Wall clock time and date at job start Tue Mar 31 2020 18:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99805 * 2 1 4 4 H 1.48497 * 109.46884 * 270.00070 * 3 2 1 5 5 H 1.48503 * 109.46956 * 30.00590 * 3 2 1 6 6 H 1.48506 * 109.46786 * 150.00293 * 3 2 1 7 7 C 1.37873 * 119.99933 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99739 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99940 * 359.97438 * 7 2 1 10 10 O 1.42899 * 109.46860 * 180.02562 * 9 7 2 11 11 C 1.42906 * 114.00101 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47159 * 179.97438 * 11 10 9 13 13 O 1.45199 * 109.47155 * 64.99988 * 12 11 10 14 14 C 1.34760 * 116.99723 * 179.97438 * 13 12 11 15 15 O 1.21521 * 120.00407 * 359.97438 * 14 13 12 16 16 C 1.47302 * 119.99731 * 180.02562 * 14 13 12 17 17 C 1.39831 * 121.00116 * 354.26406 * 16 14 13 18 18 N 1.32183 * 118.98867 * 179.97438 * 17 16 14 19 19 C 1.31970 * 121.20578 * 0.02562 * 18 17 16 20 20 C 1.50705 * 118.87700 * 179.97438 * 19 18 17 21 21 C 1.54265 * 110.03353 * 57.91345 * 20 19 18 22 22 C 1.54969 * 104.15831 * 217.13670 * 21 20 19 23 23 C 1.54890 * 102.77685 * 37.88459 * 22 21 20 24 24 C 1.53878 * 110.03347 * 300.69440 * 20 19 18 25 25 N 1.31665 * 122.24448 * 0.02562 * 19 18 17 26 26 C 1.32979 * 120.84717 * 359.67879 * 25 19 18 27 27 N 1.37848 * 120.64287 * 180.30863 * 26 25 19 28 28 H 0.97005 * 120.00290 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.46864 * 60.00356 * 9 7 2 30 30 H 1.08996 * 109.47421 * 299.99845 * 9 7 2 31 31 H 1.09005 * 109.47111 * 59.99686 * 11 10 9 32 32 H 1.08998 * 109.46835 * 300.00447 * 11 10 9 33 33 H 1.08994 * 109.47375 * 304.99732 * 12 11 10 34 34 H 1.09001 * 109.46960 * 184.99925 * 12 11 10 35 35 H 1.08001 * 120.49806 * 0.02562 * 17 16 14 36 36 H 1.09003 * 110.01304 * 179.30621 * 20 19 18 37 37 H 1.09005 * 110.48259 * 335.78059 * 21 20 19 38 38 H 1.08992 * 110.48707 * 98.42253 * 21 20 19 39 39 H 1.08997 * 110.71934 * 279.57170 * 22 21 20 40 40 H 1.09002 * 110.76170 * 156.21835 * 22 21 20 41 41 H 1.09001 * 110.48175 * 203.40339 * 23 22 21 42 42 H 1.09000 * 110.59874 * 80.82044 * 23 22 21 43 43 H 1.08998 * 110.03139 * 238.57376 * 24 20 19 44 44 H 1.09001 * 110.03168 * 359.94847 * 24 20 19 45 45 H 0.97007 * 119.99807 * 185.66948 * 27 26 25 46 46 H 0.96991 * 120.00203 * 5.66386 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6526 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 8 2.1796 -3.5852 -0.0005 11 6 1.5650 -4.8754 -0.0011 12 6 2.6480 -5.9561 -0.0017 13 8 3.3994 -5.8891 1.2390 14 6 4.3974 -6.7804 1.3987 15 8 4.6330 -7.5918 0.5252 16 6 5.2020 -6.7719 2.6325 17 6 5.0283 -5.7762 3.5987 18 7 5.7714 -5.8072 4.6914 19 6 6.6681 -6.7567 4.8817 20 6 7.4873 -6.7411 6.1466 21 6 6.5592 -6.7884 7.3779 22 6 7.2542 -5.8670 8.4121 23 6 7.8088 -4.7202 7.5309 24 6 8.2818 -5.4269 6.2439 25 7 6.8720 -7.7165 4.0038 26 6 6.1677 -7.7710 2.8772 27 7 6.3803 -8.7814 1.9639 28 1 -0.4851 0.8401 0.0004 29 1 0.6240 -2.5566 -0.8903 30 1 0.6247 -2.5571 0.8896 31 1 0.9451 -4.9822 -0.8914 32 1 0.9446 -4.9827 0.8886 33 1 3.3215 -5.7952 -0.8435 34 1 2.1820 -6.9374 -0.0917 35 1 4.2975 -4.9941 3.4546 36 1 8.1691 -7.5915 6.1600 37 1 5.5714 -6.4022 7.1261 38 1 6.4856 -7.8061 7.7612 39 1 8.0648 -6.3943 8.9150 40 1 6.5334 -5.4847 9.1349 41 1 8.6463 -4.2293 8.0265 42 1 7.0248 -3.9979 7.3034 43 1 9.3491 -5.6395 6.3054 44 1 8.0756 -4.8008 5.3758 45 1 5.9213 -8.7673 1.1094 46 1 6.9888 -9.5064 2.1756 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815235300.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:54 Heat of formation + Delta-G solvation = -118.266157 kcal Electronic energy + Delta-G solvation = -28166.494978 eV Core-core repulsion = 24054.912838 eV Total energy + Delta-G solvation = -4111.582139 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.52855 -41.24555 -39.04236 -38.65047 -37.68725 -36.41454 -34.94764 -34.32662 -32.31405 -31.49734 -29.90613 -29.56725 -28.96397 -25.78471 -25.02563 -24.54934 -23.79335 -22.62292 -21.48291 -21.05785 -19.73664 -18.86594 -18.67542 -18.47218 -18.04640 -17.93794 -17.13231 -16.92710 -16.47937 -16.42716 -16.18881 -16.00713 -15.94092 -15.35808 -15.05658 -14.55009 -14.28306 -14.21765 -14.17084 -13.76209 -13.27351 -13.17459 -13.00020 -12.92232 -12.70830 -12.48357 -12.40653 -12.32407 -11.99817 -11.94188 -11.86950 -11.79180 -11.58044 -11.47467 -11.35956 -11.27716 -11.05494 -10.89170 -10.41486 -10.26449 -9.67746 -8.32189 -6.43938 -0.71335 0.18475 1.28090 1.40684 1.42893 1.44872 1.55103 2.13350 2.34601 2.62117 2.80311 3.02054 3.06442 3.13149 3.51352 3.58643 3.76709 3.77865 3.87058 3.91357 4.11572 4.18730 4.41974 4.46080 4.52299 4.57107 4.61474 4.64558 4.66778 4.73883 4.86498 4.88175 4.99689 5.07034 5.13008 5.18398 5.23346 5.32192 5.33532 5.43643 5.54734 5.56237 5.60987 5.95646 5.99146 6.44522 6.51306 6.63181 6.80156 7.07654 7.27693 8.79921 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.009484 B = 0.002705 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2951.698274 B =10347.353825 C =12667.267586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.008 3.992 3 Si 0.980 3.020 4 H -0.268 1.268 5 H -0.273 1.273 6 H -0.266 1.266 7 C -0.549 4.549 8 H 0.059 0.941 9 C 0.209 3.791 10 O -0.408 6.408 11 C 0.052 3.948 12 C 0.080 3.920 13 O -0.347 6.347 14 C 0.535 3.465 15 O -0.535 6.535 16 C -0.331 4.331 17 C 0.249 3.751 18 N -0.569 5.569 19 C 0.393 3.607 20 C -0.029 4.029 21 C -0.111 4.111 22 C -0.115 4.115 23 C -0.121 4.121 24 C -0.108 4.108 25 N -0.588 5.588 26 C 0.489 3.511 27 N -0.798 5.798 28 H 0.271 0.729 29 H -0.008 1.008 30 H -0.010 1.010 31 H 0.084 0.916 32 H 0.057 0.943 33 H 0.076 0.924 34 H 0.114 0.886 35 H 0.186 0.814 36 H 0.112 0.888 37 H 0.060 0.940 38 H 0.080 0.920 39 H 0.084 0.916 40 H 0.073 0.927 41 H 0.079 0.921 42 H 0.056 0.944 43 H 0.086 0.914 44 H 0.047 0.953 45 H 0.427 0.573 46 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.967 -18.617 13.149 27.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.190 4.190 3 Si 0.803 3.197 4 H -0.193 1.193 5 H -0.198 1.198 6 H -0.190 1.190 7 C -0.587 4.587 8 H 0.078 0.922 9 C 0.134 3.866 10 O -0.329 6.329 11 C -0.025 4.025 12 C 0.007 3.993 13 O -0.262 6.262 14 C 0.382 3.618 15 O -0.428 6.428 16 C -0.343 4.343 17 C 0.083 3.917 18 N -0.288 5.288 19 C 0.126 3.874 20 C -0.050 4.050 21 C -0.149 4.149 22 C -0.152 4.152 23 C -0.158 4.158 24 C -0.146 4.146 25 N -0.314 5.314 26 C 0.239 3.761 27 N -0.348 5.348 28 H 0.080 0.920 29 H 0.010 0.990 30 H 0.008 0.992 31 H 0.102 0.898 32 H 0.076 0.924 33 H 0.094 0.906 34 H 0.132 0.868 35 H 0.203 0.797 36 H 0.130 0.870 37 H 0.079 0.921 38 H 0.098 0.902 39 H 0.103 0.897 40 H 0.092 0.908 41 H 0.098 0.902 42 H 0.075 0.925 43 H 0.104 0.896 44 H 0.066 0.934 45 H 0.269 0.731 46 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 15.536 -18.730 13.565 27.860 hybrid contribution -0.936 0.444 -1.675 1.970 sum 14.600 -18.286 11.890 26.247 Atomic orbital electron populations 1.70053 1.07632 1.28657 1.50478 1.25905 0.95946 1.03224 0.93948 0.85233 0.78422 0.77272 0.78810 1.19333 1.19833 1.19026 1.21379 0.94055 0.90959 1.52262 0.92232 1.19857 0.88528 0.84325 0.93920 1.87864 1.35476 1.14178 1.95341 1.22671 0.94497 0.83319 1.01992 1.23292 0.93043 0.99471 0.83500 1.86625 1.43432 1.53967 1.42217 1.20568 0.78070 0.77532 0.85630 1.90487 1.68997 1.39449 1.43818 1.20097 1.08003 1.06266 0.99974 1.23699 0.90798 0.92415 0.84786 1.68362 1.10169 1.27262 1.22991 1.23715 0.87843 0.82428 0.93370 1.20939 0.95612 1.01086 0.87330 1.22436 0.98203 1.01043 0.93245 1.22478 1.00197 0.95736 0.96826 1.22330 1.00828 0.97862 0.94824 1.22127 0.99754 0.93955 0.98766 1.68095 1.29864 1.29461 1.03943 1.18524 0.84834 0.85429 0.87331 1.43015 1.49308 1.23603 1.18873 0.92008 0.98995 0.99189 0.89827 0.92437 0.90551 0.86818 0.79746 0.87019 0.92110 0.90172 0.89716 0.90820 0.90227 0.92490 0.89569 0.93409 0.73093 0.75047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.35 13.29 21.45 0.28 -55.07 16 2 C 0.01 0.49 5.46 84.65 0.46 0.95 16 3 Si 0.98 44.35 29.54 68.60 2.03 46.38 16 4 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 5 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 6 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 7 C -0.55 -32.60 9.43 25.60 0.24 -32.36 16 8 H 0.06 3.53 7.81 -2.91 -0.02 3.51 16 9 C 0.21 11.51 5.69 71.24 0.41 11.92 16 10 O -0.41 -19.57 10.30 -145.57 -1.50 -21.07 16 11 C 0.05 1.80 6.33 71.98 0.46 2.26 16 12 C 0.08 2.33 5.85 71.98 0.42 2.75 16 13 O -0.35 -11.00 9.55 -54.05 -0.52 -11.52 16 14 C 0.53 15.60 7.89 70.21 0.55 16.16 16 15 O -0.54 -15.47 13.61 19.77 0.27 -15.20 16 16 C -0.33 -9.01 5.92 -19.81 -0.12 -9.12 16 17 C 0.25 6.74 10.89 85.03 0.93 7.67 16 18 N -0.57 -14.91 9.37 -186.93 -1.75 -16.66 16 19 C 0.39 9.27 6.17 138.74 0.86 10.12 16 20 C -0.03 -0.50 3.29 -10.81 -0.04 -0.54 16 21 C -0.11 -1.68 6.32 31.70 0.20 -1.48 16 22 C -0.11 -1.37 6.91 31.91 0.22 -1.15 16 23 C -0.12 -1.73 6.83 31.67 0.22 -1.51 16 24 C -0.11 -1.74 6.35 31.32 0.20 -1.54 16 25 N -0.59 -14.08 10.32 -184.73 -1.91 -15.99 16 26 C 0.49 12.03 7.83 133.76 1.05 13.08 16 27 N -0.80 -15.36 8.93 -54.58 -0.49 -15.85 16 28 H 0.27 14.96 8.31 -92.70 -0.77 14.19 16 29 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 30 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 31 H 0.08 2.58 8.14 -2.38 -0.02 2.56 16 32 H 0.06 1.92 8.14 -2.39 -0.02 1.91 16 33 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.11 2.54 8.14 -2.39 -0.02 2.52 16 35 H 0.19 4.89 7.72 -2.91 -0.02 4.86 16 36 H 0.11 1.62 8.11 -2.39 -0.02 1.60 16 37 H 0.06 1.17 7.41 -2.38 -0.02 1.16 16 38 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.05 0.99 7.51 -2.39 -0.02 0.98 16 45 H 0.43 8.76 5.52 -92.70 -0.51 8.25 16 46 H 0.42 5.76 8.95 -92.72 -0.83 4.93 16 Total: -1.00 -69.86 386.42 2.15 -67.71 By element: Atomic # 1 Polarization: 20.40 SS G_CDS: -0.32 Total: 20.07 kcal Atomic # 6 Polarization: 11.14 SS G_CDS: 6.05 Total: 17.19 kcal Atomic # 7 Polarization: -99.70 SS G_CDS: -3.86 Total: -103.56 kcal Atomic # 8 Polarization: -46.04 SS G_CDS: -1.75 Total: -47.79 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -69.86 2.15 -67.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815235300.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.552 kcal (2) G-P(sol) polarization free energy of solvation -69.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds