Wall clock time and date at job start Tue Mar 31 2020 18:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31552 * 1 3 3 Si 1.86803 * 120.00020 * 2 1 4 4 H 1.48505 * 109.47119 * 180.02562 * 3 2 1 5 5 H 1.48491 * 109.47499 * 300.00270 * 3 2 1 6 6 H 1.48504 * 109.47039 * 60.00712 * 3 2 1 7 7 C 1.38657 * 120.00195 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00187 * 179.97438 * 7 2 1 9 9 O 1.34835 * 119.99453 * 359.97438 * 7 2 1 10 10 C 1.35752 * 116.99646 * 174.96294 * 9 7 2 11 11 C 1.38957 * 120.03323 * 5.37162 * 10 9 7 12 12 C 1.38119 * 120.06627 * 179.97438 * 11 10 9 13 13 C 1.38201 * 120.13878 * 359.78329 * 12 11 10 14 14 C 1.38912 * 120.06748 * 0.46906 * 13 12 11 15 15 N 1.39948 * 120.03215 * 179.78997 * 14 13 12 16 16 C 1.34783 * 119.99865 * 214.84673 * 15 14 13 17 17 O 1.21589 * 119.99895 * 355.49054 * 16 15 14 18 18 N 1.34770 * 120.00191 * 175.49239 * 16 15 14 19 19 C 1.46501 * 120.00130 * 179.72488 * 18 16 15 20 20 C 1.53000 * 109.47317 * 180.27710 * 19 18 16 21 21 N 1.46901 * 109.47105 * 179.97438 * 20 19 18 22 22 C 1.47849 * 111.00056 * 290.84074 * 21 20 19 23 23 C 1.54898 * 104.79393 * 213.63898 * 22 21 20 24 24 C 1.55135 * 101.65754 * 37.06867 * 23 22 21 25 25 H 1.09010 * 110.70586 * 82.73131 * 24 23 22 26 26 O 1.42898 * 110.71048 * 205.96234 * 24 23 22 27 27 C 1.47448 * 110.99827 * 169.99889 * 21 20 19 28 28 C 1.38730 * 120.03368 * 185.34079 * 10 9 7 29 29 H 0.97001 * 120.00115 * 359.97438 * 1 2 3 30 30 H 1.07994 * 119.96024 * 359.97089 * 11 10 9 31 31 H 1.08005 * 119.92998 * 180.02562 * 12 11 10 32 32 H 1.08000 * 119.96616 * 180.23342 * 13 12 11 33 33 H 0.96995 * 120.00722 * 34.85068 * 15 14 13 34 34 H 0.97003 * 120.00169 * 0.02562 * 18 16 15 35 35 H 1.09004 * 109.46908 * 300.27426 * 19 18 16 36 36 H 1.08996 * 109.47470 * 60.27344 * 19 18 16 37 37 H 1.08996 * 109.47059 * 300.00003 * 20 19 18 38 38 H 1.09004 * 109.47005 * 59.99713 * 20 19 18 39 39 H 1.09004 * 110.37290 * 332.46557 * 22 21 20 40 40 H 1.08997 * 110.37256 * 94.80648 * 22 21 20 41 41 H 1.09000 * 110.99133 * 278.97161 * 23 22 21 42 42 H 1.09010 * 111.02249 * 155.17557 * 23 22 21 43 43 H 0.96700 * 113.99870 * 293.60342 * 26 24 23 44 44 H 1.09000 * 109.88591 * 242.66144 * 27 21 20 45 45 H 1.09000 * 109.88680 * 3.84982 * 27 21 20 46 46 H 1.07998 * 120.06899 * 0.02562 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.7096 1.3464 -0.0006 5 1 1.8908 2.3965 -1.2124 6 1 1.8909 2.3964 1.2126 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3346 -2.3684 -0.0005 10 6 2.0699 -3.5046 -0.1073 11 6 3.4578 -3.4382 -0.0978 12 6 4.2066 -4.5938 -0.2058 13 6 3.5785 -5.8196 -0.3191 14 6 2.1913 -5.8920 -0.3345 15 7 1.5560 -7.1333 -0.4538 16 6 0.4007 -7.2358 -1.1403 17 8 -0.1322 -6.2380 -1.5861 18 7 -0.1638 -8.4444 -1.3328 19 6 -1.4227 -8.5552 -2.0739 20 6 -1.8466 -10.0237 -2.1424 21 7 -3.1093 -10.1347 -2.8850 22 6 -4.2288 -9.5490 -2.1172 23 6 -5.4569 -10.4196 -2.4821 24 6 -4.8217 -11.8314 -2.5819 25 1 -4.7326 -12.2847 -1.5945 26 8 -5.5827 -12.6673 -3.4561 27 6 -3.4277 -11.5442 -3.1782 28 6 1.4364 -4.7331 -0.2253 29 1 -0.4850 0.8400 0.0004 30 1 3.9514 -2.4821 -0.0059 31 1 5.2853 -4.5398 -0.1977 32 1 4.1667 -6.7218 -0.3996 33 1 1.9470 -7.9198 -0.0423 34 1 0.2611 -9.2404 -0.9768 35 1 -2.1952 -7.9774 -1.5663 36 1 -1.2850 -8.1692 -3.0839 37 1 -1.0742 -10.6015 -2.6499 38 1 -1.9844 -10.4096 -1.1324 39 1 -4.0268 -9.6071 -1.0476 40 1 -4.3944 -8.5143 -2.4173 41 1 -5.8819 -10.1142 -3.4382 42 1 -6.2091 -10.3847 -1.6939 43 1 -6.4674 -12.8779 -3.1275 44 1 -3.4455 -11.7038 -4.2563 45 1 -2.6855 -12.1957 -2.7168 46 1 0.3578 -4.7873 -0.2329 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000860462211.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:51 Heat of formation + Delta-G solvation = -58.733782 kcal Electronic energy + Delta-G solvation = -27596.792386 eV Core-core repulsion = 23487.791764 eV Total energy + Delta-G solvation = -4109.000622 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.35115 -39.75943 -38.66574 -36.94412 -36.45150 -34.83746 -34.01347 -32.19124 -31.77406 -29.60392 -29.21129 -28.44526 -27.15653 -25.22714 -23.47941 -22.26798 -21.62115 -21.32056 -21.18009 -20.53091 -18.39430 -18.22789 -18.08574 -17.04084 -16.53145 -16.00215 -15.81628 -15.15820 -15.03824 -14.98323 -14.64694 -14.50752 -14.31598 -14.19463 -13.84957 -13.68338 -13.47126 -13.33424 -12.93236 -12.75500 -12.42549 -12.21250 -12.05650 -11.72829 -11.70582 -11.56301 -11.38228 -11.24659 -11.14976 -10.98230 -10.73705 -10.45874 -10.39456 -9.92891 -9.65045 -9.19345 -9.08779 -8.82281 -8.76443 -7.60558 -7.11914 -6.36428 -3.95434 2.14728 2.41097 2.60419 3.17068 3.18827 3.24542 3.39085 3.43248 3.67663 4.02280 4.11922 4.20237 4.32962 4.50871 4.56678 4.66539 4.71525 4.82576 5.00254 5.07467 5.10418 5.18151 5.31542 5.38651 5.47642 5.58513 5.63524 5.67442 5.67824 5.78674 5.89245 6.15193 6.28338 6.31325 6.42753 6.46547 6.57463 6.59249 6.89195 7.08990 7.09975 7.13030 7.28746 7.41005 7.55735 7.88193 8.07375 8.09536 8.72982 9.08583 9.80949 10.81680 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016993 B = 0.001926 C = 0.001747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.370407 B =14533.820617 C =16020.487306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.038 3.962 3 Si 0.941 3.059 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.277 1.277 7 C -0.390 4.390 8 H 0.093 0.907 9 O -0.175 6.175 10 C 0.167 3.833 11 C -0.246 4.246 12 C -0.059 4.059 13 C -0.237 4.237 14 C 0.192 3.808 15 N -0.682 5.682 16 C 0.699 3.301 17 O -0.557 6.557 18 N -0.748 5.748 19 C 0.142 3.858 20 C 0.040 3.960 21 N -0.520 5.520 22 C 0.038 3.962 23 C -0.163 4.163 24 C 0.081 3.919 25 H 0.064 0.936 26 O -0.560 6.560 27 C 0.050 3.950 28 C -0.186 4.186 29 H 0.269 0.731 30 H 0.127 0.873 31 H 0.111 0.889 32 H 0.107 0.893 33 H 0.401 0.599 34 H 0.393 0.607 35 H 0.068 0.932 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.043 0.957 39 H 0.053 0.947 40 H 0.091 0.909 41 H 0.087 0.913 42 H 0.077 0.923 43 H 0.381 0.619 44 H 0.092 0.908 45 H 0.063 0.937 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.330 -25.458 -1.623 26.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.167 4.167 3 Si 0.766 3.234 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.467 4.467 8 H 0.110 0.890 9 O -0.078 6.078 10 C 0.112 3.888 11 C -0.266 4.266 12 C -0.078 4.078 13 C -0.258 4.258 14 C 0.098 3.902 15 N -0.329 5.329 16 C 0.399 3.601 17 O -0.431 6.431 18 N -0.405 5.405 19 C 0.018 3.982 20 C -0.088 4.088 21 N -0.245 5.245 22 C -0.089 4.089 23 C -0.201 4.201 24 C 0.021 3.979 25 H 0.082 0.918 26 O -0.365 6.365 27 C -0.077 4.077 28 C -0.208 4.208 29 H 0.079 0.921 30 H 0.145 0.855 31 H 0.129 0.871 32 H 0.125 0.875 33 H 0.235 0.765 34 H 0.226 0.774 35 H 0.086 0.914 36 H 0.096 0.904 37 H 0.101 0.899 38 H 0.061 0.939 39 H 0.071 0.929 40 H 0.109 0.891 41 H 0.106 0.894 42 H 0.096 0.904 43 H 0.228 0.772 44 H 0.110 0.890 45 H 0.081 0.919 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -5.703 -24.024 -2.887 24.859 hybrid contribution 0.344 -0.473 1.515 1.624 sum -5.359 -24.497 -1.372 25.114 Atomic orbital electron populations 1.70066 1.05949 1.27439 1.46134 1.25305 0.95838 0.98823 0.96691 0.85643 0.79114 0.80442 0.78167 1.19101 1.20195 1.20227 1.21392 0.91826 0.80818 1.52646 0.88954 1.83996 1.34246 1.11331 1.78186 1.19147 0.89990 0.87866 0.91771 1.21175 0.93767 0.99051 1.12629 1.20476 0.98325 0.91667 0.97311 1.20235 0.91774 0.97696 1.16143 1.16946 0.90518 0.83217 0.99490 1.42447 1.24261 1.10215 1.55989 1.15919 0.80919 0.83762 0.79510 1.91039 1.63039 1.34877 1.54151 1.44965 1.26713 1.07451 1.61414 1.21044 0.84595 0.95165 0.97434 1.22489 0.92588 0.96924 0.96842 1.63492 1.02177 1.14988 1.43886 1.23094 0.89362 1.00105 0.96336 1.23436 0.98028 0.95358 1.03314 1.23052 0.92320 0.89839 0.92668 0.91835 1.86503 1.31135 1.70354 1.48466 1.22724 0.93888 0.88218 1.02900 1.20192 1.00760 0.89160 1.10665 0.92137 0.85497 0.87088 0.87485 0.76501 0.77409 0.91416 0.90391 0.89885 0.93908 0.92901 0.89092 0.89414 0.90433 0.77189 0.88952 0.91873 0.84701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -26.20 13.67 55.48 0.76 -25.44 16 2 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 3 Si 0.94 21.12 29.55 -169.99 -5.02 16.09 16 4 H -0.27 -5.70 7.11 56.52 0.40 -5.29 16 5 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 6 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.39 -11.31 9.49 30.89 0.29 -11.02 16 8 H 0.09 2.46 5.20 -52.49 -0.27 2.19 16 9 O -0.17 -5.26 9.76 0.03 0.00 -5.26 16 10 C 0.17 4.31 6.64 -39.13 -0.26 4.05 16 11 C -0.25 -5.54 9.17 -39.36 -0.36 -5.90 16 12 C -0.06 -1.09 10.03 -39.64 -0.40 -1.49 16 13 C -0.24 -4.13 9.96 -39.35 -0.39 -4.52 16 14 C 0.19 3.68 6.30 -83.72 -0.53 3.16 16 15 N -0.68 -10.07 5.34 -14.24 -0.08 -10.15 16 16 C 0.70 11.24 8.41 -86.92 -0.73 10.51 16 17 O -0.56 -12.08 13.78 5.29 0.07 -12.00 16 18 N -0.75 -8.08 5.56 -65.22 -0.36 -8.45 16 19 C 0.14 1.51 5.72 -4.04 -0.02 1.48 16 20 C 0.04 0.30 4.68 -3.82 -0.02 0.28 16 21 N -0.52 -4.28 5.16 -231.25 -1.19 -5.47 16 22 C 0.04 0.29 5.78 -2.30 -0.01 0.28 16 23 C -0.16 -1.01 6.80 -24.60 -0.17 -1.18 16 24 C 0.08 0.51 4.32 -24.91 -0.11 0.40 16 25 H 0.06 0.33 8.14 -51.92 -0.42 -0.10 16 26 O -0.56 -3.73 13.39 -35.23 -0.47 -4.21 16 27 C 0.05 0.37 6.64 -2.84 -0.02 0.35 16 28 C -0.19 -4.42 8.64 -39.21 -0.34 -4.76 16 29 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 30 H 0.13 2.83 5.63 -52.49 -0.30 2.53 16 31 H 0.11 1.69 8.06 -52.48 -0.42 1.27 16 32 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 33 H 0.40 4.06 8.84 -40.82 -0.36 3.70 16 34 H 0.39 2.73 8.49 -40.82 -0.35 2.38 16 35 H 0.07 0.81 7.49 -51.93 -0.39 0.42 16 36 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.08 0.53 8.03 -51.93 -0.42 0.12 16 38 H 0.04 0.27 7.85 -51.93 -0.41 -0.14 16 39 H 0.05 0.37 7.62 -51.93 -0.40 -0.02 16 40 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.08 0.37 8.14 -51.92 -0.42 -0.06 16 43 H 0.38 0.94 9.12 45.56 0.42 1.35 16 44 H 0.09 0.78 8.06 -51.93 -0.42 0.36 16 45 H 0.06 0.38 7.55 -51.93 -0.39 -0.01 16 46 H 0.14 3.47 6.23 -52.49 -0.33 3.14 16 LS Contribution 380.83 15.07 5.74 5.74 Total: -1.00 -37.33 380.83 -9.42 -46.74 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -5.70 Total: 9.81 kcal Atomic # 6 Polarization: -4.24 SS G_CDS: -3.16 Total: -7.40 kcal Atomic # 7 Polarization: -48.64 SS G_CDS: -0.87 Total: -49.51 kcal Atomic # 8 Polarization: -21.08 SS G_CDS: -0.40 Total: -21.47 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -37.33 -9.42 -46.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860462211.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.992 kcal (2) G-P(sol) polarization free energy of solvation -37.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds