 5.2020 -6.7719 2.6325 17 6 5.0283 -5.7762 3.5987 18 7 5.7714 -5.8072 4.6914 19 6 6.6681 -6.7567 4.8817 20 6 7.4873 -6.7411 6.1466 21 6 6.5592 -6.7884 7.3779 22 6 7.2542 -5.8670 8.4121 23 6 7.8088 -4.7202 7.5309 24 6 8.2818 -5.4269 6.2439 25 7 6.8720 -7.7165 4.0038 26 6 6.1677 -7.7710 2.8772 27 7 6.3803 -8.7814 1.9639 28 1 -0.4851 0.8401 0.0004 29 1 0.6240 -2.5566 -0.8903 30 1 0.6247 -2.5571 0.8896 31 1 0.9451 -4.9822 -0.8914 32 1 0.9446 -4.9827 0.8886 33 1 3.3215 -5.7952 -0.8435 34 1 2.1820 -6.9374 -0.0917 35 1 4.2975 -4.9941 3.4546 36 1 8.1691 -7.5915 6.1600 37 1 5.5714 -6.4022 7.1261 38 1 6.4856 -7.8061 7.7612 39 1 8.0648 -6.3943 8.9150 40 1 6.5334 -5.4847 9.1349 41 1 8.6463 -4.2293 8.0265 42 1 7.0248 -3.9979 7.3034 43 1 9.3491 -5.6395 6.3054 44 1 8.0756 -4.8008 5.3758 45 1 5.9213 -8.7673 1.1094 46 1 6.9888 -9.5064 2.1756 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815235300.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:55 Heat of formation + Delta-G solvation = -98.634368 kcal Electronic energy + Delta-G solvation = -28165.643680 eV Core-core repulsion = 24054.912838 eV Total energy + Delta-G solvation = -4110.730841 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.53810 -40.13024 -38.21643 -37.19226 -36.34368 -35.40805 -33.38359 -32.78452 -31.29018 -30.17819 -28.99668 -28.92649 -26.95139 -24.80408 -24.02045 -22.69619 -22.30476 -21.44061 -20.87922 -20.28925 -18.73208 -17.74902 -17.59300 -17.02446 -16.62732 -16.39180 -16.12764 -15.56580 -15.48235 -15.30816 -15.01264 -14.64485 -14.37763 -14.16722 -13.83084 -13.55189 -13.44126 -13.02045 -12.80966 -12.28972 -12.11016 -11.98009 -11.62229 -11.50918 -11.48261 -11.31391 -11.28855 -10.98434 -10.92045 -10.86448 -10.79687 -10.73845 -10.49567 -10.36850 -10.13625 -10.06676 -9.42803 -9.15295 -8.90686 -8.73067 -8.24166 -6.13548 -4.15356 0.29850 1.17706 2.38917 2.57306 3.05011 3.29690 3.34843 3.40434 3.59943 3.68156 4.06621 4.30546 4.43040 4.44735 4.50538 4.60825 4.68724 4.72161 5.02952 5.14291 5.19498 5.23283 5.26709 5.31913 5.38138 5.39299 5.41260 5.47114 5.64233 5.70987 5.80292 5.85943 5.87346 5.96225 5.99738 6.08099 6.12026 6.18979 6.37504 6.55320 6.87632 7.02257 7.37031 7.41552 7.68896 7.76355 8.02843 8.10132 8.48952 8.97009 9.49648 10.97957 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.009484 B = 0.002705 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2951.698274 B =10347.353825 C =12667.267586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.057 3.943 3 Si 0.908 3.092 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.515 4.515 8 H 0.067 0.933 9 C 0.195 3.805 10 O -0.391 6.391 11 C 0.061 3.939 12 C 0.076 3.924 13 O -0.331 6.331 14 C 0.534 3.466 15 O -0.531 6.531 16 C -0.316 4.316 17 C 0.253 3.747 18 N -0.559 5.559 19 C 0.398 3.602 20 C -0.029 4.029 21 C -0.112 4.112 22 C -0.122 4.122 23 C -0.121 4.121 24 C -0.109 4.109 25 N -0.586 5.586 26 C 0.494 3.506 27 N -0.812 5.812 28 H 0.264 0.736 29 H 0.006 0.994 30 H 0.008 0.992 31 H 0.064 0.936 32 H 0.051 0.949 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.187 0.813 36 H 0.098 0.902 37 H 0.080 0.920 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.064 0.936 42 H 0.073 0.927 43 H 0.068 0.932 44 H 0.070 0.930 45 H 0.427 0.573 46 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.523 -18.131 12.350 25.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.735 3.265 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.195 1.195 7 C -0.553 4.553 8 H 0.085 0.915 9 C 0.121 3.879 10 O -0.311 6.311 11 C -0.017 4.017 12 C 0.003 3.997 13 O -0.246 6.246 14 C 0.380 3.620 15 O -0.423 6.423 16 C -0.329 4.329 17 C 0.087 3.913 18 N -0.277 5.277 19 C 0.130 3.870 20 C -0.049 4.049 21 C -0.151 4.151 22 C -0.159 4.159 23 C -0.158 4.158 24 C -0.148 4.148 25 N -0.311 5.311 26 C 0.245 3.755 27 N -0.363 5.363 28 H 0.074 0.926 29 H 0.024 0.976 30 H 0.026 0.974 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.204 0.796 36 H 0.116 0.884 37 H 0.099 0.901 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.083 0.917 42 H 0.092 0.908 43 H 0.087 0.913 44 H 0.089 0.911 45 H 0.270 0.730 46 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 14.079 -18.194 12.773 26.314 hybrid contribution -0.481 0.404 -1.433 1.564 sum 13.598 -17.790 11.340 25.100 Atomic orbital electron populations 1.69957 1.06111 1.27234 1.50483 1.24943 0.94980 0.99456 0.95071 0.86334 0.79728 0.82199 0.78238 1.20484 1.21030 1.19544 1.21039 0.94097 0.89266 1.50938 0.91503 1.20242 0.88722 0.83450 0.95533 1.87920 1.35332 1.12575 1.95238 1.22332 0.93166 0.85475 1.00724 1.23288 0.93614 0.99015 0.83824 1.86639 1.42839 1.53260 1.41867 1.20450 0.78326 0.77853 0.85330 1.90496 1.68854 1.39329 1.43613 1.20109 1.07247 1.05398 1.00132 1.23660 0.90696 0.92391 0.84554 1.68312 1.09678 1.26631 1.23071 1.23109 0.88182 0.83032 0.92669 1.20758 0.95545 1.00293 0.88338 1.22444 0.99317 1.00044 0.93275 1.22483 0.99736 0.96399 0.97288 1.22333 1.00783 0.97822 0.94906 1.22120 0.98777 0.94582 0.99281 1.67989 1.29872 1.29308 1.03955 1.18372 0.85008 0.85200 0.86899 1.43073 1.49670 1.23957 1.19560 0.92609 0.97618 0.97433 0.91790 0.93062 0.90245 0.90218 0.79602 0.88370 0.90135 0.91457 0.91533 0.91223 0.91699 0.90782 0.91331 0.91141 0.72967 0.76584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.61 13.29 55.43 0.74 -25.88 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.91 21.73 29.54 -169.99 -5.02 16.70 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.52 -15.03 9.43 -34.44 -0.32 -15.35 16 8 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16 9 C 0.19 5.23 5.69 36.01 0.20 5.43 16 10 O -0.39 -9.19 10.30 -38.80 -0.40 -9.59 16 11 C 0.06 1.06 6.33 37.16 0.24 1.29 16 12 C 0.08 1.14 5.85 37.16 0.22 1.35 16 13 O -0.33 -5.26 9.55 -43.44 -0.41 -5.67 16 14 C 0.53 7.85 7.89 34.42 0.27 8.12 16 15 O -0.53 -7.90 13.61 -19.28 -0.26 -8.16 16 16 C -0.32 -4.30 5.92 -104.54 -0.62 -4.92 16 17 C 0.25 3.33 10.89 -16.81 -0.18 3.15 16 18 N -0.56 -7.20 9.37 -10.44 -0.10 -7.29 16 19 C 0.40 4.76 6.17 -157.15 -0.97 3.79 16 20 C -0.03 -0.27 3.29 -90.65 -0.30 -0.56 16 21 C -0.11 -0.92 6.32 -25.03 -0.16 -1.08 16 22 C -0.12 -0.84 6.91 -24.69 -0.17 -1.01 16 23 C -0.12 -0.93 6.83 -25.08 -0.17 -1.11 16 24 C -0.11 -0.94 6.35 -25.62 -0.16 -1.10 16 25 N -0.59 -7.25 10.32 -9.74 -0.10 -7.35 16 26 C 0.49 6.23 7.83 -154.89 -1.21 5.02 16 27 N -0.81 -8.28 8.93 31.40 0.28 -8.00 16 28 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 29 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 30 H 0.01 0.22 8.14 -51.93 -0.42 -0.21 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 34 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.19 2.33 7.72 -52.49 -0.41 1.92 16 36 H 0.10 0.82 8.11 -51.93 -0.42 0.39 16 37 H 0.08 0.79 7.41 -51.93 -0.38 0.40 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.07 0.73 7.51 -51.93 -0.39 0.34 16 45 H 0.43 4.62 5.52 -40.82 -0.23 4.40 16 46 H 0.40 3.10 8.95 -40.82 -0.37 2.73 16 LS Contribution 386.42 15.07 5.82 5.82 Total: -1.00 -32.56 386.42 -9.70 -42.27 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -6.81 Total: 2.59 kcal Atomic # 6 Polarization: 7.99 SS G_CDS: -3.44 Total: 4.56 kcal Atomic # 7 Polarization: -49.34 SS G_CDS: 0.82 Total: -48.52 kcal Atomic # 8 Polarization: -22.34 SS G_CDS: -1.08 Total: -23.42 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.56 -9.70 -42.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815235300.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.367 kcal (2) G-P(sol) polarization free energy of solvation -32.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds