Wall clock time and date at job start Tue Mar 31 2020 18:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 119.99690 * 2 1 4 4 H 1.48495 * 109.47465 * 270.00263 * 3 2 1 5 5 H 1.48500 * 109.47382 * 30.00748 * 3 2 1 6 6 H 1.48508 * 109.47097 * 150.00541 * 3 2 1 7 7 C 1.38808 * 120.00551 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00726 * 163.06737 * 7 2 1 9 9 N 1.36942 * 119.99684 * 343.07080 * 7 2 1 10 10 C 1.46925 * 120.62937 * 331.84560 * 9 7 2 11 11 C 1.53192 * 108.77663 * 233.58989 * 10 9 7 12 12 C 1.53041 * 109.31241 * 305.36225 * 11 10 9 13 13 N 1.46904 * 109.46014 * 181.38415 * 12 11 10 14 14 C 1.46903 * 110.99772 * 155.00284 * 13 12 11 15 15 C 1.52992 * 109.46946 * 180.02562 * 14 13 12 16 16 H 1.09000 * 109.47787 * 305.00017 * 15 14 13 17 17 O 1.42902 * 109.47218 * 65.00055 * 15 14 13 18 18 C 1.50702 * 109.47147 * 185.00064 * 15 14 13 19 19 C 1.38239 * 119.99927 * 279.72872 * 18 15 14 20 20 C 1.38233 * 119.99837 * 179.78849 * 19 18 15 21 21 C 1.38230 * 120.00248 * 0.45925 * 20 19 18 22 22 N 1.48016 * 120.00252 * 179.79084 * 21 20 19 23 23 O 1.21803 * 120.00431 * 179.97438 * 22 21 20 24 24 O 1.21797 * 120.00134 * 359.97438 * 22 21 20 25 25 C 1.38233 * 119.99901 * 359.77549 * 21 20 19 26 26 C 1.38234 * 120.00005 * 100.00058 * 18 15 14 27 27 C 1.53042 * 109.53391 * 61.36515 * 12 11 10 28 28 C 1.46924 * 120.63396 * 151.82811 * 9 7 2 29 29 H 0.96991 * 119.99920 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.58791 * 113.79871 * 10 9 7 31 31 H 1.09003 * 109.70445 * 353.44841 * 10 9 7 32 32 H 1.09005 * 109.49768 * 185.41392 * 11 10 9 33 33 H 1.08999 * 109.50206 * 65.31488 * 11 10 9 34 34 H 1.08999 * 109.46229 * 301.36050 * 12 11 10 35 35 H 1.00901 * 111.00105 * 278.95402 * 13 12 11 36 36 H 1.09003 * 109.46843 * 60.00259 * 14 13 12 37 37 H 1.09001 * 109.47212 * 300.00163 * 14 13 12 38 38 H 0.96703 * 113.99955 * 59.99898 * 17 15 14 39 39 H 1.08001 * 119.99724 * 359.97438 * 19 18 15 40 40 H 1.08006 * 120.00085 * 180.25531 * 20 19 18 41 41 H 1.07995 * 120.00217 * 180.02562 * 25 21 20 42 42 H 1.07998 * 120.00108 * 359.97438 * 26 18 15 43 43 H 1.08999 * 109.49577 * 58.59051 * 27 12 11 44 44 H 1.09004 * 109.49573 * 178.68235 * 27 12 11 45 45 H 1.09004 * 109.58498 * 246.20041 * 28 9 7 46 46 H 1.09004 * 109.58459 * 6.47796 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4476 2.6527 0.7002 6 1 3.5478 1.4403 0.7000 7 6 2.0104 -1.2020 -0.0005 8 1 3.0553 -1.2222 -0.2729 9 7 1.3702 -2.3625 0.3443 10 6 0.2263 -2.3409 1.2660 11 6 0.4977 -3.3208 2.4118 12 6 0.8122 -4.7021 1.8327 13 7 1.0405 -5.6522 2.9296 14 6 0.7603 -7.0289 2.5004 15 6 1.0082 -7.9872 3.6670 16 1 2.0215 -7.8471 4.0435 17 8 0.0707 -7.7186 4.7115 18 6 0.8401 -9.4082 3.1942 19 6 -0.4256 -9.9502 3.0700 20 6 -0.5799 -11.2522 2.6321 21 6 0.5316 -12.0154 2.3276 22 7 0.3665 -13.4111 1.8633 23 8 1.3459 -14.0835 1.5945 24 8 -0.7488 -13.8873 1.7499 25 6 1.7974 -11.4751 2.4565 26 6 1.9517 -10.1716 2.8902 27 6 2.0676 -4.6179 0.9615 28 6 1.8140 -3.6527 -0.2007 29 1 -0.4849 0.8400 0.0004 30 1 -0.6769 -2.6410 0.7347 31 1 0.0968 -1.3358 1.6677 32 1 -0.3829 -3.3862 3.0510 33 1 1.3474 -2.9697 2.9973 34 1 -0.0279 -5.0418 1.2270 35 1 1.9794 -5.5698 3.2899 36 1 1.4152 -7.2907 1.6692 37 1 -0.2793 -7.1058 2.1821 38 1 -0.8536 -7.8239 4.4472 39 1 -1.2938 -9.3553 3.3121 40 1 -1.5689 -11.6743 2.5311 41 1 2.6659 -12.0712 2.2183 42 1 2.9407 -9.7495 2.9911 43 1 2.9025 -4.2546 1.5606 44 1 2.3044 -5.6066 0.5682 45 1 1.0403 -4.0599 -0.8517 46 1 2.7333 -3.5124 -0.7693 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819035169.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:01 Heat of formation + Delta-G solvation = -5.863400 kcal Electronic energy + Delta-G solvation = -28177.549889 eV Core-core repulsion = 24070.841899 eV Total energy + Delta-G solvation = -4106.707990 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 2.10 seconds Orbital eigenvalues (eV) -42.54971 -40.47809 -38.43868 -37.35922 -36.92529 -34.94074 -32.99100 -32.13070 -31.96541 -30.36000 -29.66098 -28.20860 -26.16614 -24.54089 -23.85879 -23.14976 -22.18243 -21.74884 -21.41581 -19.83331 -19.33353 -19.02562 -17.89016 -17.83024 -16.96449 -16.51501 -15.93530 -15.49333 -15.16179 -14.96356 -14.70159 -14.41352 -14.28239 -13.93820 -13.73845 -13.52060 -13.41099 -13.02709 -12.94491 -12.34986 -12.18800 -12.17211 -11.92686 -11.71280 -11.57273 -11.49545 -11.47890 -11.14216 -10.85442 -10.75094 -10.66557 -10.31684 -10.29656 -10.06905 -9.97505 -9.91034 -9.78691 -9.50723 -8.53669 -8.21468 -6.71921 -5.83065 -3.25717 -0.63693 0.37819 0.87562 0.99785 2.67610 3.34212 3.41551 3.43657 3.62878 3.78695 3.91430 3.96591 4.28299 4.33248 4.45791 4.48478 4.59576 4.66902 4.79286 5.04659 5.16882 5.19142 5.22386 5.25334 5.36661 5.39180 5.44630 5.59032 5.68825 5.71202 5.77353 5.98330 6.01845 6.21630 6.37839 6.48316 6.54279 6.62072 6.77031 6.86030 7.13831 7.20109 7.25441 7.31363 7.48043 7.63576 7.75608 8.41282 9.17370 9.80535 10.37076 11.25580 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.026595 B = 0.001896 C = 0.001856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.571562 B =14762.285145 C =15086.306841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.002 3.998 3 Si 0.902 3.098 4 H -0.287 1.287 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.254 4.254 8 H 0.064 0.936 9 N -0.592 5.592 10 C 0.170 3.830 11 C -0.124 4.124 12 C 0.096 3.904 13 N -0.677 5.677 14 C 0.032 3.968 15 C 0.145 3.855 16 H 0.115 0.885 17 O -0.535 6.535 18 C -0.059 4.059 19 C -0.110 4.110 20 C -0.049 4.049 21 C -0.049 4.049 22 N 0.029 4.971 23 O -0.161 6.161 24 O -0.160 6.160 25 C -0.051 4.051 26 C -0.108 4.108 27 C -0.160 4.160 28 C 0.149 3.851 29 H 0.254 0.746 30 H 0.016 0.984 31 H 0.089 0.911 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.068 0.932 35 H 0.339 0.661 36 H 0.040 0.960 37 H 0.077 0.923 38 H 0.374 0.626 39 H 0.148 0.852 40 H 0.155 0.845 41 H 0.155 0.845 42 H 0.150 0.850 43 H 0.060 0.940 44 H 0.043 0.957 45 H 0.015 0.985 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.700 -21.820 7.884 23.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.196 4.196 3 Si 0.732 3.268 4 H -0.214 1.214 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.383 4.383 8 H 0.082 0.918 9 N -0.315 5.315 10 C 0.044 3.956 11 C -0.164 4.164 12 C -0.013 4.013 13 N -0.307 5.307 14 C -0.098 4.098 15 C 0.085 3.915 16 H 0.132 0.868 17 O -0.340 6.340 18 C -0.060 4.060 19 C -0.129 4.129 20 C -0.068 4.068 21 C -0.131 4.131 22 N 0.548 4.452 23 O -0.377 6.377 24 O -0.376 6.376 25 C -0.070 4.070 26 C -0.127 4.127 27 C -0.201 4.201 28 C 0.022 3.978 29 H 0.064 0.936 30 H 0.034 0.966 31 H 0.107 0.893 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.086 0.914 35 H 0.157 0.843 36 H 0.058 0.942 37 H 0.095 0.905 38 H 0.222 0.778 39 H 0.165 0.835 40 H 0.173 0.827 41 H 0.173 0.827 42 H 0.168 0.832 43 H 0.079 0.921 44 H 0.062 0.938 45 H 0.033 0.967 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.578 -20.781 8.717 22.543 hybrid contribution 0.676 0.067 -1.195 1.375 sum 1.254 -20.715 7.522 22.074 Atomic orbital electron populations 1.70024 1.05273 1.25566 1.53796 1.25050 0.95296 0.98446 1.00833 0.86310 0.79179 0.83642 0.77711 1.21400 1.21495 1.20495 1.19150 0.92494 0.84815 1.41881 0.91826 1.44067 1.35931 1.01416 1.50071 1.20804 0.88467 0.98335 0.87981 1.22176 1.00626 0.93875 0.99731 1.21561 0.96859 0.92950 0.89911 1.60683 1.32576 1.02454 1.34952 1.22629 1.02030 0.89982 0.95195 1.20979 0.95343 0.86621 0.88558 0.86766 1.86705 1.18828 1.91849 1.36655 1.21223 0.93559 0.97705 0.93550 1.20986 0.97894 0.94271 0.99726 1.21052 0.98658 0.93441 0.93678 1.21160 0.96981 0.83168 1.11834 1.43633 1.00509 1.02987 0.98069 1.94549 1.30837 1.59531 1.52766 1.94548 1.11763 1.74610 1.56704 1.21085 0.95814 0.95782 0.94308 1.21105 0.99867 0.92438 0.99269 1.22699 0.98470 0.98855 1.00084 1.20799 0.97552 0.87007 0.92443 0.93586 0.96579 0.89315 0.92641 0.92766 0.91408 0.84348 0.94180 0.90483 0.77761 0.83460 0.82704 0.82730 0.83242 0.92126 0.93822 0.96716 0.92918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.84 11.19 55.49 0.62 -25.22 16 2 C 0.00 0.07 4.92 -17.43 -0.09 -0.02 16 3 Si 0.90 21.38 29.59 -169.99 -5.03 16.35 16 4 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.25 -6.85 9.58 -15.06 -0.14 -7.00 16 8 H 0.06 1.69 7.89 -52.49 -0.41 1.28 16 9 N -0.59 -14.44 2.99 -172.32 -0.52 -14.96 16 10 C 0.17 3.95 5.30 -3.71 -0.02 3.93 16 11 C -0.12 -2.28 5.69 -26.61 -0.15 -2.43 16 12 C 0.10 1.47 2.43 -67.67 -0.16 1.30 16 13 N -0.68 -8.08 6.20 -106.68 -0.66 -8.74 16 14 C 0.03 0.28 5.10 -3.83 -0.02 0.26 16 15 C 0.15 1.02 3.39 -27.89 -0.09 0.93 16 16 H 0.11 0.76 8.00 -51.93 -0.42 0.35 16 17 O -0.54 -4.47 13.13 -35.23 -0.46 -4.93 16 18 C -0.06 -0.36 4.97 -104.62 -0.52 -0.88 16 19 C -0.11 -0.61 9.32 -39.58 -0.37 -0.98 16 20 C -0.05 -0.33 9.56 -39.59 -0.38 -0.71 16 21 C -0.05 -0.41 6.85 -79.95 -0.55 -0.96 16 22 N 0.03 0.31 4.45 33.96 0.15 0.46 16 23 O -0.16 -1.87 18.45 -29.46 -0.54 -2.41 16 24 O -0.16 -1.86 18.45 -29.46 -0.54 -2.40 16 25 C -0.05 -0.34 9.56 -39.58 -0.38 -0.72 16 26 C -0.11 -0.61 9.67 -39.58 -0.38 -1.00 16 27 C -0.16 -2.54 5.33 -26.61 -0.14 -2.68 16 28 C 0.15 3.01 6.52 -3.72 -0.02 2.98 16 29 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 30 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.09 2.33 6.07 -51.93 -0.31 2.01 16 32 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.07 1.08 7.80 -51.93 -0.40 0.68 16 35 H 0.34 3.88 8.48 -39.29 -0.33 3.55 16 36 H 0.04 0.36 7.41 -51.93 -0.38 -0.02 16 37 H 0.08 0.68 8.06 -51.93 -0.42 0.26 16 38 H 0.37 1.98 7.50 45.56 0.34 2.32 16 39 H 0.15 0.47 6.78 -52.49 -0.36 0.12 16 40 H 0.16 0.85 7.61 -52.48 -0.40 0.45 16 41 H 0.16 0.86 7.61 -52.49 -0.40 0.46 16 42 H 0.15 0.53 8.04 -52.49 -0.42 0.11 16 43 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 44 H 0.04 0.59 7.42 -51.93 -0.39 0.21 16 45 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 46 H 0.05 1.05 7.93 -51.93 -0.41 0.64 16 LS Contribution 379.56 15.07 5.72 5.72 Total: -1.00 -31.79 379.56 -10.65 -42.44 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -5.97 Total: 1.67 kcal Atomic # 6 Polarization: -4.56 SS G_CDS: -3.42 Total: -7.98 kcal Atomic # 7 Polarization: -48.05 SS G_CDS: -0.40 Total: -48.46 kcal Atomic # 8 Polarization: -8.20 SS G_CDS: -1.55 Total: -9.75 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.03 Total: 16.35 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.79 -10.65 -42.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819035169.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.578 kcal (2) G-P(sol) polarization free energy of solvation -31.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.10 seconds