Wall clock time and date at job start Tue Mar 31 2020 18:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86795 * 120.00323 * 2 1 4 4 H 1.48499 * 109.47320 * 270.00149 * 3 2 1 5 5 H 1.48500 * 109.47299 * 29.99975 * 3 2 1 6 6 H 1.48507 * 109.47261 * 150.00156 * 3 2 1 7 7 C 1.38810 * 119.99689 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00151 * 163.17280 * 7 2 1 9 9 N 1.36934 * 120.00385 * 343.17004 * 7 2 1 10 10 C 1.46921 * 120.63409 * 151.92408 * 9 7 2 11 11 C 1.53197 * 108.89220 * 126.46494 * 10 9 7 12 12 C 1.53041 * 109.31035 * 54.56963 * 11 10 9 13 13 N 1.46902 * 109.45620 * 178.61515 * 12 11 10 14 14 C 1.46903 * 110.99477 * 204.99438 * 13 12 11 15 15 C 1.53002 * 109.46790 * 179.97438 * 14 13 12 16 16 H 1.09003 * 109.46752 * 60.00523 * 15 14 13 17 17 O 1.42893 * 109.47488 * 300.00467 * 15 14 13 18 18 C 1.50700 * 109.47083 * 180.02562 * 15 14 13 19 19 C 1.38263 * 119.99999 * 85.00256 * 18 15 14 20 20 C 1.38214 * 120.00016 * 179.97438 * 19 18 15 21 21 C 1.38256 * 119.99963 * 359.96215 * 20 19 18 22 22 C 1.38207 * 120.00031 * 359.97438 * 21 20 19 23 23 N 1.48024 * 119.99892 * 180.02562 * 22 21 20 24 24 O 1.21797 * 119.99755 * 359.97438 * 23 22 21 25 25 O 1.21798 * 120.00052 * 179.97438 * 23 22 21 26 26 C 1.38217 * 120.00246 * 264.73426 * 18 15 14 27 27 C 1.53042 * 109.53415 * 298.63246 * 12 11 10 28 28 C 1.46963 * 120.65445 * 331.75076 * 9 7 2 29 29 H 0.97000 * 119.99637 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.58939 * 6.60799 * 10 9 7 31 31 H 1.09004 * 109.59158 * 246.32678 * 10 9 7 32 32 H 1.09005 * 109.49517 * 174.51677 * 11 10 9 33 33 H 1.08998 * 109.49550 * 294.61371 * 11 10 9 34 34 H 1.08996 * 109.45993 * 58.63917 * 12 11 10 35 35 H 1.00897 * 110.99834 * 81.04561 * 13 12 11 36 36 H 1.09000 * 109.47576 * 299.99904 * 14 13 12 37 37 H 1.09003 * 109.47045 * 60.00356 * 14 13 12 38 38 H 0.96698 * 114.00286 * 299.99629 * 17 15 14 39 39 H 1.07999 * 119.99447 * 359.97438 * 19 18 15 40 40 H 1.08000 * 119.99729 * 179.97438 * 20 19 18 41 41 H 1.07998 * 119.99612 * 180.02562 * 21 20 19 42 42 H 1.07994 * 119.99995 * 359.97438 * 26 18 15 43 43 H 1.09004 * 109.49452 * 181.32235 * 27 12 11 44 44 H 1.08996 * 109.50041 * 301.41419 * 27 12 11 45 45 H 1.09000 * 109.47297 * 113.74148 * 28 9 7 46 46 H 1.09005 * 109.70555 * 353.46012 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6526 0.7000 6 1 3.5479 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0555 -1.2222 -0.2713 9 7 1.3695 -2.3628 0.3423 10 6 1.8153 -3.6528 -0.2016 11 6 2.0655 -4.6207 0.9593 12 6 0.8079 -4.7057 1.8273 13 7 1.0329 -5.6583 2.9227 14 6 -0.2376 -6.2180 3.4027 15 6 0.0368 -7.2038 4.5402 16 1 0.5372 -6.6849 5.3578 17 8 0.8729 -8.2601 4.0638 18 6 -1.2665 -7.7785 5.0323 19 6 -1.8236 -8.8725 4.3962 20 6 -3.0187 -9.3999 4.8479 21 6 -3.6566 -8.8340 5.9361 22 6 -3.0991 -7.7413 6.5727 23 7 -3.7818 -7.1359 7.7382 24 8 -4.8352 -7.6004 8.1359 25 8 -3.2903 -6.1732 8.2995 26 6 -1.9022 -7.2155 6.1228 27 6 0.4931 -3.3254 2.4085 28 6 0.2252 -2.3429 1.2642 29 1 -0.4849 0.8401 0.0004 30 1 2.7375 -3.5126 -0.7655 31 1 1.0447 -4.0592 -0.8567 32 1 2.3025 -5.6087 0.5645 33 1 2.8993 -4.2592 1.5611 34 1 -0.0311 -5.0433 1.2189 35 1 1.5461 -5.2273 3.6770 36 1 -0.8756 -5.4122 3.7658 37 1 -0.7379 -6.7372 2.5852 38 1 0.4902 -8.7660 3.3340 39 1 -1.3249 -9.3148 3.5465 40 1 -3.4540 -10.2542 4.3508 41 1 -4.5902 -9.2464 6.2893 42 1 -1.4647 -6.3640 6.6226 43 1 -0.3890 -3.3914 3.0454 44 1 1.3417 -2.9761 2.9967 45 1 -0.6770 -2.6412 0.7300 46 1 0.0956 -1.3386 1.6676 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819035189.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:52 Heat of formation + Delta-G solvation = -5.415605 kcal Electronic energy + Delta-G solvation = -28454.589872 eV Core-core repulsion = 24347.901299 eV Total energy + Delta-G solvation = -4106.688572 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 2.09 seconds Orbital eigenvalues (eV) -42.50678 -40.43217 -38.39857 -37.32882 -36.86796 -34.89069 -32.78098 -32.41649 -32.02508 -30.06793 -29.69253 -27.43416 -26.97250 -24.77240 -23.45366 -23.16348 -22.16342 -21.74827 -21.40623 -19.50420 -19.27445 -18.96494 -17.83787 -17.48594 -17.01671 -16.63582 -16.46411 -15.51895 -15.12167 -14.83770 -14.67709 -14.65153 -14.04759 -13.66288 -13.61155 -13.56759 -13.16089 -12.88879 -12.83070 -12.54797 -12.26300 -12.15531 -11.87871 -11.60136 -11.52344 -11.44072 -11.43754 -11.08889 -10.80032 -10.71625 -10.57802 -10.46209 -10.22330 -10.13160 -10.06720 -9.76903 -9.71546 -9.52071 -8.53193 -8.15979 -6.69703 -5.81879 -3.24126 -0.57457 0.35124 0.94045 1.03022 2.70624 3.35381 3.42658 3.45051 3.60809 3.86868 3.95963 4.14580 4.24968 4.36888 4.44249 4.47611 4.58685 4.70938 4.86610 5.02038 5.17490 5.25380 5.29224 5.38454 5.41650 5.45551 5.52582 5.60491 5.66543 5.77059 5.86132 6.06053 6.09548 6.27018 6.36345 6.48743 6.54457 6.60215 6.78076 6.96125 7.17931 7.25068 7.28029 7.30243 7.49112 7.60407 7.77012 8.42447 9.18578 9.82271 10.38975 11.26875 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015470 B = 0.002291 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.574593 B =12217.697105 C =13415.053779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.001 3.999 3 Si 0.902 3.098 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.252 4.252 8 H 0.065 0.935 9 N -0.592 5.592 10 C 0.144 3.856 11 C -0.116 4.116 12 C 0.095 3.905 13 N -0.678 5.678 14 C 0.031 3.969 15 C 0.152 3.848 16 H 0.113 0.887 17 O -0.535 6.535 18 C -0.109 4.109 19 C -0.059 4.059 20 C -0.112 4.112 21 C -0.058 4.058 22 C -0.041 4.041 23 N 0.027 4.973 24 O -0.160 6.160 25 O -0.156 6.156 26 C -0.046 4.046 27 C -0.168 4.168 28 C 0.176 3.824 29 H 0.253 0.747 30 H 0.055 0.945 31 H 0.015 0.985 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.067 0.933 35 H 0.340 0.660 36 H 0.042 0.958 37 H 0.075 0.925 38 H 0.373 0.627 39 H 0.143 0.857 40 H 0.150 0.850 41 H 0.154 0.846 42 H 0.155 0.845 43 H 0.042 0.958 44 H 0.057 0.943 45 H 0.015 0.985 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.340 -21.382 10.164 24.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.197 4.197 3 Si 0.731 3.269 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.381 4.381 8 H 0.083 0.917 9 N -0.315 5.315 10 C 0.018 3.982 11 C -0.156 4.156 12 C -0.014 4.014 13 N -0.307 5.307 14 C -0.099 4.099 15 C 0.092 3.908 16 H 0.131 0.869 17 O -0.340 6.340 18 C -0.111 4.111 19 C -0.078 4.078 20 C -0.131 4.131 21 C -0.077 4.077 22 C -0.124 4.124 23 N 0.547 4.453 24 O -0.376 6.376 25 O -0.373 6.373 26 C -0.065 4.065 27 C -0.209 4.209 28 C 0.049 3.951 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.033 0.967 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.158 0.842 36 H 0.060 0.940 37 H 0.093 0.907 38 H 0.221 0.779 39 H 0.161 0.839 40 H 0.168 0.832 41 H 0.171 0.829 42 H 0.173 0.827 43 H 0.061 0.939 44 H 0.076 0.924 45 H 0.034 0.966 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.587 -21.833 9.627 24.298 hybrid contribution -0.770 1.678 0.437 1.897 sum -5.358 -20.155 10.063 23.156 Atomic orbital electron populations 1.70028 1.05298 1.25502 1.54040 1.25051 0.95290 0.98455 1.00925 0.86309 0.79178 0.83623 0.77748 1.21355 1.21566 1.20470 1.19177 0.92530 0.84799 1.41629 0.91700 1.44049 1.35810 1.01662 1.49991 1.20927 0.97631 0.86784 0.92907 1.21972 0.96630 0.99032 0.97969 1.21535 0.98436 0.89717 0.91677 1.60665 1.17843 1.39154 1.13077 1.22624 0.93124 0.97282 0.96875 1.20848 0.85911 0.87653 0.96405 0.86940 1.86693 1.45571 1.46839 1.54881 1.20717 0.98580 0.96652 0.95171 1.21424 0.94333 0.93770 0.98231 1.21213 0.95242 1.00761 0.95853 1.21115 1.00306 0.92247 0.94024 1.21115 0.97637 1.00807 0.92819 1.43626 1.00401 0.99934 1.01309 1.94538 1.10089 1.64842 1.68149 1.94572 1.68158 1.17003 1.57528 1.20904 0.91705 0.99060 0.94820 1.22865 0.99923 0.97547 1.00584 1.20670 0.88668 0.97975 0.87786 0.93656 0.92663 0.96674 0.92550 0.92426 0.91469 0.84241 0.94034 0.90659 0.77936 0.83891 0.83232 0.82851 0.82726 0.93884 0.92434 0.96649 0.89569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.13 11.20 55.49 0.62 -25.51 16 2 C 0.00 0.03 4.92 -17.43 -0.09 -0.05 16 3 Si 0.90 21.60 29.59 -169.99 -5.03 16.57 16 4 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.25 -6.86 9.58 -15.06 -0.14 -7.01 16 8 H 0.07 1.74 7.88 -52.49 -0.41 1.33 16 9 N -0.59 -14.63 3.00 -172.29 -0.52 -15.14 16 10 C 0.14 2.97 6.51 -3.71 -0.02 2.94 16 11 C -0.12 -1.97 5.69 -26.61 -0.15 -2.12 16 12 C 0.10 1.49 2.43 -67.67 -0.16 1.33 16 13 N -0.68 -8.41 6.12 -106.68 -0.65 -9.06 16 14 C 0.03 0.30 5.13 -3.82 -0.02 0.28 16 15 C 0.15 1.20 3.42 -27.88 -0.10 1.11 16 16 H 0.11 0.90 8.05 -51.93 -0.42 0.48 16 17 O -0.53 -4.54 13.00 -35.23 -0.46 -5.00 16 18 C -0.11 -0.77 5.00 -104.62 -0.52 -1.29 16 19 C -0.06 -0.31 9.33 -39.58 -0.37 -0.68 16 20 C -0.11 -0.53 10.05 -39.58 -0.40 -0.93 16 21 C -0.06 -0.39 9.55 -39.59 -0.38 -0.77 16 22 C -0.04 -0.38 6.85 -79.95 -0.55 -0.92 16 23 N 0.03 0.32 4.45 33.96 0.15 0.47 16 24 O -0.16 -1.96 18.45 -29.46 -0.54 -2.50 16 25 O -0.16 -2.01 18.45 -29.46 -0.54 -2.56 16 26 C -0.05 -0.38 9.19 -39.58 -0.36 -0.74 16 27 C -0.17 -3.04 5.33 -26.61 -0.14 -3.18 16 28 C 0.18 4.10 5.30 -3.69 -0.02 4.08 16 29 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 30 H 0.05 1.12 7.93 -51.93 -0.41 0.71 16 31 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.07 1.09 7.80 -51.93 -0.40 0.69 16 35 H 0.34 4.20 8.48 -39.29 -0.33 3.87 16 36 H 0.04 0.44 7.41 -51.93 -0.38 0.06 16 37 H 0.07 0.70 8.06 -51.93 -0.42 0.29 16 38 H 0.37 1.94 7.39 45.56 0.34 2.28 16 39 H 0.14 0.37 6.61 -52.49 -0.35 0.02 16 40 H 0.15 0.28 8.06 -52.49 -0.42 -0.14 16 41 H 0.15 0.83 7.61 -52.49 -0.40 0.43 16 42 H 0.16 1.21 7.61 -52.49 -0.40 0.81 16 43 H 0.04 0.71 7.42 -51.93 -0.39 0.32 16 44 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 45 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.09 2.28 6.07 -51.93 -0.32 1.97 16 LS Contribution 379.26 15.07 5.72 5.72 Total: -1.00 -32.12 379.26 -10.65 -42.77 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -5.97 Total: 2.20 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: -3.43 Total: -7.96 kcal Atomic # 7 Polarization: -48.85 SS G_CDS: -0.40 Total: -49.24 kcal Atomic # 8 Polarization: -8.51 SS G_CDS: -1.55 Total: -10.06 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.03 Total: 16.57 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.12 -10.65 -42.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819035189.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.358 kcal (2) G-P(sol) polarization free energy of solvation -32.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.09 seconds